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CJFIELDS / BioPerl-1.007000 / t / data / masta.dat 
>m1seq                     pos 1311
CAGAAAAATTGAATTCCCACCCCCC
CAGAAAAATTGAATTCCCACCCCCC
CCTTAAAATAAAATCCCCACCACCA
CAGACAAAGACATTCCACAGCTCCC
CAGAAAAATTGAATTCCCACCCCCC
CAGAAAAATTGAATTCCCACCCCCC
CCTTAAAATAAAATCCCCACCACCA
CAGACAAAGACATTCCACAGCTCCC
>m1logs
  -865    208   -865   -865 
   156      8   -865   -865 
  -865   -865    157     -4 
   156   -865   -865     -4 
   156      8   -865   -865 
   197   -865   -865   -865 
   197   -865   -865   -865 
   197   -865   -865   -865 
  -865   -865     -1    154 
    97   -865   -865     96 
    -3      8     99   -865 
   197   -865   -865   -865 
   156   -865   -865     -4 
  -865   -865   -865    196 
  -865    108   -865     96 
  -865    208   -865   -865 
    -3    166   -865   -865 
  -865    208   -865   -865 
   197   -865   -865   -865 
  -865    166     -1   -865 
  -865    208   -865   -865 
    -3    108   -865     -4 
  -865    208   -865   -865 
  -865    208   -865   -865 
    -3    166   -865   -865 
>m1freq
 0.000635  0.998096  0.000629  0.000640 
 0.748765  0.249966  0.000629  0.000640 
 0.000635  0.000589  0.748759  0.250017 
 0.748765  0.000589  0.000629  0.250017 
 0.748765  0.249966  0.000629  0.000640 
 0.998141  0.000589  0.000629  0.000640 
 0.998141  0.000589  0.000629  0.000640 
 0.998141  0.000589  0.000629  0.000640 
 0.000635  0.000589  0.250006  0.748770 
 0.499388  0.000589  0.000629  0.499393 
 0.250012  0.249966  0.499382  0.000640 
 0.998141  0.000589  0.000629  0.000640 
 0.748765  0.000589  0.000629  0.250017 
 0.000635  0.000589  0.000629  0.998147 
 0.000635  0.499343  0.000629  0.499393 
 0.000635  0.998096  0.000629  0.000640 
 0.250012  0.748719  0.000629  0.000640 
 0.000635  0.998096  0.000629  0.000640 
 0.998141  0.000589  0.000629  0.000640 
 0.000635  0.748719  0.250006  0.000640 
 0.000635  0.998096  0.000629  0.000640 
 0.250012  0.499343  0.000629  0.250017 
 0.000635  0.998096  0.000629  0.000640 
 0.000635  0.998096  0.000629  0.000640 
 0.250012  0.748719  0.000629  0.000640