Command: glimmer3 -l -X AAVN02000021.1.fasta aavn.icm glimmer3-fragment
Sequence file = AAVN02000021.1.fasta
Number of sequences = 1
ICM model file = aavn.icm
Excluded regions file = none
List of orfs file = none
Input is NOT separate orfs
Independent (non-coding) scores are used
Circular genome = false
Truncated orfs = true
Minimum gene length = 100 bp
Maximum overlap bases = 30
Threshold score = 30
Use first start codon = false
Start codons = atg,gtg,ttg
Start probs = 0.600,0.300,0.100
Stop codons = taa,tag,tga
GC percentage = 53.3%
Ignore score on orfs longer than 812
>gi|123977258|gb|AAVN02000021.1| Collinsella aerofaciens ATCC 25986 C_aerofaciens-2.0_Cont1.6, whole genome shotgun sequence
Sequence length = 2932
----- Start ----- --- Length ---- ------------- Scores -------------
ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 NC
+1 -2 79 192 189 111 -5.50 0 0 - 99 - - 0 0
-1 333 270 154 177 114 -13.99 0 - 0 99 0 - 0 0
-2 340 328 221 117 105 -9.96 0 - 0 93 0 0 1 5
+2 134 263 424 288 159 -10.03 0 0 0 99 - - 0 0
-3 458 233 3 453 228 1.15 0 - - 99 - - 0 0
+1 229 277 540 309 261 -9.76 0 0 - 99 - - - 0
0001 +3 0 0 674 669 669 7.01 99 - - 99 - - - 0
-2 727 580 368 357 210 -3.05 0 - - 99 - 0 - 0
-1 786 771 658 126 111 -14.03 0 - - - 0 - - 99
-2 904 859 728 174 129 -12.38 0 1 - - - 0 - 98
-3 914 905 750 162 153 -0.96 17 0 - 9 - 0 17 72
+1 718 778 930 210 150 -3.84 0 0 - 1 - - - 98
-1 978 918 787 189 129 -12.66 0 0 - 1 0 - 80 17
+3 750 804 986 234 180 -4.06 0 - - 0 - - - 99
-1 1110 1089 979 129 108 -11.01 0 - 0 - 0 - - 99
+2 983 1016 1234 249 216 -6.83 0 - 0 96 - 0 - 3
0002 +3 1005 1071 1253 246 180 5.32 99 - - 99 - 0 - 0
-2 1339 1225 1013 324 210 -6.58 0 - 0 49 - 0 - 50
+2 1322 1388 1492 168 102 -8.80 0 99 0 - 0 - 0 0
-3 1514 1514 1302 210 210 -4.98 0 99 - - 0 - 0 0
-1 1605 1221 1111 492 108 -14.08 0 - 0 99 0 0 0 0
-2 1771 1744 1619 150 123 -16.35 0 99 - - 0 0 0 0
+2 1814 1820 1930 114 108 -7.50 0 99 0 - - - 0 0
-3 1973 1622 1515 456 105 -1.02 0 99 0 - - - 0 0
-3 2258 2090 1974 282 114 -5.13 0 99 - - 0 - 0 0
+2 2000 2081 2287 285 204 -14.54 0 99 0 - 0 0 - 0
-2 2335 2332 2018 315 312 -12.59 0 99 - - 0 0 - 0
-1 2340 2247 1891 447 354 -3.45 0 99 - - 0 - - 0
0003 +1 1177 1231 2511 1332 1278 12.08 99 99 - - - - - 0
+2 2288 2453 2560 270 105 -9.51 0 - 0 0 0 - - 99
-1 2562 2502 2341 219 159 -1.23 0 99 0 - 0 - - 0
+3 2457 2478 2594 135 114 -12.83 0 - - 0 - - - 99
-3 2831 2816 2652 177 162 -9.05 0 84 - - - - 0 15
-2 2935 2935 2813 117 117 -9.81 0 99 0 0 0 0 - 0
0004 -1 2934 2880 2755 174 123 2.72 40 25 32 - 40 - - 1
+3 2802 2805 2933 129 126 -8.60 0 99 0 0 0 - - 0
0005 +1 2656 2677 2934 276 255 5.90 99 99 - - - - - 0
+2 2699 2798 2935 234 135 -3.20 0 99 0 0 0 - - 0