# hmmscan :: search sequence(s) against a profile database
# HMMER 3.0 (March 2010); http://hmmer.org/
# Copyright (C) 2010 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: BA000019.orf37.fasta
# target HMM database: /data/biodata/HMMerDB/Pfam-A.hmm
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: BA000019.orf37 [L=1418]
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.1e-32 111.0 11.8 7.6e-20 71.3 2.3 6.4 6 PPC Bacterial pre-peptidase C-terminal domain
4.7e-13 47.9 92.9 0.0022 17.8 3.3 10.0 3 HemolysinCabind Hemolysin-type calcium-binding repeat (2 cop
Domain annotation for each model (and alignments):
>> PPC Bacterial pre-peptidase C-terminal domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.5 0.2 0.16 9.3e+02 4 59 .. 117 183 .. 84 192 .. 0.58
2 ? -0.6 0.0 0.36 2.1e+03 12 58 .. 347 388 .. 311 397 .. 0.46
3 ! 71.3 2.3 1.3e-23 7.6e-20 1 69 [. 470 549 .. 470 550 .. 0.95
4 ? -3.2 0.1 2 1.2e+04 15 25 .. 582 603 .. 567 626 .. 0.51
5 ? -1.1 0.6 0.5 3e+03 13 36 .. 987 1019 .. 974 1072 .. 0.49
6 ! 54.4 1.0 2.4e-18 1.4e-14 1 69 [. 1087 1168 .. 1087 1169 .. 0.85
Alignments for each domain:
== domain 1 score: 0.5 bits; conditional E-value: 0.16
EEEE--S----EEEEEECTSS...EEEEE.EEEES.E.SSSSTTC--...-B--SEEEEEESS..... CS
PPC 4 vykfevpaggsltididggsg...dldLy.lldgngp.slaaydans...apsgndeyiefta....p 59
+ +f+++ag+ ++i d++s ++L +++++ + ++ + n+ + gn+++++ft p
BA000019.orf37 117 TATFTLEAGDDYSIG-DSSSEvtfYASLEeVPTPSVTpEISLSVENAtisEAEGNTTTLRFTLseppP 183
446667777766665.4444222222244455555322222222222233455566777777755544 PP
== domain 2 score: -0.6 bits; conditional E-value: 0.36
---EEEEEECTSSEEEEEEEEES.ESSSSTTC---B--SEEEEEESS CS
PPC 12 ggsltididggsgdldLylldgngpslaaydansapsgndeyiefta 58
g +++ + g+ dl+++ + + ++d + +de++ f+
BA000019.orf37 347 GEIVAVR-SDGF-DLKITAKSATIQLPIQADGVA---ESDEQVVFSL 388
1112222.2233.444444444444444433333...2556666665 PP
== domain 3 score: 71.3 bits; conditional E-value: 1.3e-23
-EEEEEE--S----EEEEEECTSS......EEEEEEEEES.ESSSSTTC--.....-B--SEEEEEESS.----EEEEEE CS
PPC 1 dvDvykfevpaggsltididggsg......dldLylldgngpslaaydans.....apsgndeyieftapqaGtYyvaVs 69
dvD+yk+e++ag++++id+d++++ d++L+l+d +g+ la++d+ + + sg ++yieftap++G+Yyv+V+
BA000019.orf37 470 DVDFYKVELKAGDTIKIDTDSNQFadgrkvDTWLRLFDVSGTELASNDDGAapnevFDSGFQSYIEFTAPSDGVYYVGVT 549
8******************999999***99999******************8888877789*****************96 PP
== domain 4 score: -3.2 bits; conditional E-value: 2
EEEEEECTSS...........E CS
PPC 15 ltididggsg...........d 25
l+i++++ +g +
BA000019.orf37 582 LNISLNNPTGfvagateippgN 603
5555555544333333333331 PP
== domain 5 score: -1.1 bits; conditional E-value: 0.5
--.EEEEEECTSS.....EEEEEEEEES....E CS
PPC 13 gs.ltididggsg.....dldLylldgng...p 36
+ l+++i + ++ ++ +ll g+g +
BA000019.orf37 987 TAsLSVAIANDNIaegveTATVTLLAGDGyqiN 1019
444777775555555665444555555542221 PP
== domain 6 score: 54.4 bits; conditional E-value: 2.4e-18
-EEEEEE--S----EEEEEECTSSEEE.....EEEEEES.E.....SSSSTTC--...-B--SEEEEEESS.----EEEEEE CS
PPC 1 dvDvykfevpaggsltididggsgdld.....Lylldgngp.....slaaydans...apsgndeyieftapqaGtYyvaVs 69
dvD+yk+++++g +l+i++d +d++ L+++d++g+ + ++++a++ ++ nd+y+efta ++GtYyv++s
BA000019.orf37 1087 DVDLYKVNLKVGEKLSINVDAAEIDSKllyaqLRVFDAEGNelaktDFDDFQAAPdevFSAFNDPYLEFTAETTGTYYVGIS 1168
8***********************9999788888*****96222225555777777777777******************98 PP
>> HemolysinCabind Hemolysin-type calcium-binding repeat (2 copies)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 5.9 0.5 0.0026 16 2 13 .. 1214 1225 .. 1213 1225 .. 0.89
2 ! 10.8 3.1 6.8e-05 0.41 1 18 [] 1231 1248 .. 1231 1248 .. 0.95
3 ! 11.4 2.4 4.3e-05 0.26 4 18 .] 1243 1257 .. 1240 1257 .. 0.91
Alignments for each domain:
== domain 1 score: 5.9 bits; conditional E-value: 0.0026
---S-EEEE--- CS
HemolysinCabind 2 GgaGnDtLyGga 13
G++G+DtL G++
BA000019.orf37 1214 GTSGDDTLIGTD 1225
99*******986 PP
== domain 2 score: 10.8 bits; conditional E-value: 6.8e-05
E---S-EEEE---S-EEE CS
HemolysinCabind 1 yGgaGnDtLyGgaGnDtl 18
+G++GnD+Ly +G+D+l
BA000019.orf37 1231 FGNGGNDILYARGGDDKL 1248
69**************87 PP
== domain 3 score: 11.4 bits; conditional E-value: 4.3e-05
-S-EEEE---S-EEE CS
HemolysinCabind 4 aGnDtLyGgaGnDtl 18
+G+D L+GgaG+D l
BA000019.orf37 1243 GGDDKLFGGAGDDLL 1257
6************87 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (1418 residues)
Target model(s): 11912 (2158902 nodes)
Passed MSV filter: 231 (0.0193922); expected 238.2 (0.02)
Passed bias filter: 133 (0.0111652); expected 238.2 (0.02)
Passed Vit filter: 15 (0.00125923); expected 11.9 (0.001)
Passed Fwd filter: 2 (0.000167898); expected 0.1 (1e-05)
Initial search space (Z): 11912 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.57u 0.17s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 7849.55
//