LOCUS KF527485 1444 bp cRNA linear VRL 02-OCT-2013
DEFINITION Influenza A virus (A/California/07/2009(H1N1)) segment 5
nucleocapsid protein (NP) gene, partial cds.
ACCESSION KF527485
VERSION KF527485.1 GI:537446968
KEYWORDS .
SOURCE Influenza A virus (A/California/07/2009(H1N1))
ORGANISM Influenza A virus (A/California/07/2009(H1N1))
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1444)
AUTHORS Le,V.L., Courtney,C.L., Steel,J. and Compans,R.W.
TITLE Closely Related Influenza Viruses Induce Contrasting Respiratory
Tract Immunopathology
JOURNAL PLoS ONE 8 (9), E76708 (2013)
PUBMED 24086762
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1444)
AUTHORS Le,V.L., Courtney,C.L., Steel,J. and Compans,R.W.
TITLE Direct Submission
JOURNAL Submitted (07-AUG-2013) Microbiology and Immunology, Emory
University, 1518 Clifton Rd Suite 5000, Atlanta, GA 30322, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Lasergene v. 10
Sequencing Technology :: ABI37XL; Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1444
/organism="Influenza A virus (A/California/07/2009(H1N1))"
/mol_type="viral cRNA"
/strain="A/California/07/2009"
/serotype="H1N1"
/host="Homo sapiens"
/db_xref="taxon:641809"
/segment="5"
/country="USA"
/collection_date="09-Apr-2009"
/note="passage details: MDCK 6"
gene <1..>1444
/gene="NP"
CDS <1..>1444
/gene="NP"
/codon_start=2
/product="nucleocapsid protein"
/protein_id="AGU69828.1"
/db_xref="GI:537446969"
/translation="ASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCT
ELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVGGK
WMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDP
RMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAY
ERMCNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLP
ACVYGLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHS
AAFEDLRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSG
GNTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESA
KPEDLSFQGRGVFELSDEKATNPIVPSFDMS"
ORIGIN
1 ggcgtctcaa ggcaccaaac gatcatatga acaaatggag actggtgggg agcgccagga
61 tgccacagaa atcagagcat ctgtcggaag aatgattggt ggaatcggga gattctacat
121 ccaaatgtgc actgaactca aactcagtga ttatgatgga cgactaatcc agaatagcat
181 aacaatagag aggatggtgc tttctgcttt tgatgagaga agaaataaat acctagaaga
241 gcatcccagt gctgggaagg accctaagaa aacaggagga cccatatata gaagagtagg
301 cggaaagtgg atgagagaac tcatccttta tgacaaagaa gaaataagga gagtttggcg
361 ccaagcaaac aatggcgaag atgcaacagc aggtcttact catatcatga tttggcattc
421 caacctgaat gatgccacat atcagagaac aagagcgctt gttcgcaccg gaatggatcc
481 cagaatgtgc tctctaatgc aaggttcaac acttcccaga aggtctggtg ccgcaggtgc
541 tgcggtgaaa ggagttggaa caatagcaat ggagttaatc agaatgatca aacgtggaat
601 caatgaccga aatttctgga ggggtgaaaa tggacgaagg acaagggttg cttatgaaag
661 aatgtgcaat atcctcaaag gaaaatttca aacagctgcc cagagggcaa tgatggatca
721 agtaagagaa agtcgaaacc caggaaacgc tgagattgaa gacctcattt tcctggcacg
781 gtcagcactc attctgaggg gatcagttgc acataaatcc tgcctgcctg cttgtgtgta
841 tgggcttgca gtagcaagtg ggcatgactt tgaaagggaa gggtactcac tggtcgggat
901 agacccattc aaattactcc aaaacagcca agtggtcagc ctgatgagac caaatgaaaa
961 cccagctcac aagagtcaat tggtgtggat ggcatgccac tctgctgcat ttgaagattt
1021 aagagtatca agtttcataa gaggaaagaa agtgattcca agaggaaagc tttccacaag
1081 aggggtccag attgcttcaa atgagaatgt ggaaaccatg gactccaata ccctggaact
1141 gagaagcaga tactgggcca taaggaccag gagtggagga aataccaatc aacaaaaggc
1201 atccgcaggc cagatcagtg tgcagcctac attctcagtg cagcggaatc tcccttttga
1261 aagagcaacc gttatggcag cattcagcgg gaacaatgaa ggacggacat ccgacatgcg
1321 aacagaagtt ataagaatga tggaaagtgc aaagccagaa gatttgtcct tccaggggcg
1381 gggagtcttc gagctctcgg acgaaaaggc aacgaacccg atcgtgcctt cctttgacat
1441 gagt
//