BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NP_006065
(442 letters)
Database: Homo_sapiens.NCBI36.apr.pep.fa
48,851 sequences; 23,910,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ENSP00000350182 pep:novel clone::BX322644.8:4905:15090:-1 gene:E... 120 3e-27
ENSP00000350182 pep:novel clone::BX322644.8:4905:15090:-1 gene:E... 120 3e-27
ENSP00000327738 pep:known-ccds chromosome:NCBI36:4:189297592:189... 115 8e-26
>ENSP00000350182 pep:novel clone::BX322644.8:4905:15090:-1 gene:ENSG00000137397
transcript:ENST00000357569
Length = 425
Score = 120 bits (301), Expect = 3e-27
Identities = 76/261 (29%), Positives = 140/261 (53%), Gaps = 21/261 (8%)
Query: 9 IEKEVTCPICLELLTEPLSLDCGHSFCQACITAKIKESVIISRGESSCPVCQTRFQPGNL 68
+++EV CPICL++L +P+++DCGH+FC CIT +I E+ S G CP+C+T + +
Sbjct: 10 LQEEVICPICLDILQKPVTIDCGHNFCLKCIT-QIGET---SCGFFKCPLCKTSVRKNAI 65
Query: 69 RPNRHLANIVERVKEVKMSP-QEGQKRDVCEHHGKKLQIFCKEDGKVICWVCELSQEHQG 127
R N L N+VE+++ ++ S Q +K C H + FC++DGK +C+VC S++H+
Sbjct: 66 RFNSLLRNLVEKIQALQASEVQSKRKEATCPRHQEMFHYFCEDDGKFLCFVCCESKDHKS 125
Query: 128 HQTFRINEVVKECQEKLQVALQRLIKEDQEAEKLED------DIRQERTAWKIERQKILK 181
H I E + Q ++Q +Q L ++++E +++ D+ ++ + E+Q+IL
Sbjct: 126 HNVSLIEEAAQNYQGQIQEQIQVLQQKEKETVQVKAQGVHRVDVFTDQV--EHEKQRILT 183
Query: 182 GFNEMRVILDNEEQRELQKL----EEGEVNVLDNLAAATDQLVQQRQDASTLISDLQRRL 237
F + +L+ E+ L ++ EG +A+ QL D L+ L+ +
Sbjct: 184 EFELLHQVLEEEKNFLLSRIYWLGHEGTEAGKHYVASTEPQL----NDLKKLVDSLKTKQ 239
Query: 238 TGSSVEMLQDVIDVMKRSESW 258
++L+ + RSE +
Sbjct: 240 NMPPRQLLEVTQPHLPRSEEF 260
>ENSP00000327738 pep:known-ccds chromosome:NCBI36:4:189297592:189305643:1
gene:ENSG00000184108 transcript:ENST00000332517
CCDS3851.1
Length = 468
Score = 115 bits (289), Expect = 8e-26
Identities = 101/410 (24%), Positives = 180/410 (43%), Gaps = 39/410 (9%)
Query: 8 DIEKEVTCPICLELLTEPLSLDCGHSFCQACITAKIKESVIISRGESSCPVCQTRFQPGN 67
++ +E+TC ICL+ + P++ +CGHSFC C+ +E SCP C + +
Sbjct: 9 NLREELTCFICLDYFSSPVTTECGHSFCLVCLLRSWEE----HNTPLSCPECWRTLEGPH 64
Query: 68 LRPNRHLANIVERVKEVKMSPQEGQKRDVCEHHGK-----KLQIFCKEDGKVICWVCELS 122
+ N L + ++++ Q Q D +G+ K ++ G ++
Sbjct: 65 FQSNERLGRLASIARQLR--SQVLQSEDEQGSYGRMPTTAKALSDDEQGGSAF-----VA 117
Query: 123 QEHQGHQTFRINEVVKECQEKLQVALQRLIKEDQEA------EKLEDDIRQERTAWKIER 176
Q H ++ +E + +EKLQ L L +EA EK + QE T K +
Sbjct: 118 QSHGANRVHLSSEAEEHHREKLQEILNLLRVRRKEAQAVLTHEKERVKLCQEET--KTCK 175
Query: 177 QKILKGFNEMRVILDNEEQRELQKLEEGEVNVLDNLAAATDQLVQQRQDASTLISDLQRR 236
Q ++ + +M L EEQ +LQ LE+ E + L +L QQ + S +I+ ++
Sbjct: 176 QVVVSEYMKMHQFLKEEEQLQLQLLEQEEKENMRKLRNNEIKLTQQIRSLSKMIAQIESS 235
Query: 237 LTGSSVEMLQDVIDVMKRSESWTXXXXXXXXXXXXXXFRVPDLSGMLQVLKELTDVQYYW 296
S+ E L++V ++RSE + ++GM ++L++ +
Sbjct: 236 SQSSAFESLEEVRGALERSE----PLLLQCPEATTTELSLCRITGMKEMLRKFS------ 285
Query: 297 VDVMLNPGSATSNVAISVDQRQVKTVRTCTFKNSNPCDF-SAFGVFGCQYFSSGKYYWEV 355
++ L+P +A + + +S D + VK + NP F + V G Q F+SG++YWEV
Sbjct: 286 TEITLDPATANAYLVLSEDLKSVKYGGSRQQLPDNPERFDQSATVLGTQIFTSGRHYWEV 345
Query: 356 DVSGKIAWILGVHSKISSLNKRKSSGFAFDPSVNYSKVYSRYRPQYGYWV 405
+V K W +G+ S + P +S + + Y WV
Sbjct: 346 EVGNKTEWEVGICKDSVS----RKGNLPKPPGDLFSLIGLKIGDDYSLWV 391
Database: Homo_sapiens.NCBI36.apr.pep.fa
Posted date: Jun 15, 2006 8:56 PM
Number of letters in database: 23,910,368
Number of sequences in database: 48,851
Lambda K H
0.319 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,900,506
Number of Sequences: 48851
Number of extensions: 899179
Number of successful extensions: 6075
Number of sequences better than 1.0e-25: 105
Number of HSP's better than 0.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 5632
Number of HSP's gapped (non-prelim): 157
length of query: 442
length of database: 23,910,368
effective HSP length: 107
effective length of query: 335
effective length of database: 18,683,311
effective search space: 6258909185
effective search space used: 6258909185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 289 (115.9 bits)