!autogenerated-by: DAG-Edit version 1.316
!saved-by: suzi
!date: Wed Feb 19 16:38:05 SGT 2003
!version: $Revision: 1.1 $
!type: % ISA Is a
!type: < PARTOF Part of
!Sequence_ontology_Lite_Version
!This is only for comment; not for implementation
!Comments to: song-devel@sourceforge.net
$Sequence_Feature_Ontology ; SO:0000000
%sofa ; GO:0000001
%feature ; SO:20000000
%chromosome ; GO:0000005
<centromere ; GO:0000004
<telomere ; GO:0000003
%gene ; SO:0000704
<regulatory_region ; SO:0005836
%enhancer ; SO:0000165
%TF_binding_site ; SO:0000235 ; synonym:transcription_factor_binding_site % nucleotide_motif ; SO:0000714
<transcript ; SO:0000673
%primary_transcript ; SO:0000185 ; synonym:precursor_RNA
<exon ; SO:0000147
<intron ; SO:0000188
%noncoding_primary_transcript ; SO:0000483
%micro_RNA_primary_transcript ; SO:0000647
%transfer_RNA_primary_transcript ; SO:0000210
<splice_site ; SO:0000162
%splice_acceptor ; SO:0000164 ; synonym:acceptor_splice_site
%transsplice_acceptor_site ; SO:0000706
%splice_donor ; SO:0000163 ; synonym:donor_splice_site
<transcription_start_site ; SO:0000315
%processed_transcript ; SO:0000233
<exon_junction ; SO:0000333
%mRNA ; SO:0000234 ; synonym:messenger_RNA
<coding_sequence ; SO:0000316
<coding_end ; SO:0000327
<coding_start ; SO:0000323
<untranslated_region ; SO:0000203 ; synonym:UTR
%five_prime_untranslated_region ; SO:0000204 ; synonym:5'-UTR
%three_prime_untranslated_region ; SO:0000205 ; synonym:3'-UTR
%ncRNA ; SO:0000655 ; synonym:noncoding_RNA
%miRNA ; SO:0000276 ; synonym:micro_RNA
%rRNA ; SO:0000252 ; synonym:ribosomal_RNA
%tRNA ; SO:0000253 ; synonym:transfer_RNA
<polyA_site ; SO:0000553
%match ; SO:0000343
%nucleotide_to_nucleotide_match ; SO:0000347
%cross_genome_match ; SO:0000177
%expressed_sequence_match ; GO:0000007
%cDNA_match ; SO:0000689 % RNAi_reagent ; GO:0000009
%EST_match ; SO:0000668
%translated_nucleotide_match ; SO:0000181
%nucleotide_to_protein_match ; SO:0000351
%nucleotide_motif ; SO:0000714
%CpG_island ; SO:0000307
%TF_binding_site ; SO:0000235 ; synonym:transcription_factor_binding_site % regulatory_region ; SO:0005836
%origin_of_replication ; SO:0000296
%pseudogene_region ; SO:0000336
%reagent ; SO:0000695
%assembly_component ; SO:0000143
%contig ; SO:0000149
%golden_path_region ; SO:0000688
%clone ; SO:0000151
%cDNA_clone ; GO:0000011
<clone_end ; SO:0000103
%genomic_clone ; GO:0000012
%databank_entry ; SO:2000061
%oligonucleotide ; SO:0000696 ; synonym:primer % RNAi_reagent ; GO:0000009
%pcr_product ; SO:0000006 ; synonym:amplicon
%STS ; GO:0000008 ; synonym:sequence_tag_site
%remark ; SO:0000700
%experimental_reagent_region ; SO:0000703
%RNAi_reagent ; GO:0000009
%cDNA_match ; SO:0000689 % expressed_sequence_match ; GO:0000007
%oligonucleotide ; SO:0000696 ; synonym:primer % reagent ; SO:0000695
%potential_sequencing_error ; SO:0000701
%repeat_region ; SO:0000657
%direct_repeat ; SO:0000314
%dispersed_repeat ; SO:0000658
%inverted_repeat ; SO:0000294
%repeat_family ; SO:0000187
%transposable_element ; SO:0000101
%DNA_transposon ; SO:0000182
%retrotransposon ; SO:0000180
%LTR_retrotransposon ; SO:0000186
%non_LTR_retrotransposon ; SO:0000189
%LINE_element ; SO:0000194
%SINE_element ; SO:0000206
%tandem_repeat ; SO:0000705
%microsatellite ; SO:0000289
%sequence_variant ; SO:0000109
%deletion ; SO:0000159
<deletion_junction ; SO:0000687
%insertion ; SO:0000667
%inversion ; SO:0000697
<inversion_junction ; SO:0000692
%substitution ; SO:1000002
%translocation_junction ; SO:0000691