# hmmscan :: search sequence(s) against a profile database
# HMMER 3.0 (March 2010); http://hmmer.org/
# Copyright (C) 2010 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: FQ377874.faa
# target HMM database: HMM_Profiles.hmm
# output directed to file: FQ377874.txt
# number of worker threads: 8
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: gi|328801650|gb|CBW53803.1| [L=243]
Description: IS1296 A transposase protein B [Mycoplasma mycoides subsp. capri LC str. 95010]
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.3e-88 289.2 12.7 3.8e-88 288.5 8.8 1.3 1 IS3_IS150_ORF2.curated
Domain annotation for each model (and alignments):
>> IS3_IS150_ORF2.curated
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 288.5 8.8 7.6e-89 3.8e-88 145 386 .. 4 236 .. 1 238 [. 0.94
Alignments for each domain:
== domain 1 score: 288.5 bits; conditional E-value: 7.6e-89
IS3_IS150_ORF2.curated 145 eiyhrhrgrYGYRRitlaLrlSEkrGkqiNhKrvqrLMkelgLkSv.iRvKk.kyrsyrgevgivadNlLqRqFkadkPnek 224
i+ ++ + YGYRR++++L G +NhK++ rL kelg R K +y sy+g+vg+ adN+L R+F + n k
gi|328801650|gb|CBW53803.1| 4 DIFSKSFETYGYRRLKITLK---SKGYIVNHKKILRLTKELGVQCIkFRTKNgRYSSYKGTVGKIADNVLKRNFHSLQAN-K 81
69999***************...*******************87642344434**********************99998.5 PP
IS3_IS150_ORF2.curated 225 W.vTDVTEFkvgggkKlYLSpIlDLFNrEIisyslserpdaklVkktLerAlkklgpdevpvlHSPRLLSDqGwqYqskay. 304
+TDVTEFkv+ g+KlYLSpI+DL+N EIisys + p+++l+ +L++Alkk+ ++ +++ HS DqG++Yq+ +
gi|328801650|gb|CBW53803.1| 82 L*CTDVTEFKVN-GQKLYLSPIIDLYNDEIISYSIQTNPNLNLTNSMLDKALKKVKNTNGLLIHS-----DQGFHYQH--Is 155
788*********.****************************************************.....******98..75 PP
IS3_IS150_ORF2.curated 305 .remLeeqGirqSMSRKGnclDNavmEsffgtLKsEifygnlkkFeslddLeraItdYIey.YNheRIhlKLkgltPveYRt 384
+ +Lee i qSMSRKGnclDNa +E+ffg LK Ei+y +k++s+++L++ I+ YI y YN+ RI++KLkgl+Pv+ R
gi|328801650|gb|CBW53803.1| 156 *AKKLEENNITQSMSRKGNCLDNAIIENFFGLLKQEIYY--GEKYNSVEELTKRIHKYI-Y*YNNIRIKEKLKGLSPVQFRK 234
6689***********************************..67****************.*********************9 PP
IS3_IS150_ORF2.curated 385 qr 386
q+
gi|328801650|gb|CBW53803.1| 235 QS 236
97 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (243 residues)
Target model(s): 116 (57162 nodes)
Passed MSV filter: 38 (0.327586); expected 2.3 (0.02)
Passed bias filter: 38 (0.327586); expected 2.3 (0.02)
Passed Vit filter: 31 (0.267241); expected 0.1 (0.001)
Passed Fwd filter: 1 (0.198276); expected 0.0 (1e-05)
Initial search space (Z): 116 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.91u 0.30s 00:00:01.20 Elapsed: 00:00:01.71
# Mc/sec: 8.09
//