LOCUS       AF222649rc              1659 bp    RNA     linear   VRL 10-JAN-2001
DEFINITION  Influenza A virus (A/Quail/Hong Kong/NT28/99(H9N2)) segment 3 PA
            (PA) gene, partial cds.
ACCESSION   AF222649rc
VERSION     AF222649rc.1  
KEYWORDS    .
SOURCE      Influenza A virus (A/Quail/Hong Kong/NT28/99(H9N2))
  ORGANISM  Influenza A virus (A/Quail/Hong Kong/NT28/99(H9N2))
            Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
            Influenzavirus A.
REFERENCE   1  (bases 1 to 1659)
  AUTHORS   Guan,Y., Shortridge,K.F., Krauss,S., Chin,P.S., Dyrting,K.C.,
            Ellis,T.M., Webster,R.G. and Peiris,M.
  TITLE     H9N2 influenza viruses possessing H5N1-like internal genomes
            continue to circulate in poultry in southeastern China
  JOURNAL   J. Virol. 74 (20), 9372-9380 (2000)
   PUBMED   11000205
REFERENCE   2  (bases 1 to 1659)
  AUTHORS   Guan,Y., Krauss,S., Webster,R.G. and Shortridge,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2000) Virology and Molecular Biology, St. Jude
            Children's Research Hospital, 332 N. Lauderdale, Memphis, TN 38105,
            USA
FEATURES             Location/Qualifiers
     source          complement(1..1659)
                     /organism="Influenza A virus (A/Quail/Hong
                     Kong/NT28/99(H9N2))"
                     /mol_type="genomic RNA"
                     /strain="A/Quail/Hong Kong/NT28/99(H9N2)"
                     /db_xref="taxon:109241"
                     /segment="3"
     gene            complement(1..1653)
                     /gene="PA"
     CDS             complement(1..1653)
                     /gene="PA"
                     /codon_start=1
                     /product="PA"
                     /protein_id="AAG48207.1"
                     /db_xref="GI:12060686"
                     /translation="MEDFVRQCFSPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEV
                     CFMYSDFHFIDERGESIIVEFGDPNVLLKHRFEIIEGRDRTMAWTVVNSICNTTGVEK
                     PKYLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSERTHIHIFSFTGEEMATKAD
                     YTLDEESRARIKTRLFTIRQELASRGLWDSFRQSERGEETIEERFEITGTMRRLADQS
                     LPPNFSSLENFRAYVDGFEPNGCIEGKLSQMSKEVTARIEPFLKTTPRPLKLPDGPPC
                     SQRSKFLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIIKPHEKGINPNY
                     LLAWKQVLAELQDIENDEKIPKTKNMKKTSQLKWALGENMAPEKVDFEDCKDVGDLKQ
                     YDSDEPELKSLASWIQSEFNKACELTDSSWVELDEIGEDVAPIEHIASMRRNYFTAEV
                     SHCRATEYIMKGVYINTALLNASCAAMDDFQLIPMVSKCRTKEGRRKTNLYGFIIKGR
                     SHLRNDTDVVNFVSMEFSLTDPRLEPHKWEKYCVLEVGDMLLR"
     misc_feature    complement(4..1593)
                     /gene="PA"
                     /note="Influenza RNA-dependent RNA polymerase subunit PA;
                     Region: Flu_PA; pfam00603"
                     /db_xref="CDD:144261"
     gene            complement(join(1081..1653,894..1079))
                     /gene="PA-X"
     CDS             complement(join(1081..1653,894..1079))
                     /gene="PA-X"
                     /product="PA-X"
                     /codon_start=1
BASE COUNT      374 a    412 c    312 g    561 t
ORIGIN
        1 tctcaggagc atgtccccta cttcaagaac acagtacttc tcccacttgt gtggctccaa
       61 tctcgggtct gtaagagaaa attccatgct cacaaagttt accacatcag tatcattcct
      121 caaatgggac cttcccttga taatgaaccc atacaggttt gttttccgtc tcccttcttt
      181 tgttctgcat ttgcttacca ttgggatcaa ttggaagtca tccatggctg cacaagatgc
      241 attgagcaac gctgtattga tatacactcc cttcattata tactcagtag cccggcaatg
      301 tgacacttct gctgtgaagt aattccttct catactcgca atgtgctcga ttggggcaac
      361 atcttctcct atttcatcaa gttctaccca gcttgaatcg gtcagttcac atgccttgtt
      421 aaattcactc tggatccaac ttgctagcga tttgagctct ggttcatcac tatcatattg
      481 tttcaggtca ccaacgtctt tgcagtcctc aaagtccact ttctccggtg ccatattctc
      541 acctaatgcc cattttaatt ggcttgtttt cttcatgttc ttcgtttttg ggatcttttc
      601 atcattttca atgtcctgga gctctgccag cacctgcttc caagctaaga gataatttgg
      661 gtttataccc ttctcatgtg gtttgataat tttgggctct ttccagccga aaaatgtttt
      721 catgcatttg atcgcatcat acagcggtat cccctctccc tcatgactcg ggtcctcaat
      781 gcttaatttc aaagcatcca tcagtaagaa ttttgacctt tgggaacagg gaggtccatc
      841 aggcaatttt agaggacgtg gtgttgtttt aagaaagggc tcaattctgg ccgttacctc
      901 ttttgacatc tgagaaagct tgccctcaat gcagccgttc ggttcgaatc catccacata
      961 ggctctaaag ttttcaaggc tggagaaatt cggtgggaga ctttggtcgg caagcctgcg
     1021 cattgttcct gtgatttcaa atctttcttc aattgtctct tcgcctctct cggactgacg
     1081 aaaggaatcc catagacccc tgctagccag ttcctgtctt atggtgaaca gcctagtttt
     1141 gatccttgcc ctgctctctt catcaagggt atagtccgcc ttggtggcca tttcttcccc
     1201 agtaaatgaa aagatgtgaa tgtgtgttct ctcggatttt atcttgttgg ccttttctag
     1261 atagtatatg tgcacttccc tccgtgtcac tccaatctca atgaatcgat tctccttgta
     1321 atcatacaga tctggaaggt atttaggttt ttcgactccc gtagtgttac agatgctatt
     1381 cactactgtc catgccattg ttcggtctct tccttcaatt atttcaaatc ggtgtttcaa
     1441 taacacattt ggatcaccaa attccacaat tattgattcg cctctttcgt caatgaagtg
     1501 gaaatctgaa tacatgaagc agacttccag atgagtgcat attgccgcaa acttgttcgt
     1561 ttcgattttc gggtcttccc cgtactcttt cattgccttt tccgcaagct cgacgatcat
     1621 tgggctgaag cattgtcgca caaagtcttc cattttgaa
//