#NEXUS
BEGIN DATA;
DIMENSIONS NTAX=32 NCHAR=2147;
[!These ribosomal sequences are those used in:
Lake, J.A. 1988. Origin of the eukaryotic nucleus determined by rate-invariant analysis of rRNA sequences. Nature, 331:184-186.
Thanks to James Lake for supplying these data, March 1990.
The two trees in the file are the most parsimonious trees found.
]
FORMAT DATATYPE=DNA MISSING=? GAP=- INTERLEAVE ;OPTIONS MSTAXA=UNCERTAIN IGNORE=UNINFORM ;
MATRIX
[ 10 20 30 40 50 60 70 80 90 100]
[ . . . . . . . . . .]
Homo_sapiens --------TAC-----CTGGTTGATCCTGCC---AGTAG-CATATGCTTGTCTCAAAGATACCCACTCCC-----GACC-CGGGGAGGTAGTGACGAAAA [77]
Rattus_norvegicus --------TAC-----CTGGTTGATCCTGCC---AGTAG-CATATGCTTGTCTCAAAGATACCCACTCCC-----GACC-CGGGGAGGTAGTGACGAAAA [77]
Xenopus_laevis --------TAC-----CTGGTTGATCCTGCC---AGTAG-CATATGCTTGTCTCAAAGATACCCACTCCC-----GACG-CGGGGAGGTAGTGACGAAAA [77]
A._salina --------TAC-----CTGGTTGATCCTGCC---AGTAG-CATATGCTTGTCTCAAAGATACCCACTCCC-----AGCA-CGGGGAGGTAGTGACGAAAA [77]
S._cerevisiae --------TAT-----CTGGTTGATCCTGCC---AGTAGTCATATGCTTGTCTCAAAGATACCCAATCCT-----AATT-CAGGGAGGTAGTGACAATAA [78]
P.MICA ---------AT-----CTGGTTGATCCTGCC---AGTAGTCATATGCTTGTCTCAAAGATACCCAATCCT-----GACA-CAGGGAGGTAGTGACAAGAA [77]
D.DISC --------TAA-----CTGGTTGATCCTGCC---AGTAGTCATATGCTTGTCTCAAAGATACTCAATCCC-----AATA-CGGGGAAGTAGTGACAATAA [78]
T.BRUC --------GAT-----CTGGTTGATTCTGCC---AGTAGTCATATGCTTGTTTCAAGGATGCCCAATGTCGAAAAAATA-CGATGAGGCAGCGAAAAGAA [83]
E.GRAC --------AAT-----CTGGTTGATCCTGCC---AGCAGTCATATGCTTTGTTCAAGGGTGCCCCATGCA-AAGACACT-CTGTGAGGCAGCGACGAACA [82]
Zea_mays --------TAC-----CTGGTTGATCCTGCC---AGTAGTCATATGCTTGTCTCAAAGATACCCAATCCT-----GACA-CGGGGAGGTAGTGACAATAA [78]
D._mobilis ------TAACT-----CCGGTTGATCCTGCC---GGTCCCGACCGCTATCGGGGTGGGGTCCGCAATGCG-----GGAAACCGTGACGGGGCCACCCCGA [81]
S._solfataricus --------ATT-----CCGGTTGATCCTGCC---GGACCCGACCGCTATCGGGGTAGGGTCCCCAATGCG-----CGAAAGCGTGAGGGCGCTACCCCGA [79]
T._tenax --------AAA-----CCGGTTGATCCTGCC---GGACCTGACCGCTATCGGGGTGGGGTCCGCAATGCG-----GGCAACCGCGACGGGGCCACCCCGA [79]
M._vannielii --------ATT-----CCGGTTGATCCCGCC---GGAGGCTACTGCTATTGGGGTTCGATCCGCAATGCA-----CGAAAGTGCGACGGGGGGACCCCAA [79]
MB._formicicum --------AGT-----CCGTTTGATCCTGGC---GGAGGCCACTGCTATTGGGTTTCGATCCGCAATGCA-----CGAAAGTGCGACGGGGGAAACCCAA [79]
MS._hungatei --------ATT-----CTGGTTGATCCTGCC---AGAGGCCACTGCTATCGGGGTTTGATTTACCATGCG-----GGCAACCGTGATAAGGAAACCCCGA [79]
H._volacanii --------ATT-----CCGGTTGATCCTGCC---GGAGGTCATTGCTATTGGGGTCCGATTTACACTGCA-----CGCAAGTGCGATAAGGGGACCCCAA [79]
HC._morrhuae --------ATT-----CCGGTTGATCCTGCC---GGAGGCTATTGCTATCGGGGTCCGATTTACACTGCA-----CGCCAGTGCGATAAGGGGACCCCGA [79]
H.HALO --------ATT-----CCGGTTGATCCTGCC---GGAGGCCATTGCTATCGGAGTCCGATTTACACTGTA-----CGAAAGTGCGATAAGGGGACTCCGA [79]
H._cutirubrum --------ATT-----CCGGTTGATCCTGCC---GGAGGCCATTGCTATCGGAGTCCGATTTACACTGTA-----CGAAAGTGCGATAAGGGGACTCCGA [79]
AN._nidulans --CAAAATGGA-----GAGTTTGATCCTGGCTCAGGAT--GAACGCTGGCGGCGTGC--TCCGCAATGGG-----CGCAAGCCTGACGGAGCAACGCCGC [84]
HE.CHL ----------------------GATCCTGGCTCAGGAC--GAACGCTGGCGGCATGC--TCCGCAATGGG-----CGAAAGCCTGACGGAGCAATGCCGC [69]
Bc._subtilis --TTTATCGGA-----GAGTTTGATCCTGGCTCAGGAC--GAACGCTGGCGGCATGC--TCCGCAATGGA-----CGAAAGTCTGACGGAGCAACGCCGC [84]
MY.CAP ----AAAATGA-----GAGTTTGATCCTGGCTCAGGAT--AAACGCTGGCGGCTGGC--TTCACAATGGA-----CGAAAGTCTGATGAAGCAATGCCGC [82]
E._coli ---AAATTGAA-----GAGTTTGATCATGGCTCAGATT--GAACGCTGGCGGCAGGC--TGCACAATGGG-----CGCAAGCCTGATGCAGCCATGCCGC [83]
MYX.XA ---CAATTGGA-----GAGTTTGATCCTGGCTCAGAAC--GAACGCTGGCGGCGTGC--TGCGCAATGGG-----CGAAAGCCTGACGCAGCAACGCCGC [83]
P.TEST --CGAACTATA-----GAGTTTGATCCTGGCTCAGATT--GAACGCTGGCGGCATGC--TGGACAATGGG-----CGAAAGCCTGATCCAGCAATGCCGC [84]
AG.TUM -CTCAACTTGA-----GAGTTTGATCCTGGCTCAGAAC--GAACGCTGGCGGCAGGC--TGGACAATGGG-----CGCAAGCCTGATCCAGCCATGCCGC [85]
DV.DES --TGAACTGGA-----GAGTTTGATTCTGGCTCAGATT--GAACGCTGGCGGCGTGC--TGCGCAATGGG-----CGAAAGCCTGACGCAGCGACGCCGC [84]
BA.FRG -TTACAACGAA-----GAGTTTGATCCTGGCTCAGGAT--GAACGCTAGCTACAGGC--TGGTCAATGGG-----CGCTAGCCTGAACCAGCCAAGTAGC [85]
'Zea_mays_(chloroplast)' --CTCAT-GGA-----GAGTTCGATCCTGGCTCAGGAT--GAACGCTGGCGGCATGC--TCCGCAATGGG-----CGAAAGCCTGACGGAGCAATGCCGC [83]
T.AMIT ATCATAGTCAAAATCTGAGTTTGATCCTGGCTCAGAAG--GAACGCTAGCTATATGC--TGGACAATGGG-----CGAAAGCCCGATCCAGCAATATCGC [91]
[ 110 120 130 140 150 160 170 180 190 200]
[ . . . . . . . . . .]
Homo_sapiens ATAACA-AT-AC-AGG-------------------ACTCTTTCGAGGCC--CTGTAATTGGAATGAGTCCACTTT-AA---ATCCTTTAACGAGGA-TCC [148]
Rattus_norvegicus ATAACA-AT-AC-AGG-------------------ACTCTTTCGAGGCC--CTGTAATTGGAATGAGTCCACTTT-AA---ATCCTTTAACGAGGA-TCC [148]
Xenopus_laevis ATAACA-AT-AC-AGG-------------------ACTCTTTCGAGGCC--CTGTAATTGGAATGAGTACACTTT-AA---ATCCTTTAACGAGGA-TCT [148]
A._salina ATAACG-AT-GC-AGG-------------------ACTCATCCGAGGCC--CTGTGATTGGAATGAGTACACTTT-AA---ATCCTTTAACGAGGA-TCC [148]
S._cerevisiae ATAACG-AT-AC-AGG-------------------GCCCATTCG-GGTC--TTGTAATTGGAATGAGTACAATGT-AA---ATACCTTAACGAGGA-ACA [148]
P.MICA ATAACA-AT-AC-AGG-------------------GCATATCTG---TC--TTGTAATTGGAATGAGTAGAATTT-AA---ATCCCTTTACGAGTA-CCA [145]
D.DISC ATATCA-AT-AC-CTA-------------------TCCTTTTTG-GAGG----GCAATTGAAATGAACACAAATT-AA---AACTCTTAATTAACA--CA [145]
T.BRUC ATAGAG-CCGAC-CGT-------------------GCCCTAGTG-CATG--GTTGTTTTCAATGGGGGATACTCA-AACCCATCCAATATCGAGTA-ACA [157]
E.GRAC GTAGCA-AC-CC-CGTC------------------GGCCTTACG-TGCCGATGGGGCTTGGAATGGACGCTATCC-AA---AGACAGCCGTGAGTA-TCA [155]
Zea_mays ATAACA-AT-AC-CGG-------------------GCGCGTTAG-TGTC--TGGTAATTGGAATGAGTACAATCT-AA---ATCCCTTAACGAGGA-TCC [148]
D._mobilis GTGCCC-CC-TT-ACG-------------------GG------G-GCTT--TTCCC-------------CGCTGT-AG---GAAGGCGGGG---GA-ATA [129]
S._solfataricus GTGCCT-CC-GC-AAG-------------------GA------G-GCTT--TTCCC-------------CGCTCT-AA---AAAGGCGGGG---GA-ATA [127]
T._tenax GTGCCG-GG-CG-AAG-------------------AGCC---CG-GCTT--TTGCC-------------CGGTGT-AA---GGAGCCGGGC---GA-ATA [130]
M._vannielii GTGC-T-CA-TGCACA-------------------GCAT---GG-GCTT--TTATC-------------AAGTGT-AA---ACAGCTTGAG---GA-ATA [130]
MB._formicicum GTGCCA-CT-CTTAAC-------------------GGGG---TG-GCTT--TTCTT-------------AAGTGT-AA---AAAGCTTTTG---GA-ATA [131]
MS._hungatei GTGC----C-AGCACA-------------------GGCT---GG-CTGT--CCACC--------------AGTGT-AA---ATAACT-GGT---GA-AGA [126]
H._volacanii GTGCGAGGG-CA-TAT-------------------AGTC---CTCGCTT--TTCTC-------------GACCGT-AA---GGCGGTCGAG---GA-ATA [132]
HC._morrhuae GTGCGAGGG-CA-TAC-------------------AGTC---CTCGCTT--TTCGT-------------GACCGT-AA---GAAGGTCTCA---GA-ATA [132]
H.HALO GTGTGAAGG-CA-TAG-------------------AGCC---TTCACTT--TTGTA-------------CACCGT-AA---GGTGGTGCAC---GA-ATA [132]
H._cutirubrum GTGTGAAGG-CA-TAG-------------------AGCC---TTCACTT--TTGTA-------------CACCGT-AA---GGTGGTGCAC---GA-ATA [132]
AN._nidulans GTGGGG-GA-GG-AAGGTT--TT-T-GGACTGTAAACCC---CT-TTTC--TCAGG-------------GAAGAA-GA---AAG---------------- [138]
HE.CHL GTGGGG-GA-TG-AAGGTC--TT-C-GGATTGTAAACCC---TT-GTCT--TCGGG-------------GAAGAA------------GTT---------- [121]
Bc._subtilis GTGAGT-GA-TG-AAGGTT--TT-C-GGATCGTAAAGCT---CT-GTTG--TTAGG-------------GAAGAA-CA---AGTACCGTTC---GA-ATA [150]
MY.CAP GTGAGT-GA-TG-ACGGCC--TT-C-GGGTTGTAAAGCT---CT-GTTG--TAAGG-------------GAAGAA-AA---AATAGAGTAG---GA-A-A [147]
E._coli GTGTAT-GA-AG-AAGGCC--TT-C-GGGTTGTAAAGTA---CT-TTCA--GCGGG-------------GAGGAAGGG---AGTAAAGTT-----A-ATA [148]
MYX.XA GTGTGT-GA-TG-AAGGTC--TT-T-GGATTGTAAAGCA---CT-TTCG--ACCGG-------------GAAGAA-AA---CCCGTTGGCT---AACATC [150]
P.TEST GTGCAG-GA-TG-AAGGCC--CT-C-GGGTTGTAAACTG---CT-TTTG--TACGG-------------AACGAA--A---AGCCTGGGGC---TA-ATA [149]
AG.TUM GTGAGT-GA-TG-AAGGCC--TT-A-GGGTTGTAAAGCT---CT-TTCA--CCGGA-------------GAAGAT-AA---------------------- [136]
DV.DES GTGAGG-GA-TG-AAGGTT--TT-C-GGATCGTAAACCT---CT-GTCA--GAAGG-------------GAAGAA-AC---TACGTTGTGC---TA-ATC [150]
BA.FRG GTGAAG-GA-TG-AAGGCT--CTATGGGTCGTAAACTT---CT-TTTA-?-TATAA-------------GAATAA------AGTGCAGTAT---GT-ATA [151]
'Zea_mays_(chloroplast)' GTGGAG-GT-GG-AAGGCC--TA-C-GGGTCGTCAACTT---CT-TTTC--TCGGA-------------GAAGAA------------------------- [132]
T.AMIT GTGAGT-GA-AG-AAGGGCAATG-C-CGCTTGTAAAGCT---CT-TTCG--TCGAG-------------TGCG--------------------------- [140]
[ 210 220 230 240 250 260 270 280 290 300]
[ . . . . . . . . . .]
Homo_sapiens ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCA [219]
Rattus_norvegicus ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCA [219]
Xenopus_laevis ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCA [219]
A._salina ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAACTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCG [219]
S._cerevisiae ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCA [219]
P.MICA ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCG [216]
D.DISC ATTG?AG-----------------------------GGCAAGTCTGGTGCCAGCRGCCGCGGTAATTCCAGCTCCAATAGCATATACTAAAGTTGTTGCA [216]
T.BRUC ATTGGAG-----------------------------GACAAGTCTGGTGCCAGCACCCGCGGTAATTCCAGCTCCAAAAGCGTATATTAATGCTGTTGCT [228]
E.GRAC ACCGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCTGCGGTAATTCCAGCTCCGAGGGCGTATACTAACATTGCTGCT [226]
Zea_mays ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCA [219]
D._mobilis AGCGGGG-----------------------------GGCAAGTCTGGTGTCAGCCGCCGCGGTAATACCAGCCCCGCGAGTGGTCGGGACGATTATTGGG [200]
S._solfataricus AGCGGGG-----------------------------GGCAAGTCTGGTGTCAGCCGCCGCGGTAATACCAGCTCCGCGAGTGGTCGGGGTGATTACTGGG [198]
T._tenax AGCGGGG-----------------------------GGTAAGTCTGGTGTCAGCCGCCGCGGTAATACCAGCCCCGCGAGTGGTCAGGGTGATTACTGGG [201]
M._vannielii AGGGCTG-----------------------------GGCAAGTTCGGTGCCAGCAGCCGCGGTAATACCGACGGCCCGAGTGGTAGCCACTCTTATTGGG [201]
MB._formicicum AGAGCTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAACACCGGCAGCTCAAGTGGTGGCCGTTTTTATTGGG [202]
MS._hungatei AGGGC?G-----------------------------GGCAAG?????--------------GTAATACCG-------GAGTGGTGGCCGCTATTACTGGG [176]
H._volacanii AGAGCTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGCTCAAGTGATGACCGATATTATTGGG [203]
HC._morrhuae AGAGCTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGCTCGAGTGATAGCCACTATTATTGGG [203]
H.HALO AGGACTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGTCCGAGTGATGGCCGATCTTATTGGG [203]
H._cutirubrum AGGACTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGTCCGAGTGATGGCCGATCTTATTGGG [203]
AN._nidulans -----------TGACGGTACCTGAGGAATAAGCCTCGGCTAATTCCGTGCCAGCAGCCGCGGTAATACGGGAGAGGCAAGCGTTATCCGGAATTATTGGG [227]
HE.CHL ----------TTGACGGTACCCGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGAATGACTGGG [211]
Bc._subtilis GGGCGGTACCTTGACGGTACCTAACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGG [250]
MY.CAP TGACTTTATCTTGACAGTACCTTACCAGAAAGCCACGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGTGGCAAGCGTTATCCGGATTTATTGGG [247]
E._coli CCTTTGCTCATTGACGTTACCCGCAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGG [248]
MYX.XA CAACGG---CTTGACGGTACCGGGAGAAGAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTGTTCGGAATTATTGGG [247]
P.TEST TCCCCGGGTCATGACGGTACCGTAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGG [249]
AG.TUM -----------TGACGGTATCCGGAGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTCGGAATTACTGGG [225]
DV.DES AG-CAGCGTACTGACGGTACCTTCAAAGGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGG [249]
BA.FRG C-----TGTTTTGTATGTATTATATGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTATTGGG [246]
'Zea_mays_(chloroplast)' -------ACAATGACGGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGAATGATTGGG [225]
T.AMIT ----CGATCAT-GACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGACTGGG [235]
[ 310 320 330 340 350 360 370 380 390 400]
[ . . . . . . . . . .]
Homo_sapiens GTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCC----------------------------------------------------- [266]
Rattus_norvegicus GTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCC----------------------------------------------------- [266]
Xenopus_laevis GTTAAAAAGCTCGTAGTTGGATCTTGGGATCGAGCTGGCGGTCCGCCGCGAGGC---------------------------------------------- [273]
A._salina GTTAAAAAGCTCGTAGTTGGATATGGGTCTCGGTCGGGTGGTGCCGCCTCAC------------------------------------------------ [271]
S._cerevisiae GTTAAAAAGCTCGTAGTTGAACTTTGGGCCCGGTTGGCCGGTCCGATTTTTT------------------------------------------------ [271]
P.MICA GTTAAAAAGCTCGTAGTTGGATTTCTGCCGAGGACGACCGGTCCGCCTCT-------------------------------------------------- [266]
D.DISC GTTAAAAAGCTCGTAGTTGAAGTTTAAGGTTTACCGGGTTTATGTCATTTACCACTT------------------------------------------- [273]
T.BRUC GTTAAAGGGTTCGTAGTTGAACTGTGGGCCACGTAGTTTTGTGCCGTGCCAGTC----------CCGTCCA--------CCTCGGAC-------GTGTT- [302]
E.GRAC GTTAAAACACTTGTAGTCTGCCTACGGGCTGCA-GGTCTGCTGGGTGGCCGGTTTGTTGTTTCTCTGGCCAGGGAAGGACCTCGGTTCGACCCTGTGTTG [325]
Zea_mays GTTAAAAAGCTCGTAGTTGGACCTTGGGCCGGGCCGGGTGCCGCCGCC---------------------------------------------------- [267]
D._mobilis CCTAAAGCGCCCGTAGCCG--------GCCCGGCAAGTCCCCTC-------------------------------------------------------- [236]
S._solfataricus CCTAAAGCGCCTGTAGCCG--------GCCCACCAAGTCGCCCC-------------------------------------------------------- [234]
T._tenax CTTAAAGCGCCCGTAGCCG--------GCCCGGCAAGTCGCTCC-------------------------------------------------------- [237]
M._vannielii CCTAAAGCGTCCGTAGCCG--------GTCCAGTAAGTCCCTGT-------------------------------------------------------- [237]
MB._formicicum CCTAAAGCGTTCGTAGCCG--------GCTTGATAAGTCTCTGG-------------------------------------------------------- [238]
MS._hungatei CTTAAAGGGTCCGTAGCTG--------GATATACAAGTCCCTTG-------------------------------------------------------- [212]
H._volacanii CCTAAAGCGTCCGTAGCCG--------GCCACGAAGGTTCATCG-------------------------------------------------------- [239]
HC._morrhuae CCTAAAGCGTCCGTAGCCG--------GCCGAACAGGTCCGTCG-------------------------------------------------------- [239]
H.HALO CCTAAAGCGTCCGTAGCTG--------GCTGAACAAGTCCGTTG-------------------------------------------------------- [239]
H._cutirubrum CCTAAAGCGTCCGTAGCTG--------GCTGAACAAGTCCGTTG-------------------------------------------------------- [239]
AN._nidulans CGTAAAGCGCCTGCAGGCG--------GTTAATCAAGTCTGTTG-------------------------------------------------------- [263]
HE.CHL CGTAAAGCGCGTGCAGGCG--------GACATGTAAGTCTGAGG-------------------------------------------------------- [247]
Bc._subtilis CGTAAAGCGCTCGCAGGCG--------GTTTCTTAAGTCTGATG-------------------------------------------------------- [286]
MY.CAP CGTATAGGGTGCGTAGGCG--------GTTTTGCAAGTTTGAGG-------------------------------------------------------- [283]
E._coli CGTAAAGCGCACGCAGGCG--------GTTTGTTAAGTCAGATG-------------------------------------------------------- [284]
MYX.XA CGTAAAGCGCGTGTAGGCG--------GCGTGACAAGTCGGGTG-------------------------------------------------------- [283]
P.TEST CGTAAAGCGTGCGCAGGCG--------GTTTTGTAAGACAGTGG-------------------------------------------------------- [285]
AG.TUM CGTAAAGCGCACGTAGGCG--------GATATTTAAGTCAGGGG-------------------------------------------------------- [261]
DV.DES CGTAAAGCGCACGTAGGCT--------GTAGTGTAAGTCAGGGG-------------------------------------------------------- [285]
BA.FRG TTTAAAGGGAGCGTAGGTG--------GACTGGTAAGTCAGTTG-------------------------------------------------------- [282]
'Zea_mays_(chloroplast)' CGTAAAGCGTCTGTAGGTG--------GCTTTTCAAGTCCGCCG-------------------------------------------------------- [261]
T.AMIT CGTAAAGGGCACGTAGGCG--------GTGAATCGGGTTGAAAG-------------------------------------------------------- [271]
[ 410 420 430 440 450 460 470 480 490 500]
[ . . . . . . . . . .]
Homo_sapiens ---------GCGAGGCGAGCCACCGCCC-GTCCCC---GCCCCTTGCCTCTCGG-CG-CCCC-------------------------------------- [313]
Rattus_norvegicus ---------GCGAGGCGGCTCAGCGCCCTGTCCCC---AGCCCCTGCCTCTCGG-CG-CCCC-------------------------------------- [314]
Xenopus_laevis --------GGCTAC-CGCCTGTCCCAGCCCCTGCCTCTCGGCGCCTCCCCGATG-CT-CTTG-------------------------------------- [324]
A._salina --------GGTGGTCACTGCCTCGATCGGACAATTCATTGGATCGTTCGGGGTG-CT-CTTA-------------------------------------- [323]
S._cerevisiae --------CGTGTACTGGATTTCCAACGGGGCCTT---TCCTTCTGGCTAACCT-TG-AGTC-------------------------------------- [320]
P.MICA ---------GGGTGAGTATCTGCTCGCCTGGCATC---TTCTT--GGAGAACGT-AG-CTGG-------------------------------------- [312]
D.DISC --------CGTGGT-TAAATCGACACCGGTATCTCT-TTCTTAATAGTTCAGCT-TG-TATT-------------------------------------- [323]
T.BRUC ------------TTGACCCACGCCCTCGTGGCCCG---TGAACACACTCAGATA-CA-AG--AAACACGGGAGCGGTTCCT------------CCTCACT [371]
E.GRAC GGCTGCAACGGCTGGACTCAACCCCCAGTGGTACG---TCCCTGCGCCCACCTC-TC-AGTCGATGGTGAGATCTGCTCCTGCCAAAAGTCTGCTTCACT [420]
Zea_mays ---------GTACG-GGCAGAACCGACCGGCTCGA---CCCTTCTGCCGGCGAT-GC-GCTC-------------------------------------- [314]
D._mobilis ---------------CTAAATTCCCG-------------------GGCTCAACC-CG-GG---------------------------------------- [260]
S._solfataricus ---------------TTAAAGTCCCC-------------------GGCTCAACC-GG-GG---------------------------------------- [258]
T._tenax ---------------TGAAATCCCCA-------------------GGCTCAACC-TG-GG---------------------------------------- [261]
M._vannielii ---------------TTAAATTCTCT-------------------GGCTTAACCA-G-AG---------------------------------------- [261]
MB._formicicum ---------------TGAAATCTCAC-------------------GGCTTAACCGTG-AG---------------------------------------- [263]
MS._hungatei ---------------AGAAATCCGCC-------------------GGCTTAACCG-G-TG---------------------------------------- [236]
H._volacanii ---------------GGAAATCCGCC-------------------AGCTCAACT-GG-CG---------------------------------------- [263]
HC._morrhuae ---------------GGAAATCCACC-------------------CGCTCAACG-GGTGG---------------------------------------- [264]
H.HALO ---------------GGAAATCTGTC-------------------CGCTTAACG-GG-CA---------------------------------------- [263]
H._cutirubrum ---------------GGAAATCTGTC-------------------CGCTTAACG-GG-CA---------------------------------------- [263]
AN._nidulans ---------------TCAAAGCGTGG-------------------GGCTCAACC-TC-AT---------------------------------------- [287]
HE.CHL ---------------TGAAAGCTTGG-------------------AGCTCAACT-CC-GA---------------------------------------- [271]
Bc._subtilis ---------------TGAAAGCCCCC-------------------GGCTCAACC-GG-GG---------------------------------------- [310]
MY.CAP ---------------TTAAAGTCCGG-------------------AGCTCAACT-CC-GG---------------------------------------- [307]
E._coli ---------------TGAAATCCCCG-------------------GGCTCAACC-TG-GG---------------------------------------- [308]
MYX.XA ---------------TGAAAGCCCTC-------------------AGCTCAACT-GA-GG---------------------------------------- [307]
P.TEST ---------------TGAAATCCCCG-------------------GGCTCAACC-TG-GG---------------------------------------- [309]
AG.TUM ---------------TGAAATCCCAG-------------------AGCTCAACT-CT-GG---------------------------------------- [285]
DV.DES ---------------TGAAATCCCAC-------------------GGCTCAACC-GT-GG---------------------------------------- [309]
BA.FRG ---------------TGAAAGTTTGC-------------------GGCTCAACC-GT-AA---------------------------------------- [306]
'Zea_mays_(chloroplast)' ---------------TCAAATCCCAG-------------------GGCTCAACC-CT-GG---------------------------------------- [285]
T.AMIT ---------------TGAAAGTCGCC-------------------AAA--AAGT-GG-CG---------------------------------------- [293]
[ 510 520 530 540 550 560 570 580 590 600]
[ . . . . . . . . . .]
Homo_sapiens --------------CTCGATGCTCT-TAG-----------------------------------CT-GAGTGTCCCGCGGGGCCCGAAGCGTTTACTT-- [360]
Rattus_norvegicus --------------CTCGATGCTCT-TAG-----------------------------------CT-GAGTGTCCCGCGGGGCCCGAAGCGTTTACTT-- [361]
Xenopus_laevis --------------ACTGAGTGTCC-CGG-----------------------------------GG-GC--------------CCGAAGCGTTTACTT-- [357]
A._salina --------------ACCGAGTGTCC-TGG-----------------------------------GT-GG--------------CCGATACGTTTACTT-- [356]
S._cerevisiae --------------CTTGTGGCTCT-TGG-----------------------------------CG-AA--------------CCAGGACTTTTACTT-- [353]
P.MICA --------------CACTTGACTGTGTGG-------------------------------TGCGGT-AT--------------CCAGGACTTTTACTT-- [350]
D.DISC --------------ATCTTTGATAG-TGC-----------------------------------TT-GT--------------TTGGACATTTCACTG-- [356]
T.BRUC --------------TTCACGCATGT-CATGCATGCGAGGGG------------------------G-CG--------------TCCGTGAATTTTACTGT [417]
E.GRAC GCAGGCCAAAGCGGTTTATGCCTCC-CGCACTGGCAACGGACACCAACAGGGGACCCAGC--CTCG-AG--------------CTGGGTAGTCTACCTCT [502]
Zea_mays --------------CTGGCCTTAAC-TGG-----------------------------------CC-GGGT------CGTGCCTCCGGGCCGTTACTT-- [355]
D._mobilis -------------------GACTGG-AGG-----------------------------------GG-A-------------------------------- [272]
S._solfataricus -------------------AACTGG-GGG-----------------------------------CG-A-------------------------------- [270]
T._tenax -------------------GGCAGG-GGG-----------------------------------CG-A-------------------------------- [273]
M._vannielii -------------------GACTGG-CAG-----------------------------------GG-A-------------------------------- [273]
MB._formicicum -------------------AATTGC-TGG-----------------------------------AG-A-------------------------------- [275]
MS._hungatei -------------------GCGTTC-AGG-----------------------------------GG-A-------------------------------- [248]
H._volacanii -------------------GGCGTC-CGG-----------------------------------TGAA-------------------------------- [276]
HC._morrhuae -------------------GACGTC-CGG-----------------------------------CGGA-------------------------------- [277]
H.HALO -------------------GGCGTC-CAG-----------------------------------CGGA-------------------------------- [276]
H._cutirubrum -------------------GGCGTC-CAG-----------------------------------CGGA-------------------------------- [276]
AN._nidulans -------------------ACAGGC-AAT-----------------------------------GG-A-------------------------------- [299]
HE.CHL -------------------AACGGC-CTT-----------------------------------GG-A-------------------------------- [283]
Bc._subtilis -------------------AGGGTC-ATT-----------------------------------GG-A-------------------------------- [322]
MY.CAP -------------------TTCGCC--TT-----------------------------------GA-A-------------------------------- [318]
E._coli -------------------AACTGC-ATC-----------------------------------TG-A-------------------------------- [320]
MYX.XA -------------------AAGTGC-GCC-----------------------------------CG-A-------------------------------- [319]
P.TEST -------------------AACTGC-CAT-----------------------------------TG-T-------------------------------- [321]
AG.TUM -------------------AACTGC-CTT-----------------------------------TG-A-------------------------------- [297]
DV.DES -------------------AACTGC-CTT-----------------------------------TG-A-------------------------------- [321]
BA.FRG -------------------AATTGC-AGC-----------------------------------TG-A-------------------------------- [318]
'Zea_mays_(chloroplast)' -------------------ACAGGC-GGT-----------------------------------GG-A-------------------------------- [297]
T.AMIT -------------------GAATGC-TCT-----------------------------------CG-A-------------------------------- [305]
[ 610 620 630 640 650 660 670 680 690 700]
[ . . . . . . . . . .]
Homo_sapiens ----------------------------------TGAAAAAATTAGAGTGTTCAAAGCA----------GGCCCGAGCCGCCT-------GGATACCG-C [408]
Rattus_norvegicus ----------------------------------TGAAAAAATTAGAGTGTTCAAAGCA----------GGCCCGAGCCGCCT-------GGATACCG-C [409]
Xenopus_laevis ----------------------------------TGAAAAAATTAGAGTGTTCCAAGCA----------GGC-CGCGTCGCCT-------GGATACTT-C [404]
A._salina ----------------------------------TGAACAAATTAGAGTGCTTAAAGCA----------GGTGCACCGCGCCT-------GAATATCA-C [404]
S._cerevisiae ----------------------------------TGAAAAAATTAGAGTGTTCAAAGCA----------GGC--GTATTGCTC-------GAATATAT-T [399]
P.MICA ----------------------------------TGAGGAAATTAGAGTGTTTCAAGCC----------AGT---TACGCCTT-------GAATACAT-T [395]
D.DISC ----------------------------------TGAGAAAATTGTGGTGTTTAAAGCA----------GGC--GTCTCGCCT-------GATCTTTTGC [403]
T.BRUC GACC--------------------------------AAAAA----AGTGCGACCAAAGCAGTCTGCCGAC-T--TGAATTACAAAGCATGGGATAACG-A [477]
E.GRAC GGTCCACCACCGGAGCCCACCGTCTTCGACACCCTGGAAAACTCAGTGTGCTCAAAGCATCCCCGCGACGGC--TGAATGTCCATCCATGGAATGTCA-A [599]
Zea_mays ----------------------------------TGAAGAAATTAGAGTGCTCAAAGCA----------AGC---CATCGCTCT------GGATACAT-T [401]
D._mobilis ---------------------------------------------------------------------------TACTGCCG-------GGCTA----- [285]
S._solfataricus ---------------------------------------------------------------------------TACTGGTG-------GGCTA----- [283]
T._tenax ---------------------------------------------------------------------------TACTGCCG-------GGCTA----- [286]
M._vannielii ---------------------------------------------------------------------------TACTGCTG-------GACTT----- [286]
MB._formicicum ---------------------------------------------------------------------------TACTATTA-------GCCTT----- [288]
MS._hungatei ---------------------------------------------------------------------------AACTGTAT-------TTCTA----- [261]
H._volacanii ---------------------------------------------------------------------------AACCACGT-------GGCTT----- [289]
HC._morrhuae ---------------------------------------------------------------------------AACCAGTC-------GGCTT----- [290]
H.HALO ---------------------------------------------------------------------------AACTGTTC-------AGCTT----- [289]
H._cutirubrum ---------------------------------------------------------------------------AACTGTTC-------AGCTT----- [289]
AN._nidulans ---------------------------------------------------------------------------AACTGATT-------GACTA----- [312]
HE.CHL ---------------------------------------------------------------------------AACTGGAT-------GTCTT----- [296]
Bc._subtilis ---------------------------------------------------------------------------AACTGGGG-------AACTT----- [335]
MY.CAP ---------------------------------------------------------------------------GACTGTTT-------TACTA----- [331]
E._coli ---------------------------------------------------------------------------TACTGGCA-------AGCTT----- [333]
MYX.XA ---------------------------------------------------------------------------AACTGTTG-------TGCTT----- [332]
P.TEST ---------------------------------------------------------------------------GACTGCAA-------GGCTA----- [334]
AG.TUM ---------------------------------------------------------------------------TACTGGGT-------ATCTT----- [310]
DV.DES ---------------------------------------------------------------------------TACTGCAC-------AACTT----- [334]
BA.FRG ---------------------------------------------------------------------------TACTGTCA-------GTCTT----- [331]
'Zea_mays_(chloroplast)' ---------------------------------------------------------------------------AACTACCA-------AGCTG----- [310]
T.AMIT ---------------------------------------------------------------------------AACCAATT-------CACTT----- [318]
[ 710 720 730 740 750 760 770 780 790 800]
[ . . . . . . . . . .]
Homo_sapiens AGCTAGGAATAA---TGGAATAGGA-------------C-CGCGGTTCTATTTTG-------------TTGGTTTTC------GGAACT-G--------- [462]
Rattus_norvegicus AGCTAGGAATAA---TGGAATAGGA-------------C-CGCGGTTCTATTTTG-------------TTGGTTTTC------GGAACT-G--------- [463]
Xenopus_laevis AGCTAGGAATAA---TGGAATAGGA-------------C-TCCGGTTCTATTTTG-------------TTGGTTTTC------GGAACT-G--------- [458]
A._salina AGCATGGAATGA---TGGAATAGGA-------------C-CTCGGTCTTATTATG-------------TTGGTTTTC------TGGACTTG--------- [459]
S._cerevisiae AGCATGGAATAA---TAGAATAGGA-------------CGTTTGGTTCTATTTTG-------------TTGGTTTCT------AGGACC-A--------- [454]
P.MICA AGCATGGAATAA---TAAGATAGGA-------------C-CTCGGTTCTATTTTG-------------TTGGTTTCT------AGAGCT-G--------- [449]
D.DISC AGCATGGTATGA---TGAAACATGA-------------CATTTTACGCTATTGGT-------------TTGCGTTTA------AAG-------------- [454]
T.BRUC AGCATCAGCCCTGGG-GCCACCGTTTCGGCTTTTGTTGGTTTTAGAAGTCCTTGGGAGATTATGGGGCCGCGTGCCTTGGGTCGGTGTT-TCGTGTCTCA [575]
E.GRAC GGCATCGACCAAGTGTGGCA----TTGGAGTTGTGCTGCCTTGGGGCCCACTCTGGACAACCTGGTGGTGTGTTCCTG----CAGGATC-AACAGGATCG [690]
Zea_mays AGCATGGGATAA---CATCATAGGA-------------T-TCCGGTCCTATTGTG-------------TTGGCCTTC------GGGATC-G--------- [455]
D._mobilis ---------------------------------------------------------------------------------------------------- [285]
S._solfataricus ---------------------------------------------------------------------------------------------------- [283]
T._tenax ---------------------------------------------------------------------------------------------------- [286]
M._vannielii ---------------------------------------------------------------------------------------------------- [286]
MB._formicicum ---------------------------------------------------------------------------------------------------- [288]
MS._hungatei ---------------------------------------------------------------------------------------------------- [261]
H._volacanii ---------------------------------------------------------------------------------------------------- [289]
HC._morrhuae ---------------------------------------------------------------------------------------------------- [290]
H.HALO ---------------------------------------------------------------------------------------------------- [289]
H._cutirubrum ---------------------------------------------------------------------------------------------------- [289]
AN._nidulans ---------------------------------------------------------------------------------------------------- [312]
HE.CHL ---------------------------------------------------------------------------------------------------- [296]
Bc._subtilis ---------------------------------------------------------------------------------------------------- [335]
MY.CAP ---------------------------------------------------------------------------------------------------- [331]
E._coli ---------------------------------------------------------------------------------------------------- [333]
MYX.XA ---------------------------------------------------------------------------------------------------- [332]
P.TEST ---------------------------------------------------------------------------------------------------- [334]
AG.TUM ---------------------------------------------------------------------------------------------------- [310]
DV.DES ---------------------------------------------------------------------------------------------------- [334]
BA.FRG ---------------------------------------------------------------------------------------------------- [331]
'Zea_mays_(chloroplast)' ---------------------------------------------------------------------------------------------------- [310]
T.AMIT ---------------------------------------------------------------------------------------------------- [318]
[ 810 820 830 840 850 860 870 880 890 900]
[ . . . . . . . . . .]
Homo_sapiens -------------------------AGGCCATGATT----------------------------------------AAGAGGGACGGCCGGGGGCATTCG [497]
Rattus_norvegicus -------------------------AGGCCATGATT----------------------------------------AAGAGGGACGGCCGGGGGCATTCG [498]
Xenopus_laevis -------------------------GGGCCATGATT----------------------------------------AAGAGGGACGGCCGGGGGCATTCG [493]
A._salina -------------------------AGGTAATGGTT----------------------------------------AACAGAGACAGACGGGGGCATTCG [494]
S._cerevisiae -------------------------TCGTAATGATT----------------------------------------AATAGGGACGGTCGGGGGCATCGG [489]
P.MICA -------------------------AGGTAATGATT----------------------------------------AATAGGGATAGTTGGGGGCATTCG [484]
D.DISC --------------------------TGTAATGATT----------------------------------------AATAGGGATGGATGGGGGTGTTCA [488]
T.BRUC TTTTTGTGGCGCGCACATTCGGCTCTTCGTGATGTTTTTTTACATTCATTGCGACGCGCGGCTTCCAGGAAT--GAAGGAGGGTAGTTCGGGGGAGAACG [673]
E.GRAC TTGCCCTGCCTGGCC--TTCGGGTCTCGTCAGGCTTCGTCCCCTGTCCCTGCAGCTTGCACCCATCGATCGTAAGTGATGGGACTGTTCGGGGTGAAAGA [788]
Zea_mays -------------------------GAGTAATGATT----------------------------------------AATAGGGACAGTCGGGGGCATTCG [490]
D._mobilis -------------------------------------------------------------------------------GGGGGTGGGAGAGGCCGAGGG [306]
S._solfataricus -------------------------------------------------------------------------------GGGGGCGGGAGAGGCGGGGGG [304]
T._tenax -------------------------------------------------------------------------------GGGGGCGGGAGAGGCCGCCGG [307]
M._vannielii -------------------------------------------------------------------------------GGGACCGGGAGAGGACAAGGG [307]
MB._formicicum -------------------------------------------------------------------------------GAGGCCGGGAGAGGTTAGCGG [309]
MS._hungatei -------------------------------------------------------------------------------GGGACCGGGAGAGGTGAGAGG [282]
H._volacanii -------------------------------------------------------------------------------GGGACCGGAAGGCTCGAGGGG [310]
HC._morrhuae -------------------------------------------------------------------------------GGGGCCGGGAGACCAGAGAGG [311]
H.HALO -------------------------------------------------------------------------------GGGACCGGAAGACCTGAGGGG [310]
H._cutirubrum -------------------------------------------------------------------------------GGGACCGGAAGACCTGAGGGG [310]
AN._nidulans -------------------------------------------------------------------------------GAGTATGGTAGGGGTAGCGGG [333]
HE.CHL -------------------------------------------------------------------------------GAGAGATGGAGAGGATAGCGG [317]
Bc._subtilis -------------------------------------------------------------------------------GAGTGCAGAAGAGGAGAGTGG [356]
MY.CAP -------------------------------------------------------------------------------GAATGCAAGAGAGGTAAGCGG [352]
E._coli -------------------------------------------------------------------------------GAGTCTCGTAGAGGGGGGTAG [354]
MYX.XA -------------------------------------------------------------------------------GAGTGCCGGA?AGGGTGGCGG [353]
P.TEST -------------------------------------------------------------------------------GAGTGCGGCAGAGGGGGATGG [355]
AG.TUM -------------------------------------------------------------------------------GAGTATGGAAGAGGTAAGTGG [331]
DV.DES -------------------------------------------------------------------------------GAATCCGGGAGAGGGTGGCGG [355]
BA.FRG -------------------------------------------------------------------------------GAGTACAGTAGAGGTGGGCGG [352]
'Zea_mays_(chloroplast)' -------------------------------------------------------------------------------GAGTACGGTAGGGGCAGAGGG [331]
T.AMIT -------------------------------------------------------------------------------GAGTGAGACAGAGGAGAGTGG [339]
[ 910 920 930 940 950 960 970 980 990 1000]
[ . . . . . . . . . .]
Homo_sapiens TATTGCGCCGCTA--GAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCG [595]
Rattus_norvegicus TATTGCGCCGCTA--GAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCG [596]
Xenopus_laevis TATTGTGCCGCTA--GAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCG [591]
A._salina TACTGCGACGCTA--GAGGTGAAATTCTTGGACCGTCGCAAGACGAACAACTGCGAACAAGTTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTTA [592]
S._cerevisiae TATT-CAATTGTC--GAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTTGCCAAGGACGTTTTCGTTAATCAAGAACGAAAGTTG [586]
P.MICA TATT-TAACTGGTCAGAGGTGAAATTCTCGGATTTGTTAAAGACGGACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTGATCAAGAACGAAAGTTA [583]
D.DISC TATTGGTGGGCGA--GAGGTGAAATTCGTTGACCCTATCAAGATGAACTTCTGCGAAAGCATTCACCAAATACTTCCCCATTAATCAAGAACGAAAGTTT [586]
T.BRUC TACT-GGTGCGTCA-GAGGTGAAATTCTTAGACCGCACCAAGACGAACTACAGCGAAGGCATTCTTCAAGGATACCTTCCTCAATCAAGAACCAAAGTGT [771]
E.GRAC TACG-GGAGCGCCA-GAGGTGAAATTCTTAGATCGCTGCCAGATCCACTGCAGCGAAGGCGTTCTGCAAGTGCACGTCCGTCGATCAAGAATGAGAGTTC [886]
Zea_mays TATTTCATAGTCA--GAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTG [588]
D._mobilis TACTCCCGGGGTA--GGGGCGAAATCCTATAATCCCGGGAGGACCACCAGTGGCGAAGGCGCTCGGCTGGAACACGCCCGACGGTGAGGGGCGAAAGCCG [404]
S._solfataricus TACTCCCGGAGTA--GGGGCGAAATCCTTAGATACCGGGAGGACCACCAGTGGCGGAAGCGCCCCGCTAGAACGCGCCCGACGGTGAGAGGCGAAAGCCG [402]
T._tenax TACTCCGGGGGTA--GGGGCGAAATCCTATAATCCCCGGAGGACCACCAGTGGCGAAAGCGGGCGGCCAGAACGCGCCCGACGGTGAGGGGCGAAAGCCG [405]
M._vannielii TACTCCAGGGGTA--GCGGTGAAATGTGTTGATCCTTGGAGGACCACCTATGGCGAAGGCACTTGTCTGGAACGGGTCCGACGGTGAGGGACGAAAGCCA [405]
MB._formicicum TACTCCCGGGGTA--GGGGTGAAATCCTATAATCCCGGGAGGACCACCTGTGGCGAAGGCGGCTAACTGGAACGGGCCTGACGGTGAGTAACGAAAGCCA [407]
MS._hungatei TACTGCCGGGGTA--GGAGTGAAATCCTGTAATCCCGGTGGGACCACCTATGGCGAAGGCATCTCACCAGAACGGGTCCGACAGTGAGGGACGAAAGCTG [380]
H._volacanii TACGTCCGGGGTA--GGAGTGAAATCCCGTAATCCTGGACGGACCACCGATGGCGAAAGCACCTCGAGAAGACGGATCCGACGGTGAGGGACGAAAGCTA [408]
HC._morrhuae TACGTCCGGGGTA--GGAGTGAAATCCTGTAATCCTGGACGGACCACCGGTAGCGAAAGCGTCTCTGGAGAACGGACCCGACGGTGAGGGACGAAAGCTT [409]
H.HALO TACGTCTGGGGTA--GGAGTGAAATCCTGTAATCCTGGACGGACCGCCGGTGGCGAAAGCGCCTCAGGAGAACGGATCCGACAGTGAGGGACGAAAGCTA [408]
H._cutirubrum TACGTCTGGGGTA--GGAGTGAAATCCTGTAATCCTGGACGGACCGCCGGTGGCGAAAGCGCCTCAGGAGAACGGATCCGACAGTGAGGGACGAAAGCTA [408]
AN._nidulans AATTCCAGGTGTA--GCGGTGAAATGCGTAGATATCTGGAAGAACACCAGCGGCGAAAGCGCGCTACTGGGCCATAACTGACGCTCATGGACGAAAGCTA [431]
HE.CHL AATTCCCGGTGTA--GCGGTGAAATGCGTAGATATCGGGAGGAACACCCGTGGCGAAGGCGGCTATCTGGACATTATCTGACGCTGAGGCGCGAAAGCGT [415]
Bc._subtilis AATTCCACGTGTA--GCGGTGAAATGCGTAGAGATGTGGAGGAACACCAGTGGCGAAGGCGGCTCTCTGGTCTGTAACTGACGCTGAGGAGCGAAAGCGT [454]
MY.CAP AATTCCATGTGTA--GCGGTGAAATGCGTAGATATATGGAAGAACACCTGTGGCGAAAGCGGCTTACTGGCTTGTTATTGACGCTGAGGCACGAAAGCGT [450]
E._coli AATTCCAGGTGTA--GCGGTGAAATGCGTAGAGATCTGGAGGAATACCGGTGGCGAAGGCGGCCCCCTGGACGAAGACTGACGCTCAGGTGCGAAAGCGT [452]
MYX.XA AATTCCCCAAGTA--GAGGTGAAATTCGTAGATATGGGGAGGAACACCGGTGGCGAAGGCGGCCACCTGGACGGTAACTGACGCTGAGACGCGAAAGCGT [451]
P.TEST AATTCCGCGTGTA--GCAGTGAAATGCGTAGATATGCGGAGGAACACCGATGGCGAAGGCAATCCCCTGGGCCTGCACTGACGCTCATGCACGAAAGCGT [453]
AG.TUM AATTCCGAGTGTA--GAGGTGAAATTCGTAGATATTCGGAGGAACGCCAGTGGCGAAGGCGGCTTACTGGTCCATTACTGACGCTGAGGTGCGAAAGCGT [429]
DV.DES AATTCCAGGTGTA--GGAGTGAAATCCGTAGATATCTGGAGGAACATCAGTGGCGAAGGCGGCCACCTGGACCGGTATTGACGCTGAGGTGCGAAAGCGT [453]
BA.FRG AATTCGTGGTGTA--GCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGT [450]
'Zea_mays_(chloroplast)' AATTTCCGGTGGA--GCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTA [429]
T.AMIT AATTTCGTGTGTA--GGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCAT [437]
[ 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100]
[ . . . . . . . . . .]
Homo_sapiens GAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCG--ACCATAAACGATGCCGACCGGCG-------------ATGCGGCG------------------ [662]
Rattus_norvegicus GAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCG--ACCATAAACGATGCCGACTGGCG-------------ATGCGGCG------------------ [663]
Xenopus_laevis GAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCG--ACCATAAACGATGCCGACTAGCG-------------ATCCGGCG------------------ [658]
A._salina GAGGTTCGAAGGCGATCAGATACCGCCCTAGTTCTA--ACCATAAACGATGCCAACCAGCG-------------ATCCGCGG------------------ [659]
S._cerevisiae AGGGATCGAAGACGATCTGATACCGTCGTAGTCTTA--ACCATAAACTATGCCGACTAG---------------ATCGGGTG------------------ [651]
P.MICA GGGGATCGAAGACGATCAGATACCGTCCTAGTCTTA--ACCATAAACCATGCCGACTAG-------------AGATTGGAGG------------------ [650]
D.DISC GGGGATCGAAGACGATCAGATACCGTCGTAGTCCAA--ACTATAAACTATGTCGACCAGGG-------------ATCGGTTA------------------ [653]
T.BRUC GGGGATCAAAGATGATTAGAGACCATTGTAGTCCAC--ACTGCAAACCATGACACCCATGAATTGGGGAACATCATTGGGTGCCCGTGTGGCGGCCTTTT [869]
E.GRAC GGGGAGCAAAGATGATCAGACACCGTCGTAGTCCGGCCACTGTAAACGATGCCGGCCAGGCCTTGGCAGA-GCAA--GAATC------------------ [965]
Zea_mays GGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCA--ACCATAAACGATGCCGACCAGGG-------------AT-CAGCG------------------ [654]
D._mobilis GGGGAGCGAACCGGATTAGATACCCGGGTAGTCCCG--GCTGTAAACGATGCGGGCTAGGT-------------GTTGGGTG------------------ [471]
S._solfataricus GGGCAGCAAACGGGATTAGATACCCCGGTAGTCCCG--GCTGTAAACGATGCGGGCTAGGT-------------GTCGAGTA------------------ [469]
T._tenax GGGGAGCAAAGGGGATTAGATACCCCTGTAGTCCCG--GCCGTAAACGATGCGGGCTAGCT-------------GTCGGCCG------------------ [472]
M._vannielii GGGGCGCGAACCGGATTAGATACCCGGGTAGTCCTG--GCCGTAAACTCTGCGAACTAGGT-------------GTCACCTG------------------ [472]
MB._formicicum GGGGCGCGAACCGGATTAGATACCCGGGTAGTCCTG--GCCGTAAACGATGTGGACTTGGT-------------GTTGGGAT------------------ [474]
MS._hungatei GGGGAGCAAACCGGATTAGATACCCGGGTAGTCCCA--GCTGTAAACGATGCGCGTTAGGT-------------GTGTCAGT------------------ [447]
H._volacanii GGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTA--GCTGTAAACGATGCTCGCTAGGT-------------GTGACACA------------------ [475]
HC._morrhuae GGGTCTCGAACCGGATTAGATACCCGGGTAGTCCAA--GCTGTAAACGATGCTCGCTAGGT-------------GTGGCGTT------------------ [476]
H.HALO GGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTA--GCTGTAAACGATGTCCGCTAGGT-------------GTGGCGCA------------------ [475]
H._cutirubrum GGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTA--GCTGTAAACGATGTCCGCTAGGT-------------GTGGCGCA------------------ [475]
AN._nidulans GGGGAGCGAAAGGGATTAGATACCCCTGTAGTCCTA--GCCGTAAACGATGAACACTAGGT-------------GTTGCG-T------------------ [497]
HE.CHL GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGAGTGCTAGGT-------------GTTGGG-G------------------ [481]
Bc._subtilis GGGGAGCGAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGAGTGCTAAGT-------------GTTAGG-G------------------ [520]
MY.CAP GGGGAGCAAATAGGATTAGATACCCTAGTAGTCCAC--GCCGTAAACGATGAGTACTAAGT-------------GTTGGG-G------------------ [516]
E._coli GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGTCGACTTGGA-------------GGTTGT-G------------------ [518]
MYX.XA GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGAGAACTAGGT-------------GTCGTG-G------------------ [517]
P.TEST GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCCTAAACGATGTCAACTGGTT-------------GTTGGG-T------------------ [519]
AG.TUM GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGAATGTTAGCC-------------GTCGGG-C------------------ [495]
DV.DES GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCTGTAAACGATGGATGCTAGAT-------------GTCGGG-G------------------ [519]
BA.FRG GGGTATCAAACAGGATTAGATACCCTGGTAGTCCAC--ACAGTAAACGATGAATACTCGCT-------------GTTTGC-G------------------ [516]
'Zea_mays_(chloroplast)' GGGGAGCAAATGGGATTAGAGACCCCAGTAGTCCTA--GCCGTAAACGATGGATACTAGGT-------------GCTGTG-C------------------ [495]
T.AMIT GGGGAGCGAACAGGATTAGATACCCTGGTAGTCCAT--GCCGTAAACGATG---------A-------------GTGTTC-G------------------ [494]
[ 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200]
[ . . . . . . . . . .]
Homo_sapiens -----------------------------------------------------------------------------------------------GCGTT [667]
Rattus_norvegicus -----------------------------------------------------------------------------------------------GCGTT [668]
Xenopus_laevis -----------------------------------------------------------------------------------------------GCGTT [663]
A._salina -----------------------------------------------------------------------------------------------ACGTT [664]
S._cerevisiae -----------------------------------------------------------------------------------------------GTGTT [656]
P.MICA -----------------------------------------------------------------------------------------------TCGTT [655]
D.DISC -----------------------------------------------------------------------------------------------AAATT [658]
T.BRUC GTGCCGACCCTCGGCCCCAATTTATTTATCAATTTACGTGCCTATTCTATCACCCCCGGTTCCCTCTTTTGAGGTTCTTCCGGGGTTTTTTACGGGAATA [969]
E.GRAC -----------------------------------------------------------------------------------------------CTAGA [970]
Zea_mays -----------------------------------------------------------------------------------------------GTGTT [659]
D._mobilis -----------------------------------------------------------------------------------------------GGCTT [476]
S._solfataricus -----------------------------------------------------------------------------------------------GGCTT [474]
T._tenax -----------------------------------------------------------------------------------------------GGCTT [477]
M._vannielii -----------------------------------------------------------------------------------------------GGCCT [477]
MB._formicicum -----------------------------------------------------------------------------------------------GGCTC [479]
MS._hungatei -----------------------------------------------------------------------------------------------GACCA [452]
H._volacanii -----------------------------------------------------------------------------------------------GGCTA [480]
HC._morrhuae -----------------------------------------------------------------------------------------------GGCTA [481]
H.HALO -----------------------------------------------------------------------------------------------GGCTA [480]
H._cutirubrum -----------------------------------------------------------------------------------------------GGCTA [480]
AN._nidulans -----------------------------------------------------------------------------------------------GAATC [502]
HE.CHL -----------------------------------------------------------------------------------------------GTATC [486]
Bc._subtilis -----------------------------------------------------------------------------------------------GGTTT [525]
MY.CAP -----------------------------------------------------------------------------------------------TAACT [521]
E._coli -----------------------------------------------------------------------------------------------CCCTT [523]
MYX.XA -----------------------------------------------------------------------------------------------GAGTT [522]
P.TEST -----------------------------------------------------------------------------------------------CTTAA [524]
AG.TUM -----------------------------------------------------------------------------------------------AGTAT [500]
DV.DES -----------------------------------------------------------------------------------------------AGTAT [524]
BA.FRG -----------------------------------------------------------------------------------------------ATATA [521]
'Zea_mays_(chloroplast)' -----------------------------------------------------------------------------------------------GACTC [500]
T.AMIT -----------------------------------------------------------------------------------------------CCCTT [499]
[ 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300]
[ . . . . . . . . . .]
Homo_sapiens ATTCCCATG--ACCC-GCCGGGCAGCTT----CCGGGAAA--CCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAAT [756]
Rattus_norvegicus ATTCCCATG--ACCC-GCCGGGCAGCTT----CCGGGAAA--CCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAAT [757]
Xenopus_laevis ATTCCCATG--ACCC-GCCGAGCAGCTT----CCGGGAAA--CCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAAT [752]
A._salina ACTTGAATG--ACTC-CGCGGGCAGCTT----CCGGGAAA--CCA--AAGTGTTTGGGTTCCGGGGGAAGTATGGTTGCAAAGCTGAAACTTAAAGGAAT [753]
S._cerevisiae TTTTTAATG--ACCC-ACTCGGTACCTT----ACGAGAAA--TCA--AAGTCTTTGGGTTCTGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAAT [745]
P.MICA ATCTATACG--ACTC-CTTCAGCACCTT----ATGAGAAA--TCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAAT [744]
D.DISC TTTTCAA-A--ATTT-AATCGGCACCTT----GTGAGAAA--TCAT-GAGTGTTTAGATTCCGGGGGGAGTATGGTCGCAAGTCTGAAACTTAAAGGAAT [747]
T.BRUC TCCTCAGCA--CGTT-TCTTACTTCTTC----ACGCGAAAGCTTG--GAGGTTACAGTCTCAGGGGGGAGTACGTTCGCAAGAGTGAAACTTAAAGAAAT [1060]
E.GRAC CTCTGTCAG--GGCC-ACTCCTCCCACA----ACGAGAAA-TCCA--CAGCCTGTGGGTTCAGGGGGGAGTACTGTCGCAAGGCTGAAACTTAAAGGAAT [1060]
Zea_mays ACTAATAGG--ACCCCGCTGGCCACCTT----ATGAGAAA--TCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAGGGCTAAAACTTAAAGGAAT [749]
D._mobilis ------AGA--GCCC-ACCCAGTGCCGC----A-GGGAAG--CCGTTAAGCCCGCCGCCT----GGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAAT [556]
S._solfataricus ------AGA--GCCT-ACTCGGTGCCGC----A-GGGAAG--CCGTTAAGCCCGCCGCCT----GGGGAGTACGGTCGCAAGACTGAAACTTAAAGGAAT [554]
T._tenax ------AGG--GCCC-GGCCGGTGGCGT----A-GGGAAA--CCGTTAAGCCCGCCGCCT----GGGGAGTACGGCCGCAAGGCTGAAACTTAAAGGAAT [557]
M._vannielii ------CGA--GCCC-AGGTGGTGCCGA----A-GGGAAG--CCGTTAAGTTCGCCGCCT----GGGGAGTACGGTCGCAAGACTGAAACTTAAAGGAAT [557]
MB._formicicum ------CGA--GCTG-CCCCAGTGCCGA----A-GGGAAG--CTGTTAAGTCCACCGCCT----GGGAAGTACGGTCGCAAGACTGAAACTTAAAGGAAT [559]
MS._hungatei ------CGT--GTCA-CTGAGGTGCCGA----A-GGGAAA--CCGTGAAACGCGCCGCCT----GGGGAGTACGGTCGCAAGGCTGAAACTTAAAGGAAT [532]
H._volacanii ------CGA--GCCT-GTGTTGTGCCGT----A-GGGAAG--CCGAGAAGCGAGCCGCCT----GGGAAGTACGTCCGCAAGGATGAAACTTAAAGGAAT [560]
HC._morrhuae ------CGA--GCCA-GCGCTGTGCCGT----A-GGGAAG--CCGAGAAGCGAGCCGCCT----GGGAAGTACGTCCGCAAGGATGAAACTTAAAGGAAT [561]
H.HALO ------CGA--GCCT-GCGCTGTGCCGT----A-GGGAAG--CCGAGAAGCGGACCGCCT----GGGAAGTACGTCTGCAAGGATGAAACTTAAAGGAAT [560]
H._cutirubrum ------CGA--GCCT-GCGCTGTGCCGT----A-GGGAAG--CCGAGAAGCGGACCGCCT----GGGAAGTACGTCTGCAAGGATGAAACTTAAAGGAAT [560]
AN._nidulans ------GAC--CCGC---GCAGTGCCGT----A-GCCAAC--GCGTTAAGTGTTCCGCCT----GGGGAGTACGCACGCAAGTTGGAAACTCAAAGGAAT [580]
HE.CHL ------GAC--CCCC---CCGGTGCCGC----A-GTTCAC--GCAATAAGCACTCCGCCT----GGGGAGTACGGCCGCAAGGTTGAAACTCAAAGGAAT [564]
Bc._subtilis ------CCG--CCCC---TTAGTGCTGC----A-GCTAAC--GCATTAAGCACTCCGCCT----GGGGAGTACGGTCGCAAGACTGAAACTCAAAGGAAT [603]
MY.CAP ------C-------------AGCGCTGC----A-GCTAAC--GCATTAAGTACTCCGCCT----GAGTAGTATGCTCGCAAGAGTGAAACTCAAAGGAAT [591]
E._coli ------GAG--GCG----TGGCTTCCGG----A-GCTAAC--GCGTTAAGTCGACCGCCT----GGGGAGTACGGCCGCAAGGTTAAAACTCAAATGAAT [600]
MYX.XA ------GAC--CCCC---GCGGTGCCGA----A-GCTAAC--GCATTAAGTTCTCCGCCT----GGGAAGTACGGTCGCAAGACTAAAACTCAAAGGAAT [600]
P.TEST ------CTG--ACTC-----AGTAACGA----A-GCTAAC--GCGTGAAGTTGACCGCCT----GGGGAGTACGGCCGCAAGGTTGAAACTCAAAGGAAT [600]
AG.TUM --------A--CTGT---TCGGTGGCGC----A-GCTAAC--GCATTAAACATTCCGCCT----GGGGAGTACGGTCGCAAGATTAAAACTCAAAGGAAT [576]
DV.DES ------TC------T---TCGGTGTCGT----A-GTTAAC--GCGTTAAGCATCCCGCCT----GGGGAGTACGGTCGCAAGGCTGAAACTCAAAGAAAT [598]
BA.FRG ------CAG---------TAAGCGGCCA----A-GCGAAA--GCATTAAGTATTCCACCT----GGGGAGTACGCCGGCAACGGTGAAACTCAAAGGAAT [595]
'Zea_mays_(chloroplast)' ------GAC--CCGT---GCAGTGCTGT----A-GCTAAC--GCGTTAAGTATCCCGCCT----GGGGAGTACGTTCGCAAGAATGAAACTCAAAGGAAT [578]
T.AMIT ------GGTCTACG----CGGATCAGGGGCCCA-GCTAAC--GCGTGAAACACTCCGCCT----GGGGAGTACGGTCGCAAGACCGAAACTCAAAGGAAT [582]
[ 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400]
[ . . . . . . . . . .]
Homo_sapiens TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACA----------------CGG-A-C [838]
Rattus_norvegicus TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACA----------------CGG-A-C [839]
Xenopus_laevis TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACA----------------CGG-A-A [834]
A._salina TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCAGGCCCGGACA----------------CTG-G-A [835]
S._cerevisiae TGACGGAAGGGCACCACTAGGAGTGGAGCCTGCGGCT-AATTTGACTCAACACGGGGAAACTCACCAGGTCCAGACA----------------CAA-T-A [826]
P.MICA TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACA----------------TAG-T-A [826]
D.DISC TGACGGAAGGGCACACAATGGAGTGGAGCCTGCGGCTTAATTTGACTCAACTCGGGAAAACTTACCAAGCTAAGATA----------------TAG-T-A [829]
T.BRUC TGACGGAATGGCACCACAAGACGTGGAGCGTGCGGTTTAATTTGACTCAACACGGGGAACTTTACCAGATCCGGACA----------------GGG-T-G [1142]
E.GRAC TGACGGAATGGCACCACAAGGCGTGGAGTATGCGGCTTAATTTGACTCAACGCGGGGAATGTTACCAGGTCAGGACG----------------CAA-C-T [1142]
Zea_mays TGACGGAAGGGCACCACCAGGCGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACA----------------TAG-C-A [831]
D._mobilis TGGCGGGGGAGCACCACAAGGGGTGGAGCCTGCGGTTCAATTGGAGTCAACGCCGGGAATCTCACCGGGGGA-GACA----------------GCA-G-G [637]
S._solfataricus TGGCGGGGGAGCACCACAAGGGGTGGAACCTGCGGCTCAATTGGAGTCAACGCCTGGAATCTTACCGGGGGA-GACC----------------GCA-G-T [635]
T._tenax TGGCGGGGGGGCACCACAAGGGGTGAAGCTTGCGGCTTAATTGGAGTCAACGCCGGAAACCTTACCCGGGGC-GACA----------------GCA-G-G [638]
M._vannielii TGGCGGGGGAGCACCACAACGGGTGGAGCCTGCGGTTTAATTGGATTCAACGCCGGGCATCTCACCAGGAGC-GACA----------------GCA-T-G [638]
MB._formicicum TGGCGGGGGAGCACCACAACGCGTGGAGCCTGCGGTTTAATTGGATTCAACGCCGGACATCTCACCAGGGGC-GACA----------------GCA-G-A [640]
MS._hungatei TGGCGGGGGAGCACCACAACGGGTGGAGCCTGCGGTTTAATCGGACTCAACGCCGGAAATCTCACCGGATAA-GACA----------------GCT-G-A [613]
H._volacanii TGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCACCAGCTCC-GACT----------------ACA-GTG [642]
HC._morrhuae TGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCTCCGGCACC-GACA----------------GTGTGCA [644]
H.HALO TGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCACCAGCCCC-GACA----------------GTA-GTA [642]
H._cutirubrum TGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCACCAGCCCC-GACA----------------GTA-GTA [642]
AN._nidulans TGACGGGGGCCCGC-ACAAGCGGTGGAGTATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCAGGGTTTGACAT-----CC----CCCGAAT-C-T [668]
HE.CHL TGACGGGGGCCCGC-ACAAGCGTTGGAGCATGTGGTTTAATTCGACGCAACGCGAAGAACCTTACCAAGGCTTGACAT-----CC----TCTGAAT-C-C [652]
Bc._subtilis TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACAT-----CC----TCTGACA-A-T [691]
MY.CAP TGACGGGGACCCGC-ACAAGTGGTGGAGCATGTGGTTTAATTCGAAGCAACACGAAGAACCTTACCAGGGCTTGACAT-----CC----AGTGTAA-A-G [679]
E._coli TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACAT-----CC----ACGGAAG-T-T [688]
MYX.XA TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGACGCAACGCGCAGAACCTTACCTGGTCTTGACAT-----CC----TCAGAAT-C-C [688]
P.TEST TGACGGGGACCCGC-ACAAGCGGTGGATGATGTGGTTTAATTCGATGCAACGCGAAAAACCTTACCCACCTTTGACAT-----GG----CAGGAAC-T-T [688]
AG.TUM TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCAGCTCTTGACAT-----TCGGGGTTTGGGC-A-G [668]
DV.DES TGACGGGGGCCCGC-ACAAGCGGTGGAGTATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTAGGTTTGACAT-----CC---ACGGAACC-C-T [687]
BA.FRG TGACGGGGGCCCGC-ACAAGCGGAGGAACATGTGGTTTAATTCGATGATACGCGAGGAACCTTACCCGGGCTTAAATT-----GC----AGTGGAA-T-G [683]
'Zea_mays_(chloroplast)' TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAGGCGAAGAACCTTACCAGGGCTTGACAT-----GC----CGCGAAT-C-C [666]
T.AMIT TGACGGGGGCCTGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACATATGAACA----ACAAAAC-C-T [675]
[ 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500]
[ . . . . . . . . . .]
Homo_sapiens AG-GATTGACA--G-ATTGA--TAGCTCTTTCTC-GATTC--CGTGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC [928]
Rattus_norvegicus AG-GATTGACA--G-GTTGA--TAGCTCTTTCTC-GATTC--CGTGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC [929]
Xenopus_laevis AG-GATTGACA--G-ATTGA--TAGCTCTTTCTC-GATTC--TGTGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC [924]
A._salina AG-GATTGACA--G-ATTGA--GAGCTCTTTCTT-GATTC--AGTGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC [925]
S._cerevisiae AG-GATTGACA--G-ATTGA--GAGCTCTTTCTT-GATTT--TGTGGGTGGTGGTGCATGGCCGTTTCTCAGTTGGTGGAGTGATTTGTCTGCTTAATTG [917]
P.MICA AG-GATTGACA--G-ATTGA--TAGCTCTTTCTT-GATTC--TATGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGTGATTTGTCTGGTTAATTC [916]
D.DISC AG-GATTGACA--G-ACTAA--AAGATCTTTCAT-GATTC--TATAAGTGGTGGTGCATGGTCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTCAATTC [919]
T.BRUC AG-GATTGACA--G-ATGGA--GTGTTCTTTCTC-GATCC--CCTGAATGGTGGTGCATGGCCGCTTTT-GGTCGGTGGAGTGATTTGTTTGGTTGATTC [1232]
E.GRAC GG-GATTGACA--G-ATTGA--GAGCTCTTTCTT-GATCT--TGTGGACGGTGGTGCATGGCCGCTCCTGA-TTGGTGGAGTGATTTGTCTGGTTGATTC [1232]
Zea_mays AG-GATTGACA--G-ACTGA--GAGCTCTTTCTT-GATTC--TATGGGTGGTGGTGCATGGTCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC [921]
D._mobilis AT-GACGGCCA--G-GTTAA--AG-C-CTTGCCT-GACGC--GCTGAGAGGAGGTGCATGGCCGTC-GCCAGCTCGTGCTGTGAAGTGTCCGGTTAAGTC [725]
S._solfataricus AT-GACGGCCA--G-GCTAA--CGAC-CTTGCCT-GACTC--GCGGAGAGGAGGTGCATGGCCGTC-GCCAGCTCGTGTTGTGAAATGTCCGGTTAAGTC [724]
T._tenax AT-GAAGGCCA--G-GCTAA--CGAC-CTTGCCG-GACGA--GCTGAGAGGAGGTGCATGGCCGTC-GTCAGCTCGTGCCGTGAGGTGTCCGGTTAAGTC [727]
M._vannielii AT-GACGGCCA--G-GTTGA--CGAC-CTTGCCT-GAAGC--GCTGAGAGGTGGTGCATGGCCATC-GTCAGCTCGTACCGCGAGGCGTCCTGTTAAGTC [727]
MB._formicicum AT-GATAGCCA--G-GTTGA--TGAC-CTTGCTT-GACAA--GCTGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC [729]
MS._hungatei AT-GATAGTCG--G-GATGA--AGAC-TCTACTT-GACTA--GCTGAGAGGAGGTGCATGGCCGTC-GTCAGTTCGTACTGTGAAGCATCCTGTTTAGTC [702]
H._volacanii AT-GACGATCA--G-GTTGA--TGAC-CTTATCA-CGACGCTGTAGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC [733]
HC._morrhuae GT-GACAGTCA--G-TCCGA--TGGG-CTTACTT-GA--GCCACTGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC [733]
H.HALO AT-GACGGTCA--G-GTTGA--TGAC-CTTACCC-G-AGGCTACTGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC [732]
H._cutirubrum AT-GACGGTCA--G-GTTGA--TGAC-CTTACCC-GGAGGCTACTGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC [733]
AN._nidulans CT-TGGAAACG--A-GAGAG--TGCC-TTCGGGA-GCGGG--G-AGACAGGTGGTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [756]
HE.CHL GA-TAGAGATA--GCGGAGT--GCCC-TTCGGGGAGCAGA--G-AGACAGGTGGTGCATGGTTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [742]
Bc._subtilis CC-TAGAGATA--G-GACGT--CCCC-TTCGGGG-GCAGA--G-TGACAGGTGGTGCATGGTTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [779]
MY.CAP CTATAGAGATA--T-AGTAG--AGGT-T-----A-ACATT--G-AGACAGGTGGTGCATGGTTGTC-GTCAGTTCGTGCCGTGAGGTGTTGGGTTAAGTC [763]
E._coli TT-CAGAGATG--A-GAATG--TGCC-TTCGGGA-ACCGT--G-AGACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTC [776]
MYX.XA TT-CAGAGATGAGG-GAGTG--CCCG-CAAGGGA-ACTGA--G-AGACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [778]
P.TEST AC-CAGAGATG--G-TTTGGTGCTCG-AAAGAGA-ACCTG--C-ACACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [778]
AG.TUM TG-GAGACATT--G-TCCTT--CAGT-TAGGCTG-GCCCC--A-GAACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [756]
DV.DES CC-CGAAAAGG--A-GGGGT--GCCC-TTCGGGGAGCCGT--G-AGACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [776]
BA.FRG ATGTGGAAACA--T-GTCAG--TGAG-CAATCAC--CGCT--G-TGA-AGGTGCTGCATGGTTGTC-GTCAGCTCGTGCCGTGAGGTGTCGGCTTAAGTG [770]
'Zea_mays_(chloroplast)' TC-TTGAAAGA--G-AGGGG--TGCC-CTCGGGA-ACGCG--G-ACACAGGTGGTGCATGGCTGTC-GTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTC [754]
T.AMIT GT-CCTTAACA--G-GATGG--TACT-------G-ACTTT--C-ATACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTC [757]
[ 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600]
[ . . . . . . . . . .]
Homo_sapiens CGATAACGAACGAGACTCTGGCATGCTAA-CTAGTT-AC--G--------------------------------------C-GACC----------CCCG [975]
Rattus_norvegicus CGATAACGAACGAGACTCTGGCATGCTAA-CTAGTT-AC--G--------------------------------------C-GACC----------CC-G [975]
Xenopus_laevis CGATAACGAACGAGACTCCTCCATGCTAA-CTAGTT-AC--G--------------------------------------C-GACC----------CC-C [970]
A._salina CGATAACGAACGAGACTCTAGCCTGCTAA-ATAG-A-CG--ATGGATC--------------------------------C-TAGT----------GG-T [976]
S._cerevisiae CGATAACGAACGAGACCTTAACCTACTAA-ATAGTG-GT--G--------------------------------------C-TAGC----------AT-T [963]
P.MICA CGTTAACGAACGAGACCTTAACCTGCTAA-ATAGTT-AC--A--------------------------------------CGTAAC----------TC-C [963]
D.DISC CGATAACGGACGAGACCTCGACCTGCTAA-CTAGTA-GT--ATTTATTAGTCGATATAGACGATAGCTTTTCTGGGGTTTG-GAAT----------GA-T [1003]
T.BRUC CGTCAACGGACGAGATCC-AAGCTGCCCA-GTAG---GT--G--------------------------------------C-CGGG----------AT-T [1275]
E.GRAC CGATAACGAGTGAGACATCTGCCTCCCACTAGCCTG-AG--G--------------------------------------C-TCGC----------AT-T [1279]
Zea_mays CGTTAACGAACGAGACCTCAGCCTGCTAA-CTAGCT-AT--G--------------------------------------C-GGAG----------CC-A [967]
D._mobilis CGGAAACGAGCGAGACCCCCACCC-CTAG-TTGCTA-CC--C-----------------------------------------GGG----------GC-T [768]
S._solfataricus CGGCAACGAGCGAGACCCCCACCC-CTAG-TTGGTA-TT--C-----------------------------------------TGG----------AC-T [767]
T._tenax CGGCAACGAGCGAGACCCCCACCC-CTAG-TTGCTA-CC--C-----------------------------------------CGC----------TC-T [770]
M._vannielii AGGTAACGAGCGAGACCCGTGCCC-TATG-TTGCGA-CT--A-----------------------------------------CTT----------TC-T [770]
MB._formicicum AGGCAACGAGCGAGACCCACGCCC-TTAG-TTACCA-GC--G-----------------------------------------GAT----------CC-T [772]
MS._hungatei AGGCAACGAGCGAGACCCACGCGA-GCAG-TTGCCAGCT--T-----------------------------------------GAC----------CT-T [746]
H._volacanii AGGCAACGAGCGAGACCCGCACTT-CTAA-TTGCCA-GCAGC-----------------------------------------CAG----------T--T [777]
HC._morrhuae AGGCAACGAGCGAGACCCGCGTCC-CTAA-TTGCCA-GCAGC-----------------------------------------CAG----------CC-T [778]
H.HALO AGGCAACGAGCGAGACCCGCACTC-CTAA-TTGCCA-GCGGT-----------------------------------------TAC----------CC-T [777]
H._cutirubrum AGGCAACGAGCGAGACCCGCACTC-CTAA-TTGCCA-GCAGT-----------------------------------------TAC----------CC-T [778]
AN._nidulans CCGCAACGAGCGCAACCCACGTTT-TTAG-TTGCCA-TC--A-----------------------------------------TTC----------AG-T [799]
HE.CHL CCGCAACGAGCGCAACCCTTATCC-CTAG-TTGCCA-GCG-A-----------------------------------------GAG----------AG-T [786]
Bc._subtilis CCGCAACGAGCGCAACCCTTGATC-TTAG-TTGCCA-GC--A-----------------------------------------TTC----------AG-T [822]
MY.CAP CCGCAACGAACGCAACCCTTGTCG-TTAG-TTACTA-AC--A-----------------------------------------TTA----------AG-T [806]
E._coli CCGCAACGAGCGCAACCCTTATCC-TTTG-TTGCCA-GC--G-G---------------------------------------TCC----------GG-C [820]
MYX.XA CCGCAACGAGCGCAACCCTCGCCT-TTAG-TTGCCA-----------------------------------------------CGC----------AA-G [818]
P.TEST CCGCAACGAGCGCAACCCTTGCCA-TTAG-TTGCTA--C--A-----------------------------------------TTC----------AG-T [820]
AG.TUM CCGCAACGAGCGCAACCCTCGCCC-TTAG-TTGCCA-GC--A-----------------------------------------TTT----------AG-T [799]
DV.DES CCGCAACGAGCGCAACCCCTATGG-ATAG-TTGCCA-GC--AAG---------------------------------------TAA----------TG-T [821]
BA.FRG CCATAACGAGCGCAACCCTTATCT-TTAG-TTACTA-AC--AGG---------------------------------------TTA----------TG-C [815]
'Zea_mays_(chloroplast)' TCGCAACGAGCGCAACCCTCGTGT-TTAG-TTGCCA-CT--A------------------------------------------TG----------AG-T [796]
T.AMIT CTATAACGAGCGAAACCCTCGTTT-TGTG-TTGCTG-AG--A-C---------------------------------------ATGCGC????GTGCG-T [811]
[ 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700]
[ . . . . . . . . . .]
Homo_sapiens AGCGGTCGGCGT---------------------------------------------------------------------------CCCCC-------- [992]
Rattus_norvegicus AGCGCTCGGCGT---------------------------------------------------------------------------CCCCC-------- [992]
Xenopus_laevis GGCGGTCGGCGT---------------------------------------------------------------------------CCA---------- [985]
A._salina GG-----ATCGC---------------------------------------------------------------------------T------------ [984]
S._cerevisiae TG---CTGGTTA---------------------------------------------------------------------------TCC---------- [975]
P.MICA GG---TTACGTG---------------------------------------------------------------------------GGC---------- [975]
D.DISC TTCGGTCATCTC---------------------------------------------------------------------------CTGCTTCAAGGAG [1028]
T.BRUC GT---CCACACA----------GGACAGCAGTCCCTCCGGC-----GGGGATTTTTTCCCCAACG-GTGGTCGTCATCCTTCTTTTTACA---------- [1346]
E.GRAC TG---GTAGGGTTCGGCTGCTCGG-TGGCAGCCCC-CTGGCAACAGGGGGAGATGTACCGGTGCATGCTCCCGAGAGCCTCCAGT--TCA---------- [1362]
Zea_mays TC---CCGCTAG---------------------------------------------------------------------------TTA---------- [979]
D._mobilis AC---GGCTCCG---------------------------------------------------------------------------GGG---------- [780]
S._solfataricus CC---CGGTCCA---------------------------------------------------------------------------GAA---------- [779]
T._tenax TC---GGGGCGG---------------------------------------------------------------------------GGG---------- [782]
M._vannielii CC---GGAA-GG---------------------------------------------------------------------------TAA---------- [781]
MB._formicicum TC---GGGATGC---------------------------------------------------------------------------CGG---------- [784]
MS._hungatei CG---GGTT-GA---------------------------------------------------------------------------TGG---------- [757]
H._volacanii TC---GACTGGC---------------------------------------------------------------------------TGG---------- [789]
HC._morrhuae TG---TGCTGGC---------------------------------------------------------------------------TGG---------- [790]
H.HALO TT---GGGTAGC---------------------------------------------------------------------------TGG---------- [789]
H._cutirubrum TT---GGGTAGC---------------------------------------------------------------------------TGG---------- [790]
AN._nidulans T---------------------------------------------------------------------------------------GG---------- [802]
HE.CHL C---------------------------------------------------------------------------------------GG---------- [789]
Bc._subtilis T---------------------------------------------------------------------------------------GG---------- [825]
MY.CAP T---------------------------------------------------------------------------------------GA---------- [809]
E._coli C---------------------------------------------------------------------------------------GG---------- [823]
MYX.XA T---------------------------------------------------------------------------------------GG---------- [821]
P.TEST T---------------------------------------------------------------------------------------GA---------- [823]
AG.TUM T---------------------------------------------------------------------------------------GG---------- [802]
DV.DES T---------------------------------------------------------------------------------------GG---------- [824]
BA.FRG T---------------------------------------------------------------------------------------GA---------- [818]
'Zea_mays_(chloroplast)' T---------------------------------------------------------------------------------------TG---------- [799]
T.AMIT G---------------------------------------------------------------------------------------CC---------- [814]
[ 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800]
[ . . . . . . . . . .]
Homo_sapiens -------------------------------AA----CTTCTTAGAGGGACAAG---TGG--CG-TT-CAGCCA---CCCGAGATTGA-GCAATAACAGG [1046]
Rattus_norvegicus -------------------------------AA----CTTCTTAGAGGGACAAG---TGG--CG-TT-CAGCCA---CC-GAGATTGA-GCAATAACAGG [1045]
Xenopus_laevis --------------------------------A----CTTCTTAGAGGGACAAG---TGG--CG-TT-CAGCCA--CAC-GAGATCGA-GCAATAACAGG [1038]
A._salina -------------------------------------CTTCTTAGAGGGACAAG---TGG--CG-TC-TAGCCA--TAT-GAGAGTGA-GCAATAACAGG [1036]
S._cerevisiae --------------------------------A----CTTCTTAGAGGGACTAT---CGG--TT-TC-AAGCCG-ATGG-AAGTTTGAGGCAATAACAGG [1030]
P.MICA --------------------------------A----ACTTTTAGAGGGACTTT---GCG--TG-TC-TAACGC-AAGG-AAGTTTGAGGCAATAACAGG [1030]
D.DISC TGTGTAGTCTGACTCGATAGGTACGAATTAAAA----CTTCTTAGAGGGACTAC---CTG--CC-TC-AAGCAG-GCGG-AAGTCCGAGGCAATAACAGG [1115]
T.BRUC --------------------------------GGCCCCTTCTCTGCGGGATTCC---TTGCTTT-TC-GCGCAA-GGTG-AGATTTTGGGCAACAGCAGG [1407]
E.GRAC --------------------------------G----CTTCTCTGAGGTGCTGTGTCCGC--CA-CA-AAGGGC-ATGC-ATGCTAGAGCCAACAGCAGG [1420]
Zea_mays --------------------------------G----CTTCTTAGAGGGACTAT---GGC--CG-TT-TAGGCC-G-CG-AAGTTTGAGGCAATAACAGG [1033]
D._mobilis -------------------------------------CACACTAGGGGGACTGC---CGC--CG-TTTAAGGCG-GAGG-AAGGAGGGGGCCACGGCAGG [835]
S._solfataricus --------------------------------C----CACACTAGGGGGACTGC---CGG--CG-T--AAGCCG-GAGG-AAGGAGGGGGCCACGGCAGG [833]
T._tenax --------------------------------G----CACACTAGGGGGACTGC---CGG--CG-T--AAGCCG-GAGG-AAGGAGGGGGCGACGGCAGG [836]
M._vannielii --------------------------------G----CACTCATAGGGGACCGC---TAG--CGCT--AAGCTA-GAGG-AAGGAGCGGGCAACGATAGG [836]
MB._formicicum --------------------------------G----CACACTAAGGGGACCGC---CAG--TGAT--AAACTG-GAGG-AAGGAGTGGACGACGGTAGG [839]
MS._hungatei --------------------------------G----GACACTGCTCGGACCGC---CTC--TGCT--AAAGGG-GAGG-AAGGAATGGGCAACGGTAGG [812]
H._volacanii --------------------------------G----TACATTAGAAGGACTGC---CGC--TG-CT-AAAGCG-GAGG-AAGGAACGGGCAACGGTAGG [844]
HC._morrhuae --------------------------------G----TACATTAGGGAGACTGC---CGT--CG-CT-AAGACG-GAGG-AAGGAACGGGCAACGGTAGG [845]
H.HALO --------------------------------G----TACATTAGGTGGACTGC---CGC--TG-CC-AAAGCG-GAGG-AAGGAACGGGCAACGGTAGG [844]
H._cutirubrum --------------------------------G----TACATTAGGTGGACTGC---CGC--TG-CC-AAAGCG-GAGG-AAGGAACGGGCAACGGTAGG [845]
AN._nidulans --------------------------------G----CACTCTAGAGAAACTGC---CGG--TGAC--AAACCG-GAGG-AAGGTGTGGACGACGTCAAG [857]
HE.CHL --------------------------------G----GACTCTAGGGAGACTGC---CCG--GGAC--GACCGG-GAGG-AAGGCGGGGATGACGTCAAA [844]
Bc._subtilis --------------------------------G----CACTCTAAGGTGACTGC---CGG--TGAC--AAACCG-GAGG-AAGGTGGGGATGACGTCAAA [880]
MY.CAP --------------------------------G----AACTCTAACGAGACTGC---TAG--TG-T--AAGCTA-GAGG-AAGGTGGGGATGACGTCAAA [863]
E._coli --------------------------------G----AACTCAAAGGAGACTGC---CAG--TGAT--AAACTG-GAGG-AAGGTGGGGATGACGTCAAG [878]
MYX.XA --------------------------------A----T-CTCTAGAGGGACTGC---CGG--TGTT--AAACCG-GAGG-AAGGTGGGGATGACGTCAAG [875]
P.TEST --------------------------------G----CACTCTAATGGGACTGC---CGG--TGAC--AAACCG-GAGG-AAGGTGGGGATGACGTCAAG [878]
AG.TUM --------------------------------G----CACTCTAAGGGGACTGC---CGG--TGAT--AAGCCGAGAGG-AAGGTGGGGATGACGTCAAG [858]
DV.DES --------------------------------G----CACTCTATTCAGACTGC---CCG--GGTT--AACCGG-GAGG-AAGGTGGGGACGACGTCAAG [879]
BA.FRG --------------------------------G----GACTCTAGAGAGACTGC---CGT--CGTA--AGATGT-GAGG-AAGGTGGGGATGACGTCAAA [873]
'Zea_mays_(chloroplast)' --------------------------------G----AACCCTGAACAGACCGC---CGG--TGTT--AAGCCG-GAGG-AAGGAGAGGATGAGGCCAAG [854]
T.AMIT --------------------------------G----CACTCACGAGGGACTGC---CAG--TGAG--ATACTG-GAGG-AAGGTGGGGATGACGTCAAG [869]
[ 1810 1820 1830 1840 1850 1860 1870 1880 1890 1900]
[ . . . . . . . . . .]
Homo_sapiens TCTGTGATGCCCTTAGA-TGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTG-TGCCTA------------------------CCCTACGCC [1120]
Rattus_norvegicus TCTGTGATGCCCTTAGA-TGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTG-TGCCTA------------------------CCCTACGCC [1119]
Xenopus_laevis TCTGTGATGCCCTTAGA-TGTCCGGGGCTGCACGCGCGCTACACTGAACGGATCAGCGTG-TGTCTA------------------------CCCTGCGCC [1112]
A._salina TCTGTGATGCCCTTAGA-TGTCCTGGGCCGCACGCGCGCTACACTGGAAGAATCAGCGCG-T--CC-------------------------TCCCTGTCC [1107]
S._cerevisiae TCTGTGATGCCCTTAGAACGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAG-T--CTA------------------------ACCTTGGCC [1103]
P.MICA TCTGTGATGCCCTTAGA-TGTTCTGGGCTGCACGCGCGCTACACTGATGCGTTCAACGAG-T--TTA----------------------TGCACTTGCCC [1104]
D.DISC TCTGTGATGCCCTTAGA-TACCTTGGGCCGCACGCGCGCTACAATGTAGGAAACAAAAAG-G--CT--------------------------CCTGGTCC [1185]
T.BRUC TCTGTGATGCTCCTCAA-TGTTCTGGGCGACACGCGCACTACAATGTCAGTGAGAACAAG-AGTCCGAGCGGCACTTCACAATGTCGCTCCCGCTTGATC [1505]
E.GRAC TCTGTGATGCTCCCAGA-TGTCCTGGGCCGCACGCGCACTACATTGTCACAGTGAAGGTG-T--CGA-------CATGCCCACTCCGGTGGGCCCTGGCC [1509]
Zea_mays TCTGTGATGCCCTTAGA-TGTTCTGGGCCGCACGCGCGCTACACTGATGTATCCAACGAG-TATATA------------------------GCCTTGGCC [1107]
D._mobilis TCAGC-ATGCCCCGAAC--CCCCCGGGCTACACGCGGGCTACAATGGCGGGGACAGCGGGAT--CCG------------------------ACC----CC [902]
S._solfataricus TCAGC-ATGCCCCGAAA--CTCCCGGGCCGCACGCGGGTTACAATGGCAGGGACAACGGGAT--GCT------------------------ACC----TC [900]
T._tenax TCAGT-ATGCCCCGAAA--CCCCGGGGCTGCACGCGAGCTGCAATGGCGGGGACAGCGGGAT--CCG------------------------ACC----CC [903]
M._vannielii TCCGC-ATGCCCCGAAT--CTCCTGGGCTACACGCGGGCTACAATGGCTAGGACAATGGGCT--GCT------------------------ACC----CT [903]
MB._formicicum TCCGT-ATGCCCCGAAT--CCCCTGGGCTACACGCGGGCTACAATGGTTAGGACAATGGGTT--CCG------------------------ACA----CT [906]
MS._hungatei TCAGC-ATGCCCCGAAT--TATCCGGGCTACACGCGGGCTACAATGGACAGGACAATGGGTT--TCG------------------------ACA----CC [879]
H._volacanii TCAGT-ATGCCCCGAAT--GAGCTGGGCTACACGCGGGCTACAATGGTCGAGACAATGGGTT--GCT------------------------ATC----TC [911]
HC._morrhuae TCAGT-ATGCCCCGAAT--GTGCCGGGCGACACGCGGGCTACAATGGCCGAGACAGTGGGAC--GCT------------------------ACC----CC [912]
H.HALO TCAGT-ATGCCCCGAAT--GGGCTGGGCAACACGCGGGCTACAATGGTCGAGACAATGGGAA--GCC------------------------ACT----CC [911]
H._cutirubrum TCAGT-ATGCCCCGAAT--GGGCTGGGCAACACGCGGGCTACAATGGTCGAGACAATGGGAA--GCC------------------------ACT----CC [912]
AN._nidulans TCATC-ATGCCCCTTAC--ATCCTGGGCTACACACGTACTACAATGCTCCGGACAGCGAGAC--GCG------------------------AAG----CC [924]
HE.CHL TCATC-ATGCCCCTTAT--GTCTTGGGCTACACACGTGCTACAATGGGCGGTACAAACCGAA--GCG------------------------AAG----CC [911]
Bc._subtilis TCATC-ATGCCCCTTAT--GACCTGGGCTACACACGTGCTACAATGGACAGAACAAAGGGCA--GCG------------------------AAA----CC [947]
MY.CAP TCATC-ATGCCCCTTAT--GTCCTGGGCTACACACGTGCTACAATGGCTGGTACAAAGAGTT--GCA------------------------ATC----CT [930]
E._coli TCATC-ATGGCCCTTAC--GACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAA--GCG------------------------ACC----TC [945]
MYX.XA TCCTC-ATGGCCTTTAT--GACCAGGGCTACACACGTGCTACAATGGCCGGTACAGAGCGTT--GCC------------------------AAC----CC [942]
P.TEST TCCTC-ATGGCCCTTAT--AGGTGGGGCTACACACGTCATACAATGGCTGGTACAAAGGGTT--GCC------------------------AAC----CC [945]
AG.TUM TCCTC-ATGGCCCTTAC--GGGCTGGGCTACACACGTGCTACAATGGTGGTGACAGTGGGCA--GCG------------------------AGA----CA [925]
DV.DES TCATC-ATGGCCCTTAC--GCCTAGGGCTACACACGTACTACAATGGCGCGCACAAAGGGGA--GCG------------------------AGA----CC [946]
BA.FRG TCAGC-ACGGCCCTTAC--GTCCGGGGCTACACACGTGTTACAATGGGGGGTACAGAAGGCA--GCT------------------------AGC----GG [940]
'Zea_mays_(chloroplast)' TCATC-ATGCCCCTTAT--GCCCTGGGCGACACACGTGCTACAATGGGCGGGACAAAGGGTC--GCG------------------------ATC----TC [921]
T.AMIT TCCGC-ATGGCCCTTAT--GGGCTGGGCCACACACGTGCTACAATGGCAATGACAATGGGAA--GCA------------------------AGG----CT [936]
[ 1910 1920 1930 1940 1950 1960 1970 1980 1990 2000]
[ . . . . . . . . . .]
Homo_sapiens -GGCAGGCGCGGG-TAACCCGTTGAA-CCCCATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCAT-GAACGAGGAATTCCCAGTAAGTGCGGGTCA [1216]
Rattus_norvegicus -GGCAGGCGCGGG-TAACCCGTTGAA-CCCCATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCAT-GAACGAGGAATTCCCAGTAAGTGCGGGTCA [1215]
Xenopus_laevis -GACAGGTGCGGG-TAACCCGCTGAA-CCCCGTTCGTGATAGGGATCGGGGATTGCAATTATTTCCCAT-GAACGAGGAATTCCCAGTAAGTGCGGGTCA [1208]
A._salina -GAGAGGACCGGG-TAACC-GCTGAA-CCTCTTCCGTGGTTGGGATTGGGGACTGCAAGGATC-CCCAT-GAACCAGGAATCCCTAGTAGGCGCAAGTCA [1201]
S._cerevisiae -GAGAGGTCTTGG-TAATCTTGTGAA-ACTCCGTCGTGCTGGGGATAGAGCATTGTAATTATTGCTCTT-CAACGAGGAATTCCTAGTAAGCGCAAGTCA [1199]
P.MICA -GATAGGGTTTGGGTAATCTTTTTAA-ATCGCATCGTGATGGGGATAGATTATTGCAATTATTAATCTT-CAACGAGGAATTCCTAGTAAGCGCGAGTCA [1201]
D.DISC -GGAAGGATTGGG-TAATCATTTGAA-TTTCCTACGTAACTGGGCTTGATCTTTGTAATTATTGATCAT-AAACGAGGAATTCCTTGTAAGCGTAAGTCA [1281]
T.BRUC -AAAAGAGCGGGG-AAACCACGGAATCACGTAGACCCACTTGGGACCGAGTATTGCAATTATTGGTCGCGCAACGAGGAATGTCTCGTAGGCGCAGCTCA [1603]
E.GRAC TGAAGAGGCTGGG-AAATCCTGCAAG-CCTGTGACGTACTGGGGATAGATGGTTGCAACTGTCTGCCTT-GAACGTGGAATGCCTAGTATGCCTGGGTCA [1606]
Zea_mays -GACAGGC-CGGT-AATCTTGGGAAA-TTTCATGCGTGATGGGGATAGATCATTGCAATTGTTGGTCTT-CAACGAGGAATGCCTAGTAAGCGCGAGTCA [1202]
D._mobilis -GAAAGGGGAGGC-GAATCCCTC-AA-ACCCCGCCGTGGTTGGGATCGAGGGCTGCAACTCGCCCTCGT-GAACGAGGAATCCCTAGTAACCGCGCGTCA [997]
S._solfataricus -GAAAGGGGGAGC-CAATCCTT--AA-ACCCTGCCGCAGTTGGGATCGAGGGCTGAAACCCGCCCTCGT-GAACGAGGAATCCCTAGTAACCGCGGGTCA [994]
T._tenax -GAAAGGGGGAGG-CAATCCCGT-AA-ACCCCGCCCCAGTAGGGATCGAGGGCTGCAACTCGCCCTCGT-GAACGTGGAATCCCTAGTAACCGCGTGTCA [998]
M._vannielii -GAAAAGGGACGC-GAATCTCCG-AA-ACCTAGTCGTAGTTCGGATCGTGGGCTGTAACTCGCCCACGT-GAAGCTGGAATCCGTAGTAATCGCAGTTCA [998]
MB._formicicum -GAAAGGTGGAGG-TAATCTCCT-AA-ACCTGGCCTTAGTTCGGATTGAGGGCTGTAACTCGCCCTCAT-GAAGCTGGAATGCGTAGTAATCGCGTGTCA [1001]
MS._hungatei -GAGAGGTGAGGA-TAATCTCCT-AA-ACCTGTCCGAAGTTCGGATTGCGGGTTGTAACTCACCCGCAT-GAAGCTGGAATCCGTAGTAATCGCGTTTCA [974]
H._volacanii -GAAAGAGAACGC-TAATCTCCT-AA-ACTCGATCGTAGTTCGGATTGAGGGCTGAAACTCGCCCTCAT-GAAGCTGGATTCGGTAGTAATCGCATTTCA [1006]
HC._morrhuae -GAGAGGGGACGC-TAATCTCCT-AA-CCTCGGTCGTAGTTCGGATTGCGGGTTGAAACCCACCCGCAT-GAAGCTGGATTCGGTAGTAATCGCATTTCA [1007]
H.HALO -GAGAGGAGGCGC-TAATCTCCT-AA-ACTCGATCGTAGTTCGGATTGAGGGCTGAAACTCGCCCTCAT-GAAGCTGGATTCGGTAGTAATCGCGTGTCA [1006]
H._cutirubrum -GAGAGGAGGCGC-TAATCTCCT-AA-ACTCGATCGTAGTTCGGATTGAGGGCTGAAACTCGCCCTCAT-GAAGCTGGATTCGGTAGTAATCGCGTGTCA [1007]
AN._nidulans -GCGAGGTGAAGC-AAATCTCCC-AA-ACCGGGGCTCAGTTCAGATTGCAGGCTGCAACTCGCCTGCAT-GAAGGCGGAATCGCTAGTAATCGCAGGTCA [1019]
HE.CHL -GAGAGGTGGAGC-GAACCGGAG-AA-AGCCGTTCCCAGTTCGGATTGCTCTCTGCAACTCGAGAGCAT-GAAGGCGGAATCGCTAGTAATCGCGGGTCA [1006]
Bc._subtilis -GCGAGGTTAAGC-CAATCCCAC-AA-ATCTGTTCTCAGTTCGGATCGCAGTCTGCAACTCGACTGCGT-GAAGCTGGAATCGCTAGTAATCGCGGATCA [1042]
MY.CAP -GTGAAGGGGAGC-TAATCTCAA-AA-AACCAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCAT-GAAGCCGGAATCACTAGTAATCGCGAATCA [1025]
E._coli -GCGAGAGCAAGC-GGACCTCAT-AA-AGTGCGTCGTAGTCCGGATTGGAGTCTGCAACTCGACTCCAT-GAAGTCGGAATCGCTAGTAATCGTGGATCA [1040]
MYX.XA -GCGAGGGGGAGC-TAATCGCAT-AA-AACCGGTCTCAGTTCAGATTGGAGTCTGCAACTCGACTCCAT-GAAGGAGGAATCGCTAGTAATCGCAGATCA [1037]
P.TEST -GCGAGGGGGAGC-TAATCCCAT-AA-AGCCAGTCGTAGTCCGGATCGCAGTCTGCAACTCGACTGCGT-GAAGTCGGAATCGCTAGTAATCGTGGATCA [1040]
AG.TUM -GCGATGTCGAGC-TAATCTCCA-AA-AGCCAT-CTCAGTTCGGATTGCACTCTGCAACTCGAGTGCAT-GAAGTTGGAATCGCTAGTAATCGCAGATCA [1019]
DV.DES -GCGAGGTGGAGC-CAATCCCAA-AA-AACGCGTCCCAGTCCGGATTGCAGTCTGCAACTCGACTGCAT-GAAGTTGGAATCGCTAGTAATTCGAGATCA [1041]
BA.FRG -GTGACCGTATGC-TAATCCCA--AA-ATCCTCTCTCAGTTCGGATCGAAGTCTGCAACCCGACTTCGT-GAAGCTGGATTCGCTAGTAATCGCGCATCA [1034]
'Zea_mays_(chloroplast)' -GCGAGGGTGAGC-TAACTCCAA-AA-ACCCGTCCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCAT-GAAGCAGGAATCGCTAGTAATCGCCGGTCA [1016]
T.AMIT -GTAAGGCGGAGC-GAATC-CGG-AA-AGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACAT-GAAGTTGAAATCGCTAGTAATCGCGGATCA [1030]
[ 2010 2020 2030 2040 2050 2060 2070 2080 2090 2100]
[ . . . . . . . . . .]
Homo_sapiens TA-AGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGCTTGACTATCTAGAGGAAGTAAAAGTCG [1315]
Rattus_norvegicus TA-AGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGCTTGACTATCTAGAGGAAGTAAAAGTCG [1314]
Xenopus_laevis TA-AGCTCGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGCTTGACTATCTAGAGGAAGTAAAAGTCG [1307]
A._salina TT-AGCTTGCGTCGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGATTTAGCTTGATCCTTTAGAGGAAGTAAAAGTCG [1300]
S._cerevisiae TC-AGCTTGCGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTAGTACCGATTGAATGGCTTAGCTTGGTCATTTGGAGGAACTAAAAGTCG [1298]
P.MICA TC-AGCTCGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAGTG-----ACCTTATCACTTAGAGGAAGGAGAAGTCG [1295]
D.DISC TT-ACCTTATGCTGAATATGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATCGAATGATACGGTCTCATTGTTTAGAGGAAGGAGAAGTCG [1380]
T.BRUC TC-AAACTGTGCCGATTACGTCCCTGCCATTTGTACACACCGCCCGTCGTTGTTTCCGAT--GATGGTGCAAATTGCTTCAATAGAGGAAGCAAAAGTCG [1700]
E.GRAC TC-AGCCCAGACCGATTGTGTCCCTGCCATTTGTACACACCGCCCGTCGTTGCTACCGATGG--TGGCTGGAGTCCAGCCACTAGAGGAAGCAAAAGTCG [1703]
Zea_mays TC-AGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGCCTTATCATTTAGAGGAAGGAGAAGTCG [1301]
D._mobilis AC-ATCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCGCTCCACCCGAGGGGAGG-GGGAGCTCCCCCTCCCTGAGGGGGGAGAAGTCG [1095]
S._solfataricus AC-AACCCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCGCTCCACCCGAGCGCGAA-AGGGGCTCCTTTCCCGCGAGGGGGGAGAAGTCG [1092]
T._tenax CC-AACGCGCGGTGAATACGTCCCTGCCCCTTGCACACACCGCCCGTCGCACCACCCGAGGGAGTT-CTCTGCAGAGAACTCCCGAGGGGGGTGAAGTCG [1096]
M._vannielii TA-ATACTGCGGTGAATGTGTCCCTGCTCCTTGCACACACCGCCCGTCACACCACCCGAGTTGGGT-TCAGGCCTGGGCTCAGCGAGGGGGGTGAAGTCG [1096]
MB._formicicum TA-ACCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCACGCCACCCAAAAAGGGT-TTGGATCTAGGTTCTTTGAGGAGGGCGAAGTCG [1099]
MS._hungatei AC-ATAGCGCGGTGAATATGTCCCTGCTCCTTGCACACACCGCCCGTCAAACCACCCGAGTGAGGT-CTTGATCTGGGTTTTGCAAGGGGGGTTAAGTCG [1072]
H._volacanii AT-AGAGTGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCAAAGCACCCGAGTGAGGT-CCGGA-------TTCGCAAGGGGGCTTAAGTCG [1097]
HC._morrhuae GA-AGAGTGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCAAATCACCCGAGTGAGGT-CCGGA-------TTCGCAAGGGGGATTAAGTCG [1098]
H.HALO GC-AGCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCAAATCACCCGAGTGGGGT-TCGGA-------TCCGCAAGGGGGATTAAGTCG [1097]
H._cutirubrum GC-AGCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCAAATCACCCGAGTGGGGT-TCGGA-------TCCGCAAGGGGGATTAAGTCG [1098]
AN._nidulans GC-ATACTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGAAGTTGGCC-ATGCCGGTAGGGCTGATGACTGGGGTGAAGTCG [1117]
HE.CHL GC-ATACCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAAAGTCGGCA-ACACCGGTGGGGTCGATGATTGGGGTGAAGTCG [1104]
Bc._subtilis GC-ATGCCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAGAGTTTGTA-ACACCGGTGGGACAGATGATTGGGGTGAAGTCG [1140]
MY.CAP GCTATGTCGCGGTGAATACGTTCTCGGGTCTTGTACACACCGCCCGTCACACCATGAGAGTTGGTA-ATACCGGTAGGACTAGCGATTGGGGTGAAGTCG [1124]
E._coli GA-ATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTT-GCAAATTTGTGATTCATGACTGGGGTGAAGTCG [1138]
MYX.XA GC-ACGCTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTCGATT-GCTCCGGAGTGGTCGGTAACTGGGGTGAAGTCG [1135]
P.TEST GA-ATGTCACGGTGAATACGTTCCCGGGTCTTGTACACACCGCCCGTCACACCATGGGAGCGGGTC-TCGCCGGCGGGGTTCGTGACTGGGGTGAAGTCG [1138]
AG.TUM GC-ATGCTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTTGGTT-TTACCGGTAGGGTCAGCGACTGGGGTGAAGTCG [1117]
DV.DES GC-ATGCTCGGGTGAATGCGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAAAGTCGGTT-TTACCGGTAGGGCCGATGATTGGGGTGAAGTCG [1139]
BA.FRG GCCACGGCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCAAGCCATGGGAGCCGGGG-GTACCGGTAAAACTGGTGACTGGGGCTAAGTCG [1133]
'Zea_mays_(chloroplast)' GCCATACGGCGGCGAATCCGTTCCCGGGCCTTGTACACACCGCCCGTCACACTATAGGAGCTGGCC-AGGTTGGCTAGGCTTGCGACTGGAGTGAAGTCG [1115]
T.AMIT GC-ATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATTGGTT-TCGCCGGTGGGGTCTTCGACTGGGGTGAAGTCG [1128]
[ 2110 2120 2130 2140 ]
[ . . . . ]
Homo_sapiens TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA------- [1355]
Rattus_norvegicus TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA------- [1354]
Xenopus_laevis TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA------- [1347]
A._salina TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA------- [1340]
S._cerevisiae TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA------- [1338]
P.MICA TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTC------- [1335]
D.DISC TAACAAGGTATCCGTAGGTGAACCTGCGGATGGATCATTTT------ [1421]
T.BRUC TAACAAGGTAGCTGTAGGTGAACCTGCAGCTGGATCATTT------- [1740]
E.GRAC TAACAAGGTTGCTGTAGGTGAACCTGCAGCAGGATCATTG------- [1743]
Zea_mays TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTG------- [1341]
D._mobilis TAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGATCACCTCCT---- [1138]
S._solfataricus TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCA----- [1134]
T._tenax TAACAAGGTAGCCGTAGGGGAACCTGCTTCTGGATCACCTCC----- [1138]
M._vannielii TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCC----- [1138]
MB._formicicum TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCT---- [1142]
MS._hungatei TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT---- [1115]
H._volacanii TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT---- [1140]
HC._morrhuae TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT---- [1141]
H.HALO TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT---- [1140]
H._cutirubrum TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT---- [1141]
AN._nidulans TAACAAGGTAGCCGTACCGGAAGGTGTGGCTGGATCACCTCCTTT-- [1162]
HE.CHL TAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCT [1151]
Bc._subtilis TAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCT [1187]
MY.CAP TAACAAGGTATCCGTACGGGAACGTGCGGATGGATCACCTCCTTTCT [1171]
E._coli TAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTA-- [1183]
MYX.XA TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTTCT [1182]
P.TEST TAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCT [1185]
AG.TUM TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTTCT [1164]
DV.DES TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTT-- [1184]
BA.FRG TAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGAACACCTCCTTTCT [1180]
'Zea_mays_(chloroplast)' TAACAAGGTAGCCGTACTGGAAGGTGCGGCTGGATCACCTCCTTT-- [1160]
T.AMIT TAACAAGGTAGCCGTAGGGGAACCTGTGGCTGGATTGAATCC----- [1170]
;
END;
BEGIN CODONS;
CODESET * UNTITLED = Universal: all ;
END;
BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ;
END;
BEGIN TREES;
TRANSLATE
1 Homo_sapiens,
2 Rattus_norvegicus,
3 Xenopus_laevis,
4 A._salina,
5 S._cerevisiae,
6 P.MICA,
7 D.DISC,
8 T.BRUC,
9 E.GRAC,
10 Zea_mays,
11 D._mobilis,
12 S._solfataricus,
13 T._tenax,
14 M._vannielii,
15 MB._formicicum,
16 MS._hungatei,
17 H._volacanii,
18 HC._morrhuae,
19 H.HALO,
20 H._cutirubrum,
21 AN._nidulans,
22 HE.CHL,
23 Bc._subtilis,
24 MY.CAP,
25 E._coli,
26 MYX.XA,
27 P.TEST,
28 AG.TUM,
29 DV.DES,
30 BA.FRG,
31 'Zea_mays_(chloroplast)',
32 T.AMIT
;
TREE mp_tree_1 = [&R] ((14,(15,(16,(18,(17,(19,20)))))),((13,(11,12)),(((8,9),(7,(5,(6,(10,(4,(3,(1,2)))))))),(30,(((21,31),(24,(22,23))),((25,27),(26,(29,(28,32)))))))));
TREE mp_tree_2 = [&R] ((14,(15,(16,(18,(17,(19,20)))))),((13,(11,12)),(((8,9),(7,(5,(6,(10,(4,(3,(1,2)))))))),(30,(((21,31),(24,(22,23))),((26,(25,27)),(29,(28,32))))))));
TREE * UNTITLED = [&R] ((14,(15,(16,(18,(17,(19,20)))))),((13,(11,12)),(((8,9),(7,(5,(6,(10,(4,(3,(1,2)))))))),(30,(((21,31),(24,(22,23))),((25,27),(26,(29,(28,32)))))))));
END;
BEGIN MACCLADE;
Version 3.05;
LastModified -1425155107;
Singles 1000&/0;
END;