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MEME - Motif discovery tool
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MEME version 4.9.0 (Release date: Wed Oct 3 11:07:26 EST 2012)
For further information on how to interpret these results or to get
a copy of the MEME software please access http://meme.nbcr.net.
This file may be used as input to the MAST algorithm for searching
sequence databases for matches to groups of motifs. MAST is available
for interactive use and downloading at http://meme.nbcr.net.
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REFERENCE
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If you use this program in your research, please cite:
Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to discover
motifs in biopolymers", Proceedings of the Second International
Conference on Intelligent Systems for Molecular Biology, pp. 28-36,
AAAI Press, Menlo Park, California, 1994.
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TRAINING SET
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DATAFILE= multibasic-uniq.fa
ALPHABET= ACDEFGHIKLMNPQRSTVWY
Sequence name Weight Length Sequence name Weight Length
------------- ------ ------ ------------- ------ ------
A/chicken/Bangladesh/830 1.0000 21 A/chicken/Egypt/39825/20 1.0000 21
A/ck/Indonesia/072/10 1.0000 21 A/duck/Bangladesh/5749/1 1.0000 21
A/mallard/Crimea/245/200 1.0000 21 A/environment/Bangladesh 1.0000 21
A/chicken/Egypt/111945V/ 1.0000 21 A/avian/New_York/Sg00372 1.0000 21
A/chicken/Egypt/1117AF/2 1.0000 21 A/wild_bird_feces/Cheons 1.0000 21
A/chicken/India/241272/2 1.0000 21 A/duck/Jiangxi/80/2005 1.0000 21
A/chicken/Inhu/BPPVRII/2 1.0000 21 A/duck/Guangxi/668/2004 1.0000 21
A/whooper_swan/Hokkaido/ 1.0000 21 A/duck/Vietnam/1/2010 1.0000 21
A/avian/New_York/Sg00387 1.0000 21 A/chicken/Cambodia/LC/20 1.0000 21
A/mallard/Maryland/786/2 1.0000 21 A/chicken/Egypt/128s/201 1.0000 21
A/guinea_fowl/Yangon/834 1.0000 21 A/chicken/WestJava/SmiAc 1.0000 21
A/Indonesia/625/2006 1.0000 21 A/Egypt/N07460/2012 1.0000 21
A/duck/Victoria/26/1981| 1.0000 21 A/duck/Viet_Nam/TG2401/2 1.0000 21
A/chicken/Egypt/398252/2 1.0000 21 A/environment/Maryland/1 1.0000 21
A/duck/New_Zealand/41/19 1.0000 21 A/heron/Cambodia/TM068/2 1.0000 21
A/chicken/Egypt/10117/20 1.0000 21 A/VietNam/HN31413/2008 1.0000 21
A/chicken/Egypt/398214/2 1.0000 21 A/chicken/Egypt/39823/20 1.0000 21
A/chicken/Belgium/150VB/ 1.0000 21 A/goose/Fujian/bb/2003 1.0000 21
A/Vietnam/UT30259/2004 1.0000 21 A/duck/Yunnan/47/2006 1.0000 21
A/chicken/Egypt/10259SF/ 1.0000 21 A/bird/Turkey/Unye_ist06 1.0000 21
A/chicken/Bangladesh/11r 1.0000 21 A/chicken/Vietnam/NCVD19 1.0000 21
A/swan/England/AV3142149 1.0000 21 A/chicken/Ibaraki/17/200 1.0000 21
A/chicken/Nepal/354/2010 1.0000 21 A/duck/Vietnam/NCVD366/2 1.0000 21
A/duck/Korea/GJ54/2004|G 1.0000 21 A/muscovy_duck/Vietnam/L 1.0000 21
A/duck/Egypt/1130AG/2011 1.0000 21 A/ck/Indonesia/091/10 1.0000 21
A/duck/Vietnam/9/2010 1.0000 21 A/duck/Hokkaido/Vac3/200 1.0000 21
A/Thailand/WRAIR1720H/20 1.0000 21 A/chicken/Cambodia/022LC 1.0000 21
A/spurwinged_goose/Niger 1.0000 21 A/pigeon/Egypt/SHAH5803/ 1.0000 21
A/whooper_swan/Mongolia/ 1.0000 21 A/chicken/Shan/2626/2007 1.0000 21
A/chicken/Italy/367/97|A 1.0000 21 A/turkey/Italy/1325/2005 1.0000 21
A/chicken/Egypt/1158SF/2 1.0000 21 A/chicken/Egypt/398220/2 1.0000 21
A/condor/Guangdong/139/2 1.0000 21 A/chicken/Shandong/A1/20 1.0000 21
A/chicken/Egypt/11764s/2 1.0000 21 A/swine/NorthSumatra/UT6 1.0000 21
A/o.bill_stork/Thailand/ 1.0000 21 A/chicken/Texas/2983132/ 1.0000 21
A/chicken/Bangladesh/11V 1.0000 21 A/chicken/Ibaraki/15/200 1.0000 21
A/chicken/Shandong/A10/2 1.0000 21 A/duck/Vietnam/OIE1287/2 1.0000 21
A/duck/Vietnam/NCVD1161/ 1.0000 21 A/duck/Ireland/113/1983| 1.0000 21
A/chicken/EastKalimantan 1.0000 21 A/duck/Vietnam/3/2010 1.0000 21
A/Muscovy_duck/Ca_Mau/11 1.0000 21 A/chicken/Turkey/Misinli 1.0000 21
A/chicken/Italy/9097/199 1.0000 21 A/mallard/Washington/456 1.0000 21
A/duck/Iran/11VIR53161/2 1.0000 21 A/Muscovy_Duck/Vietnam/1 1.0000 21
A/duck/Hunan/149/2005 1.0000 21 A/Egypt/4822NAMRU3/2009 1.0000 21
A/duck/Vietnam/NCVD1463/ 1.0000 21 A/poultry/Egypt/398256/2 1.0000 21
A/turkey/Italy/1980|GQ24 1.0000 21 A/goose/Bangladesh/11VIR 1.0000 21
A/mallard/Washington/454 1.0000 21 A/chicken/Cambodia/013LC 1.0000 21
A/chicken/Banten/PdglKas 1.0000 21 A/chicken/Vietnam/NCVD03 1.0000 21
A/wigeon/Ohio/379/1988|C 1.0000 21 A/chicken/Magelang/BBVW6 1.0000 21
A/chicken/Lampung/BPPVRI 1.0000 21 A/chick/Pennsylvania/1/1 1.0000 21
A/chicken/Liaoning/A1/20 1.0000 21 A/wild_bird_feces/Cheons 1.0000 21
A/chicken/Sikkim/151466/ 1.0000 21 A/environment/ChangSha/2 1.0000 21
A/chicken/CentralJava/UT 1.0000 21 A/Vietnam/HN36250/2010 1.0000 21
A/chicken/Guiyang/821/20 1.0000 21 A/owstons_civet/VietNam/ 1.0000 21
A/chicken/Bangladesh/11r 1.0000 21 A/environment/New_York/1 1.0000 21
A/domestic_goose/Hong_Ko 1.0000 21 A/Hubei/1/2010 1.0000 21
A/Hunan/1/2009 1.0000 21 A/chicken/Egypt/1123AL/2 1.0000 21
A/wood_duck/MD/04623/200 1.0000 21 A/chicken/Shanxi/2/2006 1.0000 21
A/quail/Egypt/1171SG/201 1.0000 21 A/duck/France/080036/200 1.0000 21
A/chicken/Yangon/182/201 1.0000 21 A/chicken/Scotland/59|X0 1.0000 21
A/chicken/Sharkia/CAI41/ 1.0000 21 A/mallard/Sweden/21/2002 1.0000 21
A/environment/Bangladesh 1.0000 21 A/chicken/Hebei/A8/2009 1.0000 21
A/chicken/Egypt/11VIR445 1.0000 21 A/duck/Guangxi/13/2004 1.0000 21
A/duck/France/090043/200 1.0000 21 A/chicken/Denpasar/BBVD1 1.0000 21
A/Egypt/N6774/2011 1.0000 21 A/parrot/CA/6032/04|DQ25 1.0000 21
A/Cambodia/VN05103/2005 1.0000 21 A_GenBank/heron/Cambodia 1.0000 21
A/chicken/Bangladesh/11r 1.0000 21 A/chicken/Tabanan/BBVD14 1.0000 21
A/great_cormorant/Tibet/ 1.0000 21 A/Egypt/321NAMRU3/2007 1.0000 21
A/chicken/Egypt/10512AG/ 1.0000 21 AHAH5_[11734;11734] 1.0000 21
A/Egypt/9174NAMRU3/2009 1.0000 21 A/Indonesia/NIHRD12379/2 1.0000 21
A/chicken/Korea/ES/03 1.0000 21 A/avian/New_York/Sg00377 1.0000 21
A/chicken/Vietnam/NCVD09 1.0000 21 A/Chicken/TurkeyMus/09rs 1.0000 21
A/duck/Hong_Kong/312/197 1.0000 21 A/Vietnam/UT3030/2003 1.0000 21
A/crow/Bangladesh/11rs19 1.0000 21 A/duck/Primorie/2633/200 1.0000 21
A/Indonesia/UT3006/2005 1.0000 21 A/duck/Qalubia/CAI11/201 1.0000 21
A/green_winged_teal/Dela 1.0000 21 A/chicken/Anhui/T5/2006 1.0000 21
A/chicken/Puebla/8623607 1.0000 21 A/duck/Guangxi/951/2005 1.0000 21
A/chicken/Egypt/1219s/20 1.0000 21 A/chicken/WestJava/SmiSu 1.0000 21
A/chicken/Cambodia/TLC2/ 1.0000 21 A/duck/France/05056a/200 1.0000 21
A/Shandong/1/2009 1.0000 21 A/chicken/Vietnam/NCVD40 1.0000 21
A/chicken/Queretaro/7653 1.0000 21 A/environment/Bangladesh 1.0000 21
A/barn_swallow/Hong_Kong 1.0000 21 A/duck/Primorie/2621/200 1.0000 21
A/chicken/BacLieuVietnam 1.0000 21 A_DISC/Cambodia/V0401301 1.0000 21
A/bar_headed_goose/Mongo 1.0000 21 A/chicken/Egypt/113Q/201 1.0000 21
A/quail/Thanatpin/2283/2 1.0000 21 A/chicken/Egypt/125s/201 1.0000 21
A/duck/Hong_Kong/698/197 1.0000 21 A/chicken/Egypt/209573/2 1.0000 21
A/chicken/Indonesia/SmiW 1.0000 21 A/turkey/Egypt/091QNLQP/ 1.0000 21
A/duck/Egypt/1053/2010 1.0000 21 A/Egypt/2786NAMRU3/2006 1.0000 21
A/mallard/Netherlands/3/ 1.0000 21 A/chicken/Bangladesh/11r 1.0000 21
A/chicken/Liaoning/23/20 1.0000 21 A/unknown/NY/98996/01|AY 1.0000 21
A/tern/South_Africa/1961 1.0000 21 A/chicken/Nepal/T1P/12 1.0000 21
A/marabou_stork/Cambodia 1.0000 21 A/chicken/Cambodia/67F1/ 1.0000 21
A/gadwall/California/442 1.0000 21 A/chicken/TanseMyanmar/S 1.0000 21
A/duck/Cao_Bang/43/2007 1.0000 21 A/chicken/Miyazaki/T10/2 1.0000 21
A/whitefaced_whistling_d 1.0000 21 A/muscovy_duck/Vietnam/N 1.0000 21
A/Canada_goose/Alaska//4 1.0000 21 A/chicken/Bangladesh/967 1.0000 21
A/chicken/Egypt/11VIR445 1.0000 21 A/Hong_Kong/7032/2012 1.0000 21
A/chicken/Vietnam/945/20 1.0000 21 A/ostrich/South_Africa/A 1.0000 21
A/wild_bird/Wisconsin/43 1.0000 21 A/spurwinged_goose/Niger 1.0000 21
A/duck/Vietnam/NCVD1026/ 1.0000 21 A/tern/South_Africa/1959 1.0000 21
A/muscovy_duck/Jakarta/S 1.0000 21 A/goose/Germany/R3160/09 1.0000 21
A/turkey/Ontario/7732/19 1.0000 21 A/chicken/Egypt/1090/201 1.0000 21
A/mallard/Netherlands/2/ 1.0000 21 A/chicken/Vietnam/NCVD18 1.0000 21
A/chicken/Texas/1672804/ 1.0000 21 A/duck/Italy/775/2004|CY 1.0000 21
A/chicken/Bangladesh/FD( 1.0000 21 A/chicken/Vietnam/NCVD40 1.0000 21
A/swan/Hokkaido/67/1996| 1.0000 21 A/chicken/Bangladesh/152 1.0000 21
A/chicken/Bangladesh/11r 1.0000 21 A/chicken/Indonesia/Suka 1.0000 21
A/gull/Pennsylvania/4175 1.0000 21 A/turkey/England/N28/73| 1.0000 21
A/chicken/Badung/BBVD302 1.0000 21 A/chicken/Bangladesh/11r 1.0000 21
A/chicken/Yichang/lung1/ 1.0000 21 A/avian/Missouri/4655937 1.0000 21
A/turkey/TX/14082/1982_H 1.0000 21 A/Cambodia/W0526301/2012 1.0000 21
A/chicken/Vietnam/NCVD11 1.0000 21 A/duck/Egypt/SHZA6605/20 1.0000 21
A/chicken/Shandong/A5/20 1.0000 21 A/chicken/VA/40018/1984_ 1.0000 21
A/common_magpie/HongKong 1.0000 21 A/shearwater/Australia/7 1.0000 21
A/Chicken/TurkeyEdirne/0 1.0000 21 A/goose/Guiyang/337/2006 1.0000 21
A/chicken/Egypt/11VIR445 1.0000 21 A/environment/Thailand/I 1.0000 21
A/wild_bird_feces/Byeong 1.0000 21 A/duck/Vietnam/NCVD422/2 1.0000 21
A/chicken/Bhutan/4/10 1.0000 21 A/turkey/MN/40550/1987_H 1.0000 21
A/chicken/Egypt/1085/201 1.0000 21 A/duck/France/06436/2006 1.0000 21
A/HongKong/6841/2010 1.0000 21 A/chicken/WestBengal/239 1.0000 21
A/duck/Bac_Lieu/1213/200 1.0000 21 A/cinnamon_teal/Californ 1.0000 21
A/Muscovy_duck/France/07 1.0000 21 A/chicken/Vietnam/4/2010 1.0000 21
A/chicken/Vietnam/NCVD01 1.0000 21 A/chicken/Puebla/1458665 1.0000 21
A/Northern_shoveler/Utah 1.0000 21 A/tundra_swan/Alaska//48 1.0000 21
A/chicken/Sheny/0606/200 1.0000 21 A/turkey/England/N28/73| 1.0000 21
A/duck/Iran/VIR53161/201 1.0000 21 A/chicken/Yangon/1023/20 1.0000 21
A/chicken/Vietnam/5/2010 1.0000 21 A/chicken/Hebei/326/2005 1.0000 21
A/chicken/Bangladesh/150 1.0000 21 A/wild_bird/Minnesota/46 1.0000 21
A/chicken/India/81766/20 1.0000 21
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COMMAND LINE SUMMARY
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This information can also be useful in the event you wish to report a
problem with the MEME software.
command: meme multibasic-uniq.fa -mod zoops -nmotifs 10
model: mod= zoops nmotifs= 10 evt= inf
object function= E-value of product of p-values
width: minw= 8 maxw= 21 minic= 0.00
width: wg= 11 ws= 1 endgaps= yes
nsites: minsites= 2 maxsites= 253 wnsites= 0.8
theta: prob= 1 spmap= pam spfuzz= 120
global: substring= yes branching= no wbranch= no
em: prior= megap b= 26565 maxiter= 50
distance= 1e-05
data: n= 5313 N= 253
sample: seed= 0 seqfrac= 1
Dirichlet mixture priors file: prior30.plib
Letter frequencies in dataset:
A 0.481 C 0.062 D 0.001 E 0.000 F 0.000 G 0.333 H 0.000 I 0.000 K 0.000
L 0.000 M 0.000 N 0.000 P 0.000 Q 0.000 R 0.001 S 0.000 T 0.122 V 0.000
W 0.000 Y 0.000
Background letter frequencies (from dataset with add-one prior applied):
A 0.479 C 0.062 D 0.001 E 0.000 F 0.000 G 0.332 H 0.000 I 0.000 K 0.001
L 0.000 M 0.000 N 0.001 P 0.000 Q 0.000 R 0.001 S 0.000 T 0.122 V 0.000
W 0.000 Y 0.000
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MOTIF 1 width = 21 sites = 47 llr = 971 E-value = 5.0e-239
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Motif 1 Description
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Simplified A 928298a29a:a::4::8:::
pos.-specific C :::::::8::::::49:1:::
probability D :::::::::::::::::::::
matrix E :::::::::::::::::::::
F :::::::::::::::::::::
G :82811::1:a:aa:::1:::
H :::::::::::::::::::::
I :::::::::::::::::::::
K :::::::::::::::::::::
L :::::::::::::::::::::
M :::::::::::::::::::::
N :::::::::::::::::::::
P :::::::::::::::::::::
Q :::::::::::::::::::::
R :::::::::::::::::::::
S :::::::::::::::::::::
T ::::::::::::::21a:9a9
V :::::::::::::::::::::
W :::::::::::::::::::::
Y :::::::::::::::::::::
bits 12.4
11.1
9.9
8.7
Relative 7.4
Entropy 6.2
(29.8 bits) 5.0
3.7 *
2.5 * ** ***
1.2 ** ** ** ******** ***
0.0 ---------------------
Multilevel AGAGAAACAAGAGGACTATTT
consensus A A C
sequence
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Motif 1 sites sorted by position p-value
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Sequence name Start P-value Site
------------- ----- --------- ---------------------
AHAH5_[11734;11734] 1 3.05e-19 . CNAAKWGAARGAGADRDNRKR
A/environment/New_York/1 1 7.24e-13 . AGAGAAACAAGAGGCCTATTT
A/Northern_shoveler/Utah 1 1.11e-12 . AGAGAAACAAGAGGCCTCTTT
A/gadwall/California/442 1 2.10e-12 . AGGGAAACAAGAGGCCTATTT
A/wigeon/Ohio/379/1988|C 1 2.82e-12 . AGAGAAACAAGAGGCCTGTTT
A/wild_bird/Minnesota/46 1 4.20e-12 . AGAGAAACAAGAGGTCTATTT
A/green_winged_teal/Dela 1 5.44e-12 . AGAAAAACAAGAGGCCTATTT
A/wood_duck/MD/04623/200 1 9.89e-12 . AGAGAAACAAGAGGACTATTT
A/mallard/Washington/454 1 9.89e-12 . AAAGAAACAAGAGGCCTATTT
A/tundra_swan/Alaska//48 1 1.29e-11 . AGAGGAACAAGAGGCCTATTT
A/duck/Victoria/26/1981| 1 1.29e-11 . AGGGAGACAAGAGGCCTATTT
A/cinnamon_teal/Californ 1 1.49e-11 . AAAGAAACAAGAGGCCTCTTT
A/turkey/TX/14082/1982_H 1 1.88e-11 . AGAGAAACAAGAGGTCTGTTT
A/avian/Missouri/4655937 1 1.88e-11 . AGAGAAACAAGAGGCTTATTT
A/unknown/NY/98996/01|AY 1 1.88e-11 . GGAGAAACAAGAGGCCTATTT
A/duck/Hong_Kong/698/197 1 2.08e-11 . AGAGAGACAAGAGGTCTATTT
A/mallard/Sweden/21/2002 1 2.67e-11 . CGAGAAACAAGAGGACTATTT
A/environment/Maryland/1 1 3.01e-11 . AGAGAAACAAGAGGCCCATTT
A/chicken/Texas/1672804/ 1 3.63e-11 . AGAGAAAAAAGAGGCCTATTT
A/goose/Germany/R3160/09 1 4.14e-11 . AGAGAGACAAGAGGACTATTT
A/mallard/Netherlands/2/ 1 5.83e-11 . AGAAAAACAAGAGGACTATTT
A/chicken/Ibaraki/17/200 1 5.83e-11 . AGGGAAACAAGAGGCTTATTT
A/shearwater/Australia/7 1 6.48e-11 . AGGGAGACAAGAGGTCTATTT
A/mallard/Crimea/245/200 1 6.48e-11 . AGAGAAACAAGAGGGCTATTT
A/duck/France/080036/200 1 8.17e-11 . AAAGAAACAAGAGGACTATTT
A/duck/Italy/775/2004|CY 1 9.22e-11 . AGAGATACAAGAGGACTATTT
A/duck/Hokkaido/Vac3/200 1 1.27e-10 . AGAGAAACAAGAGGACTATTC
A/parrot/CA/6032/04|DQ25 1 1.65e-10 . AAAGAAACAAGAGGCTTATTT
A/chicken/Ibaraki/15/200 1 1.65e-10 . AGAGAAACAAGAGGATTATTT
A/swan/Hokkaido/67/1996| 1 2.49e-10 . AGAGAAACAAGAGGACTACTT
A/duck/France/090043/200 1 2.89e-10 . AGAGAGACGAGAGGACTATTT
A/spurwinged_goose/Niger 1 2.89e-10 . AGAGAAAAAAGAGGACTATTT
A/duck/France/05056a/200 1 4.65e-10 . AAAGAAACAAGAGGGCTATTT
A/chicken/Texas/2983132/ 1 5.19e-10 . AGGAAAAAAAGAGGCCTATTT
A/duck/New_Zealand/41/19 1 6.33e-10 . AGAGACACAAGGGGCCTGTTT
A/chicken/Belgium/150VB/ 1 7.84e-10 . AAGGAGACAAGAGGACTATTT
A/duck/France/06436/2006 1 8.65e-10 . AAAGAAACAAGAGGACTATTC
A/Muscovy_duck/France/07 1 1.05e-09 . AAAGAAGCAAGAGGACTATTT
A/gull/Pennsylvania/4175 1 1.05e-09 . AGAGAAACAAAAGGTCTGTTT
A/chicken/Scotland/59|X0 1 5.46e-09 . AGGAAGAAAAGAGGTCTATTT
A/swan/England/AV3142149 1 5.93e-09 . AGAAAAAAGAGAGGACTATTT
A/duck/Hunan/149/2005 1 8.40e-09 . AGAAGAAAAAGAGGACTATTT
A/bar_headed_goose/Mongo 1 2.05e-08 . AGAAGAAAAAGAGGACTGTTT
A/chick/Pennsylvania/1/1 1 2.05e-08 . AGGAAAAAGAGAGGTCTGTTT
A/whooper_swan/Mongolia/ 1 5.15e-08 . ATTGAAACTAGAGGATTATTT
A/chicken/VA/40018/1984_ 1 8.00e-08 . AAGAAAAAGAGAGGTCTGTTT
A/mallard/Maryland/786/2 1 3.02e-04 . GGAGCAATAGCAGGATTCATA
--------------------------------------------------------------------------------
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Motif 1 block diagrams
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SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
AHAH5_[11734;11734] 3.1e-19 [1]
A/environment/New_York/1 7.2e-13 [1]
A/Northern_shoveler/Utah 1.1e-12 [1]
A/gadwall/California/442 2.1e-12 [1]
A/wigeon/Ohio/379/1988|C 2.8e-12 [1]
A/wild_bird/Minnesota/46 4.2e-12 [1]
A/green_winged_teal/Dela 5.4e-12 [1]
A/wood_duck/MD/04623/200 9.9e-12 [1]
A/mallard/Washington/454 9.9e-12 [1]
A/tundra_swan/Alaska//48 1.3e-11 [1]
A/duck/Victoria/26/1981| 1.3e-11 [1]
A/cinnamon_teal/Californ 1.5e-11 [1]
A/turkey/TX/14082/1982_H 1.9e-11 [1]
A/avian/Missouri/4655937 1.9e-11 [1]
A/unknown/NY/98996/01|AY 1.9e-11 [1]
A/duck/Hong_Kong/698/197 2.1e-11 [1]
A/mallard/Sweden/21/2002 2.7e-11 [1]
A/environment/Maryland/1 3e-11 [1]
A/chicken/Texas/1672804/ 3.6e-11 [1]
A/goose/Germany/R3160/09 4.1e-11 [1]
A/mallard/Netherlands/2/ 5.8e-11 [1]
A/chicken/Ibaraki/17/200 5.8e-11 [1]
A/shearwater/Australia/7 6.5e-11 [1]
A/mallard/Crimea/245/200 6.5e-11 [1]
A/duck/France/080036/200 8.2e-11 [1]
A/duck/Italy/775/2004|CY 9.2e-11 [1]
A/duck/Hokkaido/Vac3/200 1.3e-10 [1]
A/parrot/CA/6032/04|DQ25 1.7e-10 [1]
A/chicken/Ibaraki/15/200 1.7e-10 [1]
A/swan/Hokkaido/67/1996| 2.5e-10 [1]
A/duck/France/090043/200 2.9e-10 [1]
A/spurwinged_goose/Niger 2.9e-10 [1]
A/duck/France/05056a/200 4.7e-10 [1]
A/chicken/Texas/2983132/ 5.2e-10 [1]
A/duck/New_Zealand/41/19 6.3e-10 [1]
A/chicken/Belgium/150VB/ 7.8e-10 [1]
A/duck/France/06436/2006 8.6e-10 [1]
A/Muscovy_duck/France/07 1e-09 [1]
A/gull/Pennsylvania/4175 1e-09 [1]
A/chicken/Scotland/59|X0 5.5e-09 [1]
A/swan/England/AV3142149 5.9e-09 [1]
A/duck/Hunan/149/2005 8.4e-09 [1]
A/bar_headed_goose/Mongo 2e-08 [1]
A/chick/Pennsylvania/1/1 2e-08 [1]
A/whooper_swan/Mongolia/ 5.1e-08 [1]
A/chicken/VA/40018/1984_ 8e-08 [1]
A/mallard/Maryland/786/2 0.0003 [1]
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 1 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF 1 width=21 seqs=47
AHAH5_[11734;11734] ( 1) CNAAKWGAARGAGADRDNRKR 1
A/environment/New_York/1 ( 1) AGAGAAACAAGAGGCCTATTT 1
A/Northern_shoveler/Utah ( 1) AGAGAAACAAGAGGCCTCTTT 1
A/gadwall/California/442 ( 1) AGGGAAACAAGAGGCCTATTT 1
A/wigeon/Ohio/379/1988|C ( 1) AGAGAAACAAGAGGCCTGTTT 1
A/wild_bird/Minnesota/46 ( 1) AGAGAAACAAGAGGTCTATTT 1
A/green_winged_teal/Dela ( 1) AGAAAAACAAGAGGCCTATTT 1
A/wood_duck/MD/04623/200 ( 1) AGAGAAACAAGAGGACTATTT 1
A/mallard/Washington/454 ( 1) AAAGAAACAAGAGGCCTATTT 1
A/tundra_swan/Alaska//48 ( 1) AGAGGAACAAGAGGCCTATTT 1
A/duck/Victoria/26/1981| ( 1) AGGGAGACAAGAGGCCTATTT 1
A/cinnamon_teal/Californ ( 1) AAAGAAACAAGAGGCCTCTTT 1
A/turkey/TX/14082/1982_H ( 1) AGAGAAACAAGAGGTCTGTTT 1
A/avian/Missouri/4655937 ( 1) AGAGAAACAAGAGGCTTATTT 1
A/unknown/NY/98996/01|AY ( 1) GGAGAAACAAGAGGCCTATTT 1
A/duck/Hong_Kong/698/197 ( 1) AGAGAGACAAGAGGTCTATTT 1
A/mallard/Sweden/21/2002 ( 1) CGAGAAACAAGAGGACTATTT 1
A/environment/Maryland/1 ( 1) AGAGAAACAAGAGGCCCATTT 1
A/chicken/Texas/1672804/ ( 1) AGAGAAAAAAGAGGCCTATTT 1
A/goose/Germany/R3160/09 ( 1) AGAGAGACAAGAGGACTATTT 1
A/mallard/Netherlands/2/ ( 1) AGAAAAACAAGAGGACTATTT 1
A/chicken/Ibaraki/17/200 ( 1) AGGGAAACAAGAGGCTTATTT 1
A/shearwater/Australia/7 ( 1) AGGGAGACAAGAGGTCTATTT 1
A/mallard/Crimea/245/200 ( 1) AGAGAAACAAGAGGGCTATTT 1
A/duck/France/080036/200 ( 1) AAAGAAACAAGAGGACTATTT 1
A/duck/Italy/775/2004|CY ( 1) AGAGATACAAGAGGACTATTT 1
A/duck/Hokkaido/Vac3/200 ( 1) AGAGAAACAAGAGGACTATTC 1
A/parrot/CA/6032/04|DQ25 ( 1) AAAGAAACAAGAGGCTTATTT 1
A/chicken/Ibaraki/15/200 ( 1) AGAGAAACAAGAGGATTATTT 1
A/swan/Hokkaido/67/1996| ( 1) AGAGAAACAAGAGGACTACTT 1
A/duck/France/090043/200 ( 1) AGAGAGACGAGAGGACTATTT 1
A/spurwinged_goose/Niger ( 1) AGAGAAAAAAGAGGACTATTT 1
A/duck/France/05056a/200 ( 1) AAAGAAACAAGAGGGCTATTT 1
A/chicken/Texas/2983132/ ( 1) AGGAAAAAAAGAGGCCTATTT 1
A/duck/New_Zealand/41/19 ( 1) AGAGACACAAGGGGCCTGTTT 1
A/chicken/Belgium/150VB/ ( 1) AAGGAGACAAGAGGACTATTT 1
A/duck/France/06436/2006 ( 1) AAAGAAACAAGAGGACTATTC 1
A/Muscovy_duck/France/07 ( 1) AAAGAAGCAAGAGGACTATTT 1
A/gull/Pennsylvania/4175 ( 1) AGAGAAACAAAAGGTCTGTTT 1
A/chicken/Scotland/59|X0 ( 1) AGGAAGAAAAGAGGTCTATTT 1
A/swan/England/AV3142149 ( 1) AGAAAAAAGAGAGGACTATTT 1
A/duck/Hunan/149/2005 ( 1) AGAAGAAAAAGAGGACTATTT 1
A/bar_headed_goose/Mongo ( 1) AGAAGAAAAAGAGGACTGTTT 1
A/chick/Pennsylvania/1/1 ( 1) AGGAAAAAGAGAGGTCTGTTT 1
A/whooper_swan/Mongolia/ ( 1) ATTGAAACTAGAGGATTATTT 1
A/chicken/VA/40018/1984_ ( 1) AAGAAAAAGAGAGGTCTGTTT 1
A/mallard/Maryland/786/2 ( 1) GGAGCAATAGCAGGATTCATA 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 21 n= 253 bayes= 3.90811 E= 5.0e-239
90 -56 -60 174 142 -291 71 203 -4 259 154 54 235 175 -78 517 -525 377 -128 -25
-167 -590 204 358 201 124 239 247 205 279 197 509 293 282 96 508 -273 342 7 107
69 -571 -100 118 89 -81 33 138 -66 196 96 34 230 146 -121 493 -238 319 -177 -72
-121 -641 -19 153 68 123 59 106 -9 161 58 61 191 129 -94 427 -609 255 -157 -60
83 -161 94 349 310 -252 214 386 505 442 329 162 273 302 74 629 -443 554 32 133
68 -158 64 317 279 -135 185 354 146 410 298 139 264 276 44 606 -243 522 559 103
98 -625 -131 77 52 -292 2 93 -101 157 47 -17 181 98 -159 434 -598 268 -202 -104
-115 359 -108 110 85 -668 28 137 -74 191 90 29 229 142 -126 489 -238 315 -182 -76
87 -557 -81 145 114 -196 51 169 -36 226 123 44 232 159 -101 504 -238 347 -154 -50
96 -547 -53 178 143 -381 73 204 8 262 154 52 223 173 421 508 -536 377 -125 -23
-438 -209 245 398 231 148 276 278 248 305 226 301 312 313 137 513 -552 353 47 144
101 -633 -136 70 46 -385 -3 85 -108 150 39 -23 176 92 -165 427 -605 260 -206 -109
-965 -907 -110 29 -56 159 -32 -75 -117 17 -143 -80 40 -20 -205 127 -901 -11 -235 -158
-440 -623 223 375 209 151 254 254 225 283 202 277 289 290 115 487 -578 328 25 122
-26 251 481 124 87 -290 39 134 -62 192 93 49 232 149 -120 493 46 315 -180 -72
-681 378 -119 89 66 -770 18 119 -55 163 45 -27 152 93 418 377 -1 226 -201 -78
-679 -162 475 225 185 -776 161 323 128 289 245 216 224 268 11 592 292 386 -74 30
65 1 -57 166 131 -119 67 189 -14 246 142 523 236 172 -86 513 -526 365 -139 -34
-422 -164 71 261 227 -711 195 367 169 334 292 251 273 311 415 642 287 437 -36 66
-891 -794 -111 53 23 -922 11 119 524 117 38 15 80 88 -142 375 299 178 -207 -111
-420 -68 64 254 221 -707 188 359 160 327 284 243 270 304 416 635 284 431 -43 60
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 21 nsites= 47 E= 5.0e-239
0.914894 0.042553 0.000000 0.000000 0.000000 0.042553 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.191489 0.000000 0.000000 0.000000 0.000000 0.765957 0.000000 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.000000 0.000000
0.787234 0.000000 0.000000 0.000000 0.000000 0.191489 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.000000 0.000000
0.212766 0.000000 0.000000 0.000000 0.000000 0.787234 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.893617 0.021277 0.000000 0.000000 0.000000 0.063830 0.000000 0.000000 0.021277 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.787234 0.021277 0.000000 0.000000 0.000000 0.148936 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.021277 0.000000
0.957447 0.000000 0.000000 0.000000 0.000000 0.042553 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.212766 0.765957 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.000000 0.000000
0.893617 0.000000 0.000000 0.000000 0.000000 0.085106 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.000000 0.000000
0.957447 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.000000 0.000000 0.000000 0.000000
0.021277 0.021277 0.000000 0.000000 0.000000 0.957447 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.978723 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.021277 0.000000 0.000000 0.000000 0.000000 0.978723 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.404255 0.361702 0.021277 0.000000 0.000000 0.042553 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.170213 0.000000 0.000000 0.000000
0.000000 0.851064 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.127660 0.000000 0.000000 0.000000
0.000000 0.021277 0.021277 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.957447 0.000000 0.000000 0.000000
0.765957 0.063830 0.000000 0.000000 0.000000 0.148936 0.000000 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.021277 0.021277 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.936170 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.978723 0.000000 0.000000 0.000000
0.021277 0.042553 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.914894 0.000000 0.000000 0.000000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 1 regular expression
--------------------------------------------------------------------------------
AGA[GA]AAA[CA]AAGAGG[AC]CTATTT
--------------------------------------------------------------------------------
Time 54.91 secs.
********************************************************************************
********************************************************************************
MOTIF 2 width = 21 sites = 93 llr = 1061 E-value = 4.5e-207
********************************************************************************
--------------------------------------------------------------------------------
Motif 2 Description
--------------------------------------------------------------------------------
Simplified A 8:9:a28189:aa19a89a75
pos.-specific C ::::::::1::::::::::::
probability D :::::::::::::::::::::
matrix E :::::::::::::::::::::
F :::::::::::::::::::::
G 291a:82911a::91:21:35
H :::::::::::::::::::::
I :::::::::::::::::::::
K :::::::::::::::::::::
L :::::::::::::::::::::
M :::::::::::::::::::::
N :::::::::::::::::::::
P :::::::::::::::::::::
Q :::::::::::::::::::::
R :::::::::::::::::::::
S :::::::::::::::::::::
T :1:::::::::::::::::::
V :::::::::::::::::::::
W :::::::::::::::::::::
Y :::::::::::::::::::::
bits 12.4
11.1
9.9
8.7
Relative 7.4
Entropy 6.2
(16.5 bits) 5.0
3.7
2.5
1.2 * *** * ******* *
0.0 ---------------------
Multilevel AGAGAGAGAAGAAGAAAAAAG
consensus G AG GA
sequence
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 2 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- ---------------------
A/great_cormorant/Tibet/ 1 3.08e-09 . GGARAGAGAAGAAGAAAAAAG
A/chicken/Shan/2626/2007 1 1.84e-08 . AGAGAGAGAAGAAGAAAAAAG
A/duck/Vietnam/OIE1287/2 1 3.14e-08 . AGAGAGAGAAGAAGAAAAAGG
A/muscovy_duck/Jakarta/S 1 5.58e-08 . AGAGAGAGCAGAAGAAAAAAG
A/Vietnam/UT3030/2003 1 5.58e-08 . AGAGAGAGAAGAAGAAAAAAA
A/chicken/Magelang/BBVW6 1 7.67e-08 . AGAGAGAGCAGAAGAAAAAGG
A/chicken/Vietnam/NCVD19 1 7.67e-08 . AGAGAGAGAAGAAGAAAAAGA
A/duck/Bac_Lieu/1213/200 1 9.16e-08 . AGAGAGGGAAGAAGAAAAAAG
A/chicken/Sharkia/CAI41/ 1 1.04e-07 . GGAGAGAGAAGAAGAAAAAAG
A/chicken/Tabanan/BBVD14 1 2.08e-07 . AGAGAGAGAAGAAGAAAGAAG
A/duck/Jiangxi/80/2005 1 2.08e-07 . AGAGAAAGAAGAAGAAAAAAG
A/chicken/Badung/BBVD302 1 2.17e-07 . ATAGAGAGAAGAAGAAAAAAG
A/chicken/Banten/PdglKas 1 2.53e-07 . AGAGAGAGGAGAAGAAAAAAG
A/o.bill_stork/Thailand/ 1 2.53e-07 . AGAGAGAGAAGACGAAAAAAG
A/chicken/Bangladesh/150 1 3.10e-07 . GGAGAGAGAAGAAGAAAAAGA
A/chicken/Yangon/182/201 1 3.10e-07 . AGAGAGAGAAGAAGAAGAAAA
A/chicken/Shandong/A1/20 1 3.10e-07 . AGAGAAAGAAGAAGAAAAAGG
A/duck/Qalubia/CAI11/201 1 3.89e-07 . GGAGAGGGAAGAAGAAAAAAG
A/Indonesia/UT3006/2005 1 3.89e-07 . AGAGAAAGCAGAAGAAAAAAG
A/goose/Fujian/bb/2003 1 3.89e-07 . AGAGAGAGAAGAAGGAAAAAG
A/environment/Thailand/I 1 4.76e-07 . AGAGAGAGAGGAAGAAAAAAG
A/chicken/EastKalimantan 1 4.76e-07 . AGAGAGAGTAGAAGAAAAAAG
A/swine/NorthSumatra/UT6 1 4.76e-07 . AGGGAGAGAAGAAGAAAAAAG
A/duck/Cao_Bang/43/2007 1 5.46e-07 . AGAGAAAGAAGAAGAAAAAGA
A/muscovy_duck/Vietnam/N 1 6.23e-07 . AGAGAAGGAAGAAGAAAAAAG
A/Indonesia/NIHRD12379/2 1 6.23e-07 . AGAGAGAGCAGAAGGAAAAAG
A/Egypt/321NAMRU3/2007 1 6.23e-07 . GGAGAGAGAAGAAGAAGAAAG
A/chicken/India/81766/20 1 7.12e-07 . GGAGAGAGAAGAAGAAAGAAG
A/chicken/Bangladesh/967 1 7.12e-07 . GGAGAAAGAAGAAGAAAAAAG
A/chicken/Nepal/T1P/12 1 7.12e-07 . AGAGAGAGGAGAAGAAAAAGA
A/Thailand/WRAIR1720H/20 1 7.12e-07 . AGAGAGAAAAGAAGAAAAAAG
A/goose/Guiyang/337/2006 1 7.95e-07 . AGAGAGAGAAGGAGAAAAAAG
A/Muscovy_duck/Ca_Mau/11 1 7.95e-07 . AGAGAGGGGAGAAGAAAAAAG
A/owstons_civet/VietNam/ 1 8.77e-07 . AGAGAGAGAAGAAGGAAAAGA
A/chicken/Bangladesh/152 1 1.20e-06 . AGGGAGAGAAGAAGAAAAAGA
A/chicken/Liaoning/23/20 1 1.20e-06 . GGAGAGAGAAGAAGGAAAAAG
A/condor/Guangdong/139/2 1 1.20e-06 . AGAGGGAGAAGAAGAAAAAAG
A/muscovy_duck/Vietnam/L 1 1.20e-06 . ATAGAGAGAAGAAGAAGAAAG
A/chicken/Hebei/326/2005 1 1.32e-06 . AGAGAGGGAGGAAGAAAAAAG
A/chicken/Inhu/BPPVRII/2 1 1.32e-06 . AGGGAGGGAAGAAGAAAAAAG
A/chicken/WestBengal/239 1 1.45e-06 . GGAGAGAGGAGAAGAAAAAAA
A/bird/Turkey/Unye_ist06 1 1.45e-06 . GGGGAGAGAAGAAGAAAAAAG
A/chicken/Sheny/0606/200 1 1.67e-06 . AGAGAGGGAAGAAGGAAAAAA
A/chicken/Miyazaki/T10/2 1 1.67e-06 . AGAGAGAAAAGAAGAAAAAGA
A/duck/Guangxi/668/2004 1 1.67e-06 . AGAGAGATAAGAAGAAAAAAG
A/Cambodia/W0526301/2012 1 1.92e-06 . AGAGAGGAAAGAAGAAAAAAG
A/chicken/Egypt/11VIR445 1 1.92e-06 . GGAGAGGGAAGAAGAAAGAAG
A/chicken/Egypt/113Q/201 1 1.92e-06 . GGAGAAGGAAGAAGAAAAAAG
A/Hubei/1/2010 1 1.92e-06 . AGAGAGAGAAGGAGAAAAAGA
A/duck/Vietnam/NCVD1463/ 1 1.92e-06 . ATAGAGAGAAGAAGAAGAAAA
A/chicken/Shandong/A10/2 1 1.92e-06 . AGAGGGAGAAGAAGAAAAAAA
A/chicken/Cambodia/67F1/ 1 2.10e-06 . AGAGAGGGAAGGAGAAAAAAG
A/chicken/Liaoning/A1/20 1 2.10e-06 . AGAGAGGGAGGAAGAAAAAAA
A/chicken/Egypt/1158SF/2 1 2.10e-06 . GGAGAGAAAAGAAGAAAAAAG
A/Shandong/1/2009 1 2.34e-06 . AGAGAAAGAAGAAGAAGAAGA
A/chicken/Egypt/1085/201 1 2.60e-06 . GGAGAGGGAAGAAGAAGAAAA
A/chicken/Hebei/A8/2009 1 2.60e-06 . AGAGGGAGAAGAAGAAAAAGA
A/chicken/CentralJava/UT 1 2.60e-06 . AGAGAGAGAAGAAAAAAAAGA
A_DISC/Cambodia/V0401301 1 2.91e-06 . AGAGTGGGAAGAAGAAAAAAG
A/chicken/Lampung/BPPVRI 1 2.91e-06 . AGAGAAAGCAGAAGGAAAAAG
A/chicken/Vietnam/NCVD40 1 3.27e-06 . AGAGAAAGGAGAAGAAAAAGA
A/duck/Vietnam/NCVD366/2 1 3.27e-06 . AGAGATGGAAGAAGAAAAAAG
A/duck/Yunnan/47/2006 1 3.27e-06 . AGAAAGAGAAGAAGAAAAAAG
A/chicken/Denpasar/BBVD1 1 3.61e-06 . AGAGAGAGAAGAAGAGAAAAG
A/Hunan/1/2009 1 3.93e-06 . AGAGAAAGAAGAAGGAAAAGA
A/chicken/Vietnam/NCVD09 1 4.40e-06 . ATAGAGGGAAGAAGAAGAAAA
A/duck/Guangxi/951/2005 1 5.43e-06 . AGTGAAAGAAGAAGAAAAAGA
A/environment/Bangladesh 1 5.95e-06 . AGGGAGAGGAGAAGAAAAAGA
A/environment/ChangSha/2 1 5.95e-06 . AGAGAGAGAAGAGGAAAAAGA
A/chicken/India/241272/2 1 5.95e-06 . GGAGAGAGGAGAAGAAAGAAA
A/quail/Thanatpin/2283/2 1 6.62e-06 . AGAGAAAAAAGAAGAAAAAGA
A/chicken/Sikkim/151466/ 1 6.62e-06 . GGTGAGAGAAGAAGAAAGAAG
A/chicken/Bangladesh/830 1 6.62e-06 . GGAGAGAGAAGAAAAAAAAGA
A/chicken/Shandong/A5/20 1 7.33e-06 . AGAGAGGGAGGAAGAAGAAAA
A/domestic_goose/Hong_Ko 1 8.76e-06 . ATAGAGAGGAGAAGAAGAAAA
A/chicken/Egypt/10512AG/ 1 9.60e-06 . GAAGAGGGAAGAAGAAAAAAG
A/duck/Guangxi/13/2004 1 9.60e-06 . AGAGAAAGAAGAAAAAAAAGA
A/Vietnam/UT30259/2004 1 9.60e-06 . AGAGAGAGAAGAAAAAAGAGA
A/spurwinged_goose/Niger 1 1.16e-05 . AGAGAAAAAAGAAGAAAGAAG
A/chicken/Vietnam/NCVD18 1 1.27e-05 . AAAGAAAGAAGAAGAAAAAGA
A/duck/Vietnam/NCVD1026/ 1 1.27e-05 . ATAGAGAGAGGAAGAAGAAAA
A/chicken/WestJava/SmiAc 1 1.27e-05 . AGAGAGAGCAGACGTAAAAAA
A/Vietnam/HN36250/2010 1 1.51e-05 . AGAGAAAAAAGAAGAAGAAAA
A/chicken/Vietnam/NCVD40 1 1.66e-05 . AGAGAAAGGAGAAGGAAAAGA
A/duck/Vietnam/NCVD422/2 1 1.96e-05 . AGGGAAAGGAGAAGAAAAAGA
A/barn_swallow/Hong_Kong 1 2.31e-05 . ATAGAAAGAAGAAGAAGGAAA
A/ck/Indonesia/072/10 1 2.31e-05 . AAGGAGGGAAGAAGAAAAAAG
A/chicken/Yangon/1023/20 1 2.51e-05 . AGAGAGAAAGGAAGAAGAAAA
A/chicken/Vietnam/NCVD01 1 2.94e-05 . AGAGAGGGAGGAAGAAGGAGA
A/Egypt/4822NAMRU3/2009 1 4.03e-05 . GGAAAGAGTAGAAGAAAAAAG
A/chicken/Korea/ES/03 1 5.89e-05 . AGAGAGAAAAGAAAAAAGAGA
A/duck/Viet_Nam/TG2401/2 1 6.33e-05 . AGAGAGAGAAGGAAAAAGAGA
A/whitefaced_whistling_d 1 1.11e-04 . AAAGAAAAAAGAAGAAAGAAG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 2 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
A/great_cormorant/Tibet/ 3.1e-09 [2]
A/chicken/Shan/2626/2007 1.8e-08 [2]
A/duck/Vietnam/OIE1287/2 3.1e-08 [2]
A/muscovy_duck/Jakarta/S 5.6e-08 [2]
A/Vietnam/UT3030/2003 5.6e-08 [2]
A/chicken/Magelang/BBVW6 7.7e-08 [2]
A/chicken/Vietnam/NCVD19 7.7e-08 [2]
A/duck/Bac_Lieu/1213/200 9.2e-08 [2]
A/chicken/Sharkia/CAI41/ 1e-07 [2]
A/chicken/Tabanan/BBVD14 2.1e-07 [2]
A/duck/Jiangxi/80/2005 2.1e-07 [2]
A/chicken/Badung/BBVD302 2.2e-07 [2]
A/chicken/Banten/PdglKas 2.5e-07 [2]
A/o.bill_stork/Thailand/ 2.5e-07 [2]
A/chicken/Bangladesh/150 3.1e-07 [2]
A/chicken/Yangon/182/201 3.1e-07 [2]
A/chicken/Shandong/A1/20 3.1e-07 [2]
A/duck/Qalubia/CAI11/201 3.9e-07 [2]
A/Indonesia/UT3006/2005 3.9e-07 [2]
A/goose/Fujian/bb/2003 3.9e-07 [2]
A/environment/Thailand/I 4.8e-07 [2]
A/chicken/EastKalimantan 4.8e-07 [2]
A/swine/NorthSumatra/UT6 4.8e-07 [2]
A/duck/Cao_Bang/43/2007 5.5e-07 [2]
A/muscovy_duck/Vietnam/N 6.2e-07 [2]
A/Indonesia/NIHRD12379/2 6.2e-07 [2]
A/Egypt/321NAMRU3/2007 6.2e-07 [2]
A/chicken/India/81766/20 7.1e-07 [2]
A/chicken/Bangladesh/967 7.1e-07 [2]
A/chicken/Nepal/T1P/12 7.1e-07 [2]
A/Thailand/WRAIR1720H/20 7.1e-07 [2]
A/goose/Guiyang/337/2006 7.9e-07 [2]
A/Muscovy_duck/Ca_Mau/11 7.9e-07 [2]
A/owstons_civet/VietNam/ 8.8e-07 [2]
A/chicken/Bangladesh/152 1.2e-06 [2]
A/chicken/Liaoning/23/20 1.2e-06 [2]
A/condor/Guangdong/139/2 1.2e-06 [2]
A/muscovy_duck/Vietnam/L 1.2e-06 [2]
A/chicken/Hebei/326/2005 1.3e-06 [2]
A/chicken/Inhu/BPPVRII/2 1.3e-06 [2]
A/chicken/WestBengal/239 1.5e-06 [2]
A/bird/Turkey/Unye_ist06 1.5e-06 [2]
A/chicken/Sheny/0606/200 1.7e-06 [2]
A/chicken/Miyazaki/T10/2 1.7e-06 [2]
A/duck/Guangxi/668/2004 1.7e-06 [2]
A/Cambodia/W0526301/2012 1.9e-06 [2]
A/chicken/Egypt/11VIR445 1.9e-06 [2]
A/chicken/Egypt/113Q/201 1.9e-06 [2]
A/Hubei/1/2010 1.9e-06 [2]
A/duck/Vietnam/NCVD1463/ 1.9e-06 [2]
A/chicken/Shandong/A10/2 1.9e-06 [2]
A/chicken/Cambodia/67F1/ 2.1e-06 [2]
A/chicken/Liaoning/A1/20 2.1e-06 [2]
A/chicken/Egypt/1158SF/2 2.1e-06 [2]
A/Shandong/1/2009 2.3e-06 [2]
A/chicken/Egypt/1085/201 2.6e-06 [2]
A/chicken/Hebei/A8/2009 2.6e-06 [2]
A/chicken/CentralJava/UT 2.6e-06 [2]
A_DISC/Cambodia/V0401301 2.9e-06 [2]
A/chicken/Lampung/BPPVRI 2.9e-06 [2]
A/chicken/Vietnam/NCVD40 3.3e-06 [2]
A/duck/Vietnam/NCVD366/2 3.3e-06 [2]
A/duck/Yunnan/47/2006 3.3e-06 [2]
A/chicken/Denpasar/BBVD1 3.6e-06 [2]
A/Hunan/1/2009 3.9e-06 [2]
A/chicken/Vietnam/NCVD09 4.4e-06 [2]
A/duck/Guangxi/951/2005 5.4e-06 [2]
A/environment/Bangladesh 6e-06 [2]
A/environment/ChangSha/2 6e-06 [2]
A/chicken/India/241272/2 6e-06 [2]
A/quail/Thanatpin/2283/2 6.6e-06 [2]
A/chicken/Sikkim/151466/ 6.6e-06 [2]
A/chicken/Bangladesh/830 6.6e-06 [2]
A/chicken/Shandong/A5/20 7.3e-06 [2]
A/domestic_goose/Hong_Ko 8.8e-06 [2]
A/chicken/Egypt/10512AG/ 9.6e-06 [2]
A/duck/Guangxi/13/2004 9.6e-06 [2]
A/Vietnam/UT30259/2004 9.6e-06 [2]
A/spurwinged_goose/Niger 1.2e-05 [2]
A/chicken/Vietnam/NCVD18 1.3e-05 [2]
A/duck/Vietnam/NCVD1026/ 1.3e-05 [2]
A/chicken/WestJava/SmiAc 1.3e-05 [2]
A/Vietnam/HN36250/2010 1.5e-05 [2]
A/chicken/Vietnam/NCVD40 1.7e-05 [2]
A/duck/Vietnam/NCVD422/2 2e-05 [2]
A/barn_swallow/Hong_Kong 2.3e-05 [2]
A/ck/Indonesia/072/10 2.3e-05 [2]
A/chicken/Yangon/1023/20 2.5e-05 [2]
A/chicken/Vietnam/NCVD01 2.9e-05 [2]
A/Egypt/4822NAMRU3/2009 4e-05 [2]
A/chicken/Korea/ES/03 5.9e-05 [2]
A/duck/Viet_Nam/TG2401/2 6.3e-05 [2]
A/whitefaced_whistling_d 0.00011 [2]
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 2 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF 2 width=21 seqs=93
A/great_cormorant/Tibet/ ( 1) GGARAGAGAAGAAGAAAAAAG 1
A/chicken/Shan/2626/2007 ( 1) AGAGAGAGAAGAAGAAAAAAG 1
A/duck/Vietnam/OIE1287/2 ( 1) AGAGAGAGAAGAAGAAAAAGG 1
A/muscovy_duck/Jakarta/S ( 1) AGAGAGAGCAGAAGAAAAAAG 1
A/Vietnam/UT3030/2003 ( 1) AGAGAGAGAAGAAGAAAAAAA 1
A/chicken/Magelang/BBVW6 ( 1) AGAGAGAGCAGAAGAAAAAGG 1
A/chicken/Vietnam/NCVD19 ( 1) AGAGAGAGAAGAAGAAAAAGA 1
A/duck/Bac_Lieu/1213/200 ( 1) AGAGAGGGAAGAAGAAAAAAG 1
A/chicken/Sharkia/CAI41/ ( 1) GGAGAGAGAAGAAGAAAAAAG 1
A/chicken/Tabanan/BBVD14 ( 1) AGAGAGAGAAGAAGAAAGAAG 1
A/duck/Jiangxi/80/2005 ( 1) AGAGAAAGAAGAAGAAAAAAG 1
A/chicken/Badung/BBVD302 ( 1) ATAGAGAGAAGAAGAAAAAAG 1
A/chicken/Banten/PdglKas ( 1) AGAGAGAGGAGAAGAAAAAAG 1
A/o.bill_stork/Thailand/ ( 1) AGAGAGAGAAGACGAAAAAAG 1
A/chicken/Bangladesh/150 ( 1) GGAGAGAGAAGAAGAAAAAGA 1
A/chicken/Yangon/182/201 ( 1) AGAGAGAGAAGAAGAAGAAAA 1
A/chicken/Shandong/A1/20 ( 1) AGAGAAAGAAGAAGAAAAAGG 1
A/duck/Qalubia/CAI11/201 ( 1) GGAGAGGGAAGAAGAAAAAAG 1
A/Indonesia/UT3006/2005 ( 1) AGAGAAAGCAGAAGAAAAAAG 1
A/goose/Fujian/bb/2003 ( 1) AGAGAGAGAAGAAGGAAAAAG 1
A/environment/Thailand/I ( 1) AGAGAGAGAGGAAGAAAAAAG 1
A/chicken/EastKalimantan ( 1) AGAGAGAGTAGAAGAAAAAAG 1
A/swine/NorthSumatra/UT6 ( 1) AGGGAGAGAAGAAGAAAAAAG 1
A/duck/Cao_Bang/43/2007 ( 1) AGAGAAAGAAGAAGAAAAAGA 1
A/muscovy_duck/Vietnam/N ( 1) AGAGAAGGAAGAAGAAAAAAG 1
A/Indonesia/NIHRD12379/2 ( 1) AGAGAGAGCAGAAGGAAAAAG 1
A/Egypt/321NAMRU3/2007 ( 1) GGAGAGAGAAGAAGAAGAAAG 1
A/chicken/India/81766/20 ( 1) GGAGAGAGAAGAAGAAAGAAG 1
A/chicken/Bangladesh/967 ( 1) GGAGAAAGAAGAAGAAAAAAG 1
A/chicken/Nepal/T1P/12 ( 1) AGAGAGAGGAGAAGAAAAAGA 1
A/Thailand/WRAIR1720H/20 ( 1) AGAGAGAAAAGAAGAAAAAAG 1
A/goose/Guiyang/337/2006 ( 1) AGAGAGAGAAGGAGAAAAAAG 1
A/Muscovy_duck/Ca_Mau/11 ( 1) AGAGAGGGGAGAAGAAAAAAG 1
A/owstons_civet/VietNam/ ( 1) AGAGAGAGAAGAAGGAAAAGA 1
A/chicken/Bangladesh/152 ( 1) AGGGAGAGAAGAAGAAAAAGA 1
A/chicken/Liaoning/23/20 ( 1) GGAGAGAGAAGAAGGAAAAAG 1
A/condor/Guangdong/139/2 ( 1) AGAGGGAGAAGAAGAAAAAAG 1
A/muscovy_duck/Vietnam/L ( 1) ATAGAGAGAAGAAGAAGAAAG 1
A/chicken/Hebei/326/2005 ( 1) AGAGAGGGAGGAAGAAAAAAG 1
A/chicken/Inhu/BPPVRII/2 ( 1) AGGGAGGGAAGAAGAAAAAAG 1
A/chicken/WestBengal/239 ( 1) GGAGAGAGGAGAAGAAAAAAA 1
A/bird/Turkey/Unye_ist06 ( 1) GGGGAGAGAAGAAGAAAAAAG 1
A/chicken/Sheny/0606/200 ( 1) AGAGAGGGAAGAAGGAAAAAA 1
A/chicken/Miyazaki/T10/2 ( 1) AGAGAGAAAAGAAGAAAAAGA 1
A/duck/Guangxi/668/2004 ( 1) AGAGAGATAAGAAGAAAAAAG 1
A/Cambodia/W0526301/2012 ( 1) AGAGAGGAAAGAAGAAAAAAG 1
A/chicken/Egypt/11VIR445 ( 1) GGAGAGGGAAGAAGAAAGAAG 1
A/chicken/Egypt/113Q/201 ( 1) GGAGAAGGAAGAAGAAAAAAG 1
A/Hubei/1/2010 ( 1) AGAGAGAGAAGGAGAAAAAGA 1
A/duck/Vietnam/NCVD1463/ ( 1) ATAGAGAGAAGAAGAAGAAAA 1
A/chicken/Shandong/A10/2 ( 1) AGAGGGAGAAGAAGAAAAAAA 1
A/chicken/Cambodia/67F1/ ( 1) AGAGAGGGAAGGAGAAAAAAG 1
A/chicken/Liaoning/A1/20 ( 1) AGAGAGGGAGGAAGAAAAAAA 1
A/chicken/Egypt/1158SF/2 ( 1) GGAGAGAAAAGAAGAAAAAAG 1
A/Shandong/1/2009 ( 1) AGAGAAAGAAGAAGAAGAAGA 1
A/chicken/Egypt/1085/201 ( 1) GGAGAGGGAAGAAGAAGAAAA 1
A/chicken/Hebei/A8/2009 ( 1) AGAGGGAGAAGAAGAAAAAGA 1
A/chicken/CentralJava/UT ( 1) AGAGAGAGAAGAAAAAAAAGA 1
A_DISC/Cambodia/V0401301 ( 1) AGAGTGGGAAGAAGAAAAAAG 1
A/chicken/Lampung/BPPVRI ( 1) AGAGAAAGCAGAAGGAAAAAG 1
A/chicken/Vietnam/NCVD40 ( 1) AGAGAAAGGAGAAGAAAAAGA 1
A/duck/Vietnam/NCVD366/2 ( 1) AGAGATGGAAGAAGAAAAAAG 1
A/duck/Yunnan/47/2006 ( 1) AGAAAGAGAAGAAGAAAAAAG 1
A/chicken/Denpasar/BBVD1 ( 1) AGAGAGAGAAGAAGAGAAAAG 1
A/Hunan/1/2009 ( 1) AGAGAAAGAAGAAGGAAAAGA 1
A/chicken/Vietnam/NCVD09 ( 1) ATAGAGGGAAGAAGAAGAAAA 1
A/duck/Guangxi/951/2005 ( 1) AGTGAAAGAAGAAGAAAAAGA 1
A/environment/Bangladesh ( 1) AGGGAGAGGAGAAGAAAAAGA 1
A/environment/ChangSha/2 ( 1) AGAGAGAGAAGAGGAAAAAGA 1
A/chicken/India/241272/2 ( 1) GGAGAGAGGAGAAGAAAGAAA 1
A/quail/Thanatpin/2283/2 ( 1) AGAGAAAAAAGAAGAAAAAGA 1
A/chicken/Sikkim/151466/ ( 1) GGTGAGAGAAGAAGAAAGAAG 1
A/chicken/Bangladesh/830 ( 1) GGAGAGAGAAGAAAAAAAAGA 1
A/chicken/Shandong/A5/20 ( 1) AGAGAGGGAGGAAGAAGAAAA 1
A/domestic_goose/Hong_Ko ( 1) ATAGAGAGGAGAAGAAGAAAA 1
A/chicken/Egypt/10512AG/ ( 1) GAAGAGGGAAGAAGAAAAAAG 1
A/duck/Guangxi/13/2004 ( 1) AGAGAAAGAAGAAAAAAAAGA 1
A/Vietnam/UT30259/2004 ( 1) AGAGAGAGAAGAAAAAAGAGA 1
A/spurwinged_goose/Niger ( 1) AGAGAAAAAAGAAGAAAGAAG 1
A/chicken/Vietnam/NCVD18 ( 1) AAAGAAAGAAGAAGAAAAAGA 1
A/duck/Vietnam/NCVD1026/ ( 1) ATAGAGAGAGGAAGAAGAAAA 1
A/chicken/WestJava/SmiAc ( 1) AGAGAGAGCAGACGTAAAAAA 1
A/Vietnam/HN36250/2010 ( 1) AGAGAAAAAAGAAGAAGAAAA 1
A/chicken/Vietnam/NCVD40 ( 1) AGAGAAAGGAGAAGGAAAAGA 1
A/duck/Vietnam/NCVD422/2 ( 1) AGGGAAAGGAGAAGAAAAAGA 1
A/barn_swallow/Hong_Kong ( 1) ATAGAAAGAAGAAGAAGGAAA 1
A/ck/Indonesia/072/10 ( 1) AAGGAGGGAAGAAGAAAAAAG 1
A/chicken/Yangon/1023/20 ( 1) AGAGAGAAAGGAAGAAGAAAA 1
A/chicken/Vietnam/NCVD01 ( 1) AGAGAGGGAGGAAGAAGGAGA 1
A/Egypt/4822NAMRU3/2009 ( 1) GGAAAGAGTAGAAGAAAAAAG 1
A/chicken/Korea/ES/03 ( 1) AGAGAGAAAAGAAAAAAGAGA 1
A/duck/Viet_Nam/TG2401/2 ( 1) AGAGAGAGAAGGAAAAAGAGA 1
A/whitefaced_whistling_d ( 1) AAAGAAAAAAGAAGAAAGAAG 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 2 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 21 n= 253 bayes= -2.7879 E= 4.5e-207
72 -749 -249 -50 -72 -70 -114 -39 -227 29 -84 -137 67 -22 -279 310 -719 136 -318 -223
-344 -673 49 210 76 140 95 123 55 161 75 116 181 151 -46 411 -81 242 -130 -31
90 -670 -203 16 -12 -213 -67 36 -169 94 -6 -67 132 46 -221 393 -243 218 -277 -173
-444 -670 187 339 169 151 216 216 189 242 164 241 247 252 316 445 -623 286 -13 84
98 -671 -204 15 -12 -331 -68 36 -169 94 -6 -68 131 45 -222 392 -334 217 -277 -173
-108 -673 -166 37 -7 119 -51 40 -141 96 -2 -46 134 53 -203 392 -335 216 -264 -160
70 -749 -249 -50 -72 -63 -114 -39 -227 29 -84 -137 67 -22 -279 310 -719 136 -318 -223
-223 -672 58 219 82 140 103 129 64 166 80 124 185 157 -38 413 -345 245 -123 -24
74 5 -200 21 -6 -163 -64 43 -164 100 0 -63 136 50 -216 398 -243 224 -273 -168
94 -754 -252 -54 -75 -213 -117 -43 -231 25 -89 -142 63 -26 -282 305 -724 131 -320 -226
-1220 -1064 -309 -185 -204 159 -192 -270 -327 -131 -355 -312 -101 -197 -390 -105 -1086 -214 -381 -314
99 -759 -254 -57 -78 -293 -119 -48 -233 22 -93 -146 60 -30 -285 300 -729 126 -322 -228
100 -150 -207 12 -15 -476 -70 33 -172 91 -10 -72 128 42 -224 388 -643 213 -279 -175
-294 -754 33 188 41 148 74 81 36 119 29 90 133 115 -69 337 -716 174 -150 -55
90 -671 -204 15 -12 -194 -68 35 -170 93 -7 -67 132 45 -222 393 -334 217 -278 -173
104 -775 -262 -69 -89 -485 -127 -62 -244 10 -109 -160 48 -43 -296 283 -746 109 -329 -237
82 -750 -250 -51 -72 -114 -115 -40 -228 28 -85 -138 67 -23 -280 309 -720 135 -318 -224
85 -751 -250 -51 -73 -136 -115 -41 -228 27 -86 -139 66 -23 -280 309 -721 134 -319 -224
106 -975 -324 -187 -188 -1037 -192 -227 -336 -107 -299 -307 -74 -175 -389 40 -969 -109 -380 -309
52 -750 -249 -50 -72 -10 -115 -40 -228 28 -85 -138 67 -22 -279 310 -719 135 -318 -223
-6 -756 -252 -55 -77 69 -118 -45 -232 23 -91 -143 62 -28 -284 303 -726 129 -321 -227
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 2 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 21 nsites= 93 E= 4.5e-207
0.795699 0.000000 0.000000 0.000000 0.000000 0.204301 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.043011 0.000000 0.000000 0.000000 0.000000 0.881720 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.075269 0.000000 0.000000 0.000000
0.903226 0.000000 0.000000 0.000000 0.000000 0.075269 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.021505 0.000000 0.000000 0.000000
0.021505 0.000000 0.000000 0.000000 0.000000 0.967742 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.010753 0.000000 0.000000 0.000000 0.000000 0.000000
0.956989 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.010753 0.000000 0.000000 0.000000
0.225806 0.000000 0.000000 0.000000 0.000000 0.763441 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.010753 0.000000 0.000000 0.000000
0.784946 0.000000 0.000000 0.000000 0.000000 0.215054 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.107527 0.000000 0.000000 0.000000 0.000000 0.881720 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.010753 0.000000 0.000000 0.000000
0.806452 0.064516 0.000000 0.000000 0.000000 0.107527 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.021505 0.000000 0.000000 0.000000
0.924731 0.000000 0.000000 0.000000 0.000000 0.075269 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.956989 0.000000 0.000000 0.000000 0.000000 0.043011 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.967742 0.021505 0.000000 0.000000 0.000000 0.010753 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.064516 0.000000 0.000000 0.000000 0.000000 0.935484 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.903226 0.000000 0.000000 0.000000 0.000000 0.086022 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.010753 0.000000 0.000000 0.000000
0.989247 0.000000 0.000000 0.000000 0.000000 0.010753 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.849462 0.000000 0.000000 0.000000 0.000000 0.150538 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.870968 0.000000 0.000000 0.000000 0.000000 0.129032 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.688172 0.000000 0.000000 0.000000 0.000000 0.311828 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.462366 0.000000 0.000000 0.000000 0.000000 0.537634 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 2 regular expression
--------------------------------------------------------------------------------
[AG]GAGA[GA][AG]GAAGAAGAAAAA[AG][GA]
--------------------------------------------------------------------------------
Time 56.02 secs.
********************************************************************************
********************************************************************************
MOTIF 3 width = 15 sites = 25 llr = 475 E-value = 2.5e-074
********************************************************************************
--------------------------------------------------------------------------------
Motif 3 Description
--------------------------------------------------------------------------------
Simplified A ::9:3::24::17:a
pos.-specific C 8:::::3:::9::1:
probability D :::::::::::::::
matrix E :::::::::::::::
F :::::::::::::::
G ::1::3786a:::::
H :::::::::::::::
I :::::::::::::::
K :::::::::::::::
L :::::::::::::::
M :::::::::::::::
N :::::::::::::::
P :::::::::::::::
Q :::::::::::::::
R :::::::::::::::
S :::::::::::::::
T 2a:a77::::1939:
V :::::::::::::::
W :::::::::::::::
Y :::::::::::::::
bits 12.4
11.1
9.9
8.7
Relative 7.4
Entropy 6.2
(27.4 bits) 5.0
3.7 * *
2.5 ** * ** *
1.2 ******** ******
0.0 ---------------
Multilevel CTATTTGGGGCTATA
consensus AGCAA T
sequence
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 3 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- ---------------
A/chicken/Bangladesh/FD( 1 4.15e-11 . CTATTTGGGGCTATA GCAGGT
A/tern/South_Africa/1959 4 4.15e-11 GGT CTATTTGGGGCTATA GCA
A/mallard/Netherlands/3/ 4 4.15e-11 GGA CTATTTGGGGCTATA GCA
A/duck/Primorie/2633/200 1 4.15e-11 . CTATTTGGGGCTATA GCAGGC
A/wild_bird_feces/Cheons 7 4.15e-11 AGAGGA CTATTTGGGGCTATA
A/chicken/Bangladesh/11r 1 8.33e-11 . CTATTTGGAGCTATA GCAGGT
A/turkey/Egypt/091QNLQP/ 1 8.33e-11 . CTATTTGGAGCTATA GCAGGG
A/duck/Hong_Kong/312/197 1 8.33e-11 . CTATTTGGAGCTATA GCAGGC
A/chicken/Bangladesh/11r 4 8.33e-11 GGA CTATTTGGAGCTATA GCA
A/chicken/Turkey/Misinli 7 8.33e-11 AGAGGA CTATTTGGAGCTATA
A/wild_bird_feces/Byeong 4 6.63e-10 GGA CTATTTGGGGCCATA GCA
A/ostrich/South_Africa/A 4 7.90e-10 GGA TTATTTGGGGCTATA GCA
A/whooper_swan/Hokkaido/ 7 8.51e-10 AGAGGA CTGTTTGGAGCTATA
A/chicken/Cambodia/TLC2/ 4 1.22e-09 GGA TTATTTGGAGCTATA GCA
A/chicken/Cambodia/013LC 7 1.22e-09 AGGGGA TTATTTGGAGCTATA
A/avian/New_York/Sg00387 4 3.23e-09 GGC CTATTTGGAGCAATA GCA
A/avian/New_York/Sg00372 1 3.23e-09 . CTATTTGGAGCAATA GCAGGA
A/chicken/Egypt/1219s/20 5 4.76e-09 GGAG CTATAGCAGGCTTTA TA
A/chicken/Egypt/128s/201 2 4.76e-09 G CTATAGCAGGCTTTA TAGAG
A/chicken/Bangladesh/11r 1 7.12e-09 . TTGTTTGGAGCTATA GCAGGG
A/duck/Primorie/2621/200 2 1.97e-08 G CTATAGCAGGCTTCA TAGAA
A/turkey/England/N28/73| 2 2.10e-08 G CTATAGCGGGTTTTA TAGAA
A/chicken/Egypt/125s/201 5 5.87e-08 GGAG CTATAGCAGGTTTTA TA
A/chicken/Egypt/398252/2 2 5.87e-08 G CTATAGCAGGTTTTA TAGAG
A/chicken/Italy/9097/199 2 1.05e-07 G CCATAGCAGGCTTCA TAGAG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 3 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
A/chicken/Bangladesh/FD( 4.2e-11 [3]_6
A/tern/South_Africa/1959 4.2e-11 3_[3]_3
A/mallard/Netherlands/3/ 4.2e-11 3_[3]_3
A/duck/Primorie/2633/200 4.2e-11 [3]_6
A/wild_bird_feces/Cheons 4.2e-11 6_[3]
A/chicken/Bangladesh/11r 8.3e-11 [3]_6
A/turkey/Egypt/091QNLQP/ 8.3e-11 [3]_6
A/duck/Hong_Kong/312/197 8.3e-11 [3]_6
A/chicken/Bangladesh/11r 8.3e-11 3_[3]_3
A/chicken/Turkey/Misinli 8.3e-11 6_[3]
A/wild_bird_feces/Byeong 6.6e-10 3_[3]_3
A/ostrich/South_Africa/A 7.9e-10 3_[3]_3
A/whooper_swan/Hokkaido/ 8.5e-10 6_[3]
A/chicken/Cambodia/TLC2/ 1.2e-09 3_[3]_3
A/chicken/Cambodia/013LC 1.2e-09 6_[3]
A/avian/New_York/Sg00387 3.2e-09 3_[3]_3
A/avian/New_York/Sg00372 3.2e-09 [3]_6
A/chicken/Egypt/1219s/20 4.8e-09 4_[3]_2
A/chicken/Egypt/128s/201 4.8e-09 1_[3]_5
A/chicken/Bangladesh/11r 7.1e-09 [3]_6
A/duck/Primorie/2621/200 2e-08 1_[3]_5
A/turkey/England/N28/73| 2.1e-08 1_[3]_5
A/chicken/Egypt/125s/201 5.9e-08 4_[3]_2
A/chicken/Egypt/398252/2 5.9e-08 1_[3]_5
A/chicken/Italy/9097/199 1.1e-07 1_[3]_5
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 3 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF 3 width=15 seqs=25
A/chicken/Bangladesh/FD( ( 1) CTATTTGGGGCTATA 1
A/tern/South_Africa/1959 ( 4) CTATTTGGGGCTATA 1
A/mallard/Netherlands/3/ ( 4) CTATTTGGGGCTATA 1
A/duck/Primorie/2633/200 ( 1) CTATTTGGGGCTATA 1
A/wild_bird_feces/Cheons ( 7) CTATTTGGGGCTATA 1
A/chicken/Bangladesh/11r ( 1) CTATTTGGAGCTATA 1
A/turkey/Egypt/091QNLQP/ ( 1) CTATTTGGAGCTATA 1
A/duck/Hong_Kong/312/197 ( 1) CTATTTGGAGCTATA 1
A/chicken/Bangladesh/11r ( 4) CTATTTGGAGCTATA 1
A/chicken/Turkey/Misinli ( 7) CTATTTGGAGCTATA 1
A/wild_bird_feces/Byeong ( 4) CTATTTGGGGCCATA 1
A/ostrich/South_Africa/A ( 4) TTATTTGGGGCTATA 1
A/whooper_swan/Hokkaido/ ( 7) CTGTTTGGAGCTATA 1
A/chicken/Cambodia/TLC2/ ( 4) TTATTTGGAGCTATA 1
A/chicken/Cambodia/013LC ( 7) TTATTTGGAGCTATA 1
A/avian/New_York/Sg00387 ( 4) CTATTTGGAGCAATA 1
A/avian/New_York/Sg00372 ( 1) CTATTTGGAGCAATA 1
A/chicken/Egypt/1219s/20 ( 5) CTATAGCAGGCTTTA 1
A/chicken/Egypt/128s/201 ( 2) CTATAGCAGGCTTTA 1
A/chicken/Bangladesh/11r ( 1) TTGTTTGGAGCTATA 1
A/duck/Primorie/2621/200 ( 2) CTATAGCAGGCTTCA 1
A/turkey/England/N28/73| ( 2) CTATAGCGGGTTTTA 1
A/chicken/Egypt/125s/201 ( 5) CTATAGCAGGTTTTA 1
A/chicken/Egypt/398252/2 ( 2) CTATAGCAGGTTTTA 1
A/chicken/Italy/9097/199 ( 2) CCATAGCAGGCTTCA 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 3 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 15 n= 1771 bayes= 7.27007 E= 2.5e-074
-645 376 -59 141 129 -726 76 206 -39 233 103 17 205 135 -98 412 25 289 -134 -19
-618 -75 62 244 220 -712 186 351 146 325 268 227 269 290 36 614 291 420 -37 67
89 -475 23 253 219 -208 148 280 77 338 228 123 294 244 -3 579 -466 451 -48 53
-910 -801 -108 32 30 -879 20 64 -91 115 -28 -45 112 53 -168 292 302 126 -174 -92
-78 -504 -6 202 174 -601 124 246 37 281 186 132 303 232 -31 573 250 397 -90 16
-650 -639 -37 120 81 -27 66 112 -41 174 50 50 201 131 -117 429 253 254 -150 -52
-712 215 -72 83 52 111 39 51 -76 136 -11 -16 167 82 -143 352 -673 189 -161 -72
-116 -537 135 300 189 118 194 232 141 278 184 208 304 257 47 538 -502 367 -28 71
-14 -524 -28 175 145 71 99 186 -6 247 142 93 286 200 -62 539 -492 363 -112 -10
-729 -729 104 252 116 157 152 135 103 189 78 150 202 178 0 355 -699 203 -65 23
-649 389 31 275 239 -749 174 337 71 349 240 92 235 218 11 399 -104 337 -71 60
-252 -76 84 282 251 -605 211 372 167 358 300 255 333 326 66 662 276 468 -14 90
55 -499 -21 194 166 -592 111 222 12 274 169 109 305 221 -44 564 115 394 -98 8
-618 25 44 227 204 -710 169 331 124 309 246 204 260 271 17 594 286 403 -52 53
104 -669 -98 78 66 -755 33 86 -85 164 19 -39 169 86 -147 374 -655 233 -159 -72
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 3 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 15 nsites= 25 E= 2.5e-074
0.000000 0.840000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.160000 0.000000 0.000000 0.000000
0.000000 0.040000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.960000 0.000000 0.000000 0.000000
0.920000 0.000000 0.000000 0.000000 0.000000 0.080000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
0.280000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.720000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.280000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.720000 0.000000 0.000000 0.000000
0.000000 0.280000 0.000000 0.000000 0.000000 0.720000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.240000 0.000000 0.000000 0.000000 0.000000 0.760000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.440000 0.000000 0.000000 0.000000 0.000000 0.560000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.880000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.120000 0.000000 0.000000 0.000000
0.080000 0.040000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.880000 0.000000 0.000000 0.000000
0.720000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.280000 0.000000 0.000000 0.000000
0.000000 0.080000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.920000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 3 regular expression
--------------------------------------------------------------------------------
CTAT[TA][TG][GC][GA][GA]GCT[AT]TA
--------------------------------------------------------------------------------
Time 56.86 secs.
********************************************************************************
********************************************************************************
MOTIF 4 width = 15 sites = 18 llr = 248 E-value = 1.6e-011
********************************************************************************
--------------------------------------------------------------------------------
Motif 4 Description
--------------------------------------------------------------------------------
Simplified A a:7:76:36::7:::
pos.-specific C ::::::::1::::::
probability D :::::::::::::::
matrix E :::::::::::::::
F :::::::::::::::
G ::3a:4a71aa::aa
H :::::::::::::::
I :::::::::::::::
K :::::::::::::::
L :::::::::::::::
M :::::::::::::::
N :::::::::::::::
P :::::::::::::::
Q :::::::::::::::
R :::::::::::::::
S :::::::::::::::
T :a::3:::3::3a::
V :::::::::::::::
W :::::::::::::::
Y :::::::::::::::
bits 12.4
11.1
9.9
8.7
Relative 7.4
Entropy 6.2
(19.9 bits) 5.0
3.7
2.5 * *
1.2 ** ** * ******
0.0 ---------------
Multilevel ATAGAAGGAGGATGG
consensus G TG AT T
sequence
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 4 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- ---------------
A/VietNam/HN31413/2008 1 1.21e-07 . ATAGAGGGTGGATGG CAGGGA
A/Muscovy_Duck/Vietnam/1 1 2.36e-07 . ATAGAGGGCGGATGG CAGGGA
A/chicken/Vietnam/NCVD11 4 3.75e-07 TTT ATAGAAGGAGGATGG CAG
A/environment/Bangladesh 1 3.75e-07 . ATAGAAGGAGGATGG CAGGGA
A/chicken/Queretaro/7653 4 3.75e-07 TTC ATAGAAGGAGGATGG CAA
A_GenBank/heron/Cambodia 7 3.75e-07 GGGTTT ATAGAAGGAGGATGG
A/heron/Cambodia/TM068/2 1 3.75e-07 . ATAGAAGGAGGATGG CAGGGG
A/Hong_Kong/7032/2012 4 4.39e-07 TTT ATAGAGGGAGGATGG CAG
A/duck/Vietnam/NCVD1161/ 4 4.39e-07 TTT ATAGAGGGAGGATGG CAA
A/pigeon/Egypt/SHAH5803/ 1 4.39e-07 . ATAGAGGGAGGATGG CAGGGA
A/environment/Bangladesh 1 4.39e-07 . ATAGAGGGAGGATGG CAGGGG
A/chicken/Egypt/39825/20 7 4.39e-07 GGTTTT ATAGAGGGAGGATGG
A/chicken/TanseMyanmar/S 4 6.25e-07 GGA ATGGTAGATGGTTGG TAT
A/Egypt/2786NAMRU3/2006 7 6.25e-07 CAGGGA ATGGTAGATGGTTGG
A/chicken/BacLieuVietnam 4 6.25e-07 GGG ATGGTAGATGGTTGG TAT
A/poultry/Egypt/398256/2 1 6.25e-07 . ATGGTAGATGGTTGG TATGGG
A/chicken/Nepal/354/2010 4 7.69e-07 GGA ATGGTAGACGGTTGG TAT
A/Indonesia/625/2006 4 1.47e-06 TTT ATAGAAGGGGGATGG CAG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 4 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
A/VietNam/HN31413/2008 1.2e-07 [4]_6
A/Muscovy_Duck/Vietnam/1 2.4e-07 [4]_6
A/chicken/Vietnam/NCVD11 3.7e-07 3_[4]_3
A/environment/Bangladesh 3.7e-07 [4]_6
A/chicken/Queretaro/7653 3.7e-07 3_[4]_3
A_GenBank/heron/Cambodia 3.7e-07 6_[4]
A/heron/Cambodia/TM068/2 3.7e-07 [4]_6
A/Hong_Kong/7032/2012 4.4e-07 3_[4]_3
A/duck/Vietnam/NCVD1161/ 4.4e-07 3_[4]_3
A/pigeon/Egypt/SHAH5803/ 4.4e-07 [4]_6
A/environment/Bangladesh 4.4e-07 [4]_6
A/chicken/Egypt/39825/20 4.4e-07 6_[4]
A/chicken/TanseMyanmar/S 6.2e-07 3_[4]_3
A/Egypt/2786NAMRU3/2006 6.2e-07 6_[4]
A/chicken/BacLieuVietnam 6.2e-07 3_[4]_3
A/poultry/Egypt/398256/2 6.2e-07 [4]_6
A/chicken/Nepal/354/2010 7.7e-07 3_[4]_3
A/Indonesia/625/2006 1.5e-06 3_[4]_3
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 4 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF 4 width=15 seqs=18
A/VietNam/HN31413/2008 ( 1) ATAGAGGGTGGATGG 1
A/Muscovy_Duck/Vietnam/1 ( 1) ATAGAGGGCGGATGG 1
A/chicken/Vietnam/NCVD11 ( 4) ATAGAAGGAGGATGG 1
A/environment/Bangladesh ( 1) ATAGAAGGAGGATGG 1
A/chicken/Queretaro/7653 ( 4) ATAGAAGGAGGATGG 1
A_GenBank/heron/Cambodia ( 7) ATAGAAGGAGGATGG 1
A/heron/Cambodia/TM068/2 ( 1) ATAGAAGGAGGATGG 1
A/Hong_Kong/7032/2012 ( 4) ATAGAGGGAGGATGG 1
A/duck/Vietnam/NCVD1161/ ( 4) ATAGAGGGAGGATGG 1
A/pigeon/Egypt/SHAH5803/ ( 1) ATAGAGGGAGGATGG 1
A/environment/Bangladesh ( 1) ATAGAGGGAGGATGG 1
A/chicken/Egypt/39825/20 ( 7) ATAGAGGGAGGATGG 1
A/chicken/TanseMyanmar/S ( 4) ATGGTAGATGGTTGG 1
A/Egypt/2786NAMRU3/2006 ( 7) ATGGTAGATGGTTGG 1
A/chicken/BacLieuVietnam ( 4) ATGGTAGATGGTTGG 1
A/poultry/Egypt/398256/2 ( 1) ATGGTAGATGGTTGG 1
A/chicken/Nepal/354/2010 ( 4) ATGGTAGACGGTTGG 1
A/Indonesia/625/2006 ( 4) ATAGAAGGGGGATGG 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 4 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 15 n= 1771 bayes= 5.89847 E= 1.6e-011
103 -568 -19 181 160 -667 110 204 14 270 138 48 237 174 -60 477 -563 356 -81 13
-802 -703 -25 128 119 -810 101 195 17 211 105 77 185 158 -75 435 301 255 -102 -11
54 -459 35 247 214 -33 160 263 66 322 216 154 340 263 3 602 -431 439 -48 55
-637 -650 192 341 193 154 233 222 192 266 167 242 277 262 86 446 -613 291 11 103
53 -448 35 253 222 -543 165 284 72 332 227 162 353 273 11 615 111 451 -45 62
31 -468 26 232 199 16 151 244 50 304 199 149 339 256 -8 595 -436 421 -61 44
-637 -650 192 341 193 154 233 222 192 266 167 242 277 262 86 446 -613 291 11 103
-101 -489 172 339 231 111 233 275 178 321 227 247 348 299 85 585 -454 414 10 110
18 75 47 272 242 -250 179 299 91 354 251 174 364 289 27 633 108 474 -27 78
-637 -650 192 341 193 154 233 222 192 266 167 242 277 262 86 446 -613 291 11 103
-637 -650 192 341 193 154 233 222 192 266 167 242 277 262 86 446 -613 291 11 103
53 -448 35 253 222 -543 165 284 72 332 227 162 353 273 11 615 111 451 -45 62
-802 -703 -25 128 119 -810 101 195 17 211 105 77 185 158 -75 435 301 255 -102 -11
-637 -650 192 341 193 154 233 222 192 266 167 242 277 262 86 446 -613 291 11 103
-637 -650 192 341 193 154 233 222 192 266 167 242 277 262 86 446 -613 291 11 103
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 4 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 15 nsites= 18 E= 1.6e-011
1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
0.722222 0.000000 0.000000 0.000000 0.000000 0.277778 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.722222 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.277778 0.000000 0.000000 0.000000
0.611111 0.000000 0.000000 0.000000 0.000000 0.388889 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.277778 0.000000 0.000000 0.000000 0.000000 0.722222 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.555556 0.111111 0.000000 0.000000 0.000000 0.055556 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.277778 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.722222 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.277778 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 4 regular expression
--------------------------------------------------------------------------------
AT[AG]G[AT][AG]G[GA][AT]GG[AT]TGG
--------------------------------------------------------------------------------
Time 57.67 secs.
********************************************************************************
********************************************************************************
MOTIF 5 width = 14 sites = 12 llr = 196 E-value = 8.3e-010
********************************************************************************
--------------------------------------------------------------------------------
Motif 5 Description
--------------------------------------------------------------------------------
Simplified A :7a1a::81:61::
pos.-specific C a2::::713::::3
probability D ::::::::::::1:
matrix E ::::::::::::::
F ::::::::::::::
G :::2:a3:773:::
H ::::::::::::::
I ::::::::::::::
K ::::::::::::::
L ::::::::::::::
M ::::::::::::::
N ::::::::::::::
P ::::::::::::::
Q ::::::::::::::
R ::::::::::::::
S ::::::::::::::
T :2:8::11:32997
V ::::::::::::::
W ::::::::::::::
Y :::::::::1::::
bits 12.4
11.1
9.9
8.7
Relative 7.4
Entropy 6.2
(23.6 bits) 5.0
3.7 * *
2.5 * * ***
1.2 ********** ***
0.0 --------------
Multilevel CAATAGCAGGATTT
consensus G CTG C
sequence
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 5 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- --------------
A/Chicken/TurkeyEdirne/0 2 1.90e-09 G CCATAGCAGGTTTT ATAGAG
A/Canada_goose/Alaska//4 5 4.78e-09 GGAG CAATAGCAGGATTT ATA
A/mallard/Washington/456 8 4.78e-09 TTTGGAG CAATAGCAGGATTT
A/wild_bird/Wisconsin/43 2 5.66e-09 G CAATAGCAGGATTC ATAGAA
A/avian/New_York/Sg00377 8 5.66e-09 TTTGGAG CAATAGCAGGATTC
A/chicken/Egypt/398220/2 8 5.66e-09 TTTGGAG CTATAGCAGGTTTT
A/chicken/Bangladesh/11r 8 1.10e-08 TTTGGAG CTATAGCAGGGTTT
A/chicken/Puebla/1458665 5 1.20e-08 GGAG CAATAGCCGGATTC ATA
A/duck/Bangladesh/5749/1 3 4.54e-08 CA CCATAGTAAYGADC AGGGG
A/wild_bird_feces/Cheons 5 5.98e-07 GAAA CAAGAGGACTATTT GGG
A/turkey/MN/40550/1987_H 5 9.56e-07 GAAA CAAGAGGACTGTTT GGA
A/duck/Korea/GJ54/2004|G 5 2.69e-06 GAAA CAAAAGGTCTATTT GGG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 5 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
A/Chicken/TurkeyEdirne/0 1.9e-09 1_[5]_6
A/Canada_goose/Alaska//4 4.8e-09 4_[5]_3
A/mallard/Washington/456 4.8e-09 7_[5]
A/wild_bird/Wisconsin/43 5.7e-09 1_[5]_6
A/avian/New_York/Sg00377 5.7e-09 7_[5]
A/chicken/Egypt/398220/2 5.7e-09 7_[5]
A/chicken/Bangladesh/11r 1.1e-08 7_[5]
A/chicken/Puebla/1458665 1.2e-08 4_[5]_3
A/duck/Bangladesh/5749/1 4.5e-08 2_[5]_5
A/wild_bird_feces/Cheons 6e-07 4_[5]_3
A/turkey/MN/40550/1987_H 9.6e-07 4_[5]_3
A/duck/Korea/GJ54/2004|G 2.7e-06 4_[5]_3
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 5 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF 5 width=14 seqs=12
A/Chicken/TurkeyEdirne/0 ( 2) CCATAGCAGGTTTT 1
A/Canada_goose/Alaska//4 ( 5) CAATAGCAGGATTT 1
A/mallard/Washington/456 ( 8) CAATAGCAGGATTT 1
A/wild_bird/Wisconsin/43 ( 2) CAATAGCAGGATTC 1
A/avian/New_York/Sg00377 ( 8) CAATAGCAGGATTC 1
A/chicken/Egypt/398220/2 ( 8) CTATAGCAGGTTTT 1
A/chicken/Bangladesh/11r ( 8) CTATAGCAGGGTTT 1
A/chicken/Puebla/1458665 ( 5) CAATAGCCGGATTC 1
A/duck/Bangladesh/5749/1 ( 3) CCATAGTAAYGADC 1
A/wild_bird_feces/Cheons ( 5) CAAGAGGACTATTT 1
A/turkey/MN/40550/1987_H ( 5) CAAGAGGACTGTTT 1
A/duck/Korea/GJ54/2004|G ( 5) CAAAAGGTCTATTT 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 5 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 14 n= 2024 bayes= 8.98014 E= 8.3e-010
-651 396 86 340 298 -767 231 401 130 410 306 140 263 270 70 389 -504 373 -26 110
43 106 151 393 360 -455 278 435 220 486 375 250 410 376 132 711 14 598 85 189
98 -441 91 317 287 -554 215 351 148 408 285 160 320 290 58 604 -449 507 27 127
-228 -392 163 357 309 -117 274 404 213 417 341 307 417 383 120 714 249 528 42 152
98 -441 91 317 287 -554 215 351 148 408 285 160 320 290 58 604 -449 507 27 127
-557 -578 269 419 263 151 306 299 269 336 245 321 344 337 161 525 -538 368 81 175
-393 330 123 315 276 -52 231 336 137 384 277 241 407 332 68 665 -55 496 6 122
67 -43 230 487 448 -413 349 526 317 581 468 294 398 436 210 762 -126 692 169 270
-244 156 218 390 290 101 284 341 228 385 292 300 411 358 137 657 -381 485 61 164
-469 -485 325 472 396 112 371 373 318 414 311 390 397 404 201 615 21 458 143 701
23 -372 130 350 307 -57 248 367 170 422 317 244 415 353 94 689 31 539 36 144
-264 -405 206 397 360 -558 326 499 295 469 418 378 412 440 183 768 274 571 95 201
-553 -454 632 449 357 -627 355 498 321 461 418 418 387 454 193 762 276 552 96 211
-473 221 124 312 300 -568 248 427 192 414 323 271 368 347 93 670 238 511 31 151
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 5 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 14 nsites= 12 E= 8.3e-010
0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.666667 0.166667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.166667 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.083333 0.000000 0.000000 0.000000 0.000000 0.166667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.666667 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.083333 0.000000 0.000000 0.000000
0.833333 0.083333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.083333 0.000000 0.000000 0.000000
0.083333 0.250000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.083333
0.583333 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.166667 0.000000 0.000000 0.000000
0.083333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.916667 0.000000 0.000000 0.000000
0.000000 0.000000 0.083333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.916667 0.000000 0.000000 0.000000
0.000000 0.333333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 5 regular expression
--------------------------------------------------------------------------------
CAATAG[CG]A[GC][GT][AG]TT[TC]
--------------------------------------------------------------------------------
Time 58.49 secs.
********************************************************************************
********************************************************************************
MOTIF 6 width = 21 sites = 4 llr = 106 E-value = 2.1e-004
********************************************************************************
--------------------------------------------------------------------------------
Motif 6 Description
--------------------------------------------------------------------------------
Simplified A ::a::::::a:a:a:::8::a
pos.-specific C :a:::3:::::::::::3:::
probability D :::::::::::::::::::::
matrix E :::::::::::::::::::::
F :::::::::::::::::::::
G a::aa3::::::a:aaa:aa:
H :::::::::::::::::::::
I :::::::::::::::::::::
K :::::::::::::::::::::
L :::::::::::::::::::::
M :::::::::::::::::::::
N :::::::::::::::::::::
P :::::::::::::::::::::
Q :::::::::::::::::::::
R :::::::::::::::::::::
S :::::::::::::::::::::
T :::::5aaa:a::::::::::
V :::::::::::::::::::::
W :::::::::::::::::::::
Y :::::::::::::::::::::
bits 12.4
11.1
9.9
8.7
Relative 7.4
Entropy 6.2
(38.2 bits) 5.0
3.7 *
2.5 * *** *
1.2 *********************
0.0 ---------------------
Multilevel GCAGGTTTTATAGAGGGAGGA
consensus C C
sequence G
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 6 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- ---------------------
A/chicken/Indonesia/SmiW 1 5.44e-12 . GCAGGTTTTATAGAGGGAGGA
A/chicken/Egypt/10117/20 1 6.47e-12 . GCAGGTTTTATAGAGGGCGGA
A/turkey/Italy/1980|GQ24 1 7.65e-12 . GCAGGCTTTATAGAGGGAGGA
A/chicken/Egypt/398214/2 1 2.63e-11 . GCAGGGTTTATAGAGGGAGGA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 6 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
A/chicken/Indonesia/SmiW 5.4e-12 [6]
A/chicken/Egypt/10117/20 6.5e-12 [6]
A/turkey/Italy/1980|GQ24 7.6e-12 [6]
A/chicken/Egypt/398214/2 2.6e-11 [6]
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 6 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF 6 width=21 seqs=4
A/chicken/Indonesia/SmiW ( 1) GCAGGTTTTATAGAGGGAGGA 1
A/chicken/Egypt/10117/20 ( 1) GCAGGTTTTATAGAGGGCGGA 1
A/turkey/Italy/1980|GQ24 ( 1) GCAGGCTTTATAGAGGGAGGA 1
A/chicken/Egypt/398214/2 ( 1) GCAGGGTTTATAGAGGGAGGA 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 6 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 21 n= 253 bayes= 5.96 E= 2.1e-004
-462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
-639 396 94 349 308 -756 240 412 140 420 315 150 272 279 79 401 -494 386 -17 121
73 -256 279 533 480 -384 392 565 359 613 494 341 456 479 249 787 -278 716 202 312
-462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
-462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
-292 122 347 562 501 -98 460 615 424 631 526 464 546 559 300 849 176 692 212 358
-458 -371 302 494 448 -550 414 590 392 561 497 458 466 520 270 831 272 643 180 300
-458 -371 302 494 448 -550 414 590 392 561 497 458 466 520 270 831 272 643 180 300
-458 -371 302 494 448 -550 414 590 392 561 497 458 466 520 270 831 272 643 180 300
73 -256 279 533 480 -384 392 565 359 613 494 341 456 479 249 787 -278 716 202 312
-458 -371 302 494 448 -550 414 590 392 561 497 458 466 520 270 831 272 643 180 300
73 -256 279 533 480 -384 392 565 359 613 494 341 456 479 249 787 -278 716 202 312
-462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
73 -256 279 533 480 -384 392 565 359 613 494 341 456 479 249 787 -278 716 202 312
-462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
-462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
-462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
55 34 281 536 499 -365 403 587 369 634 518 351 466 491 261 809 -257 740 218 326
-462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
-462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
73 -256 279 533 480 -384 392 565 359 613 494 341 456 479 249 787 -278 716 202 312
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 6 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 21 nsites= 4 E= 2.1e-004
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.250000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.750000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 6 regular expression
--------------------------------------------------------------------------------
GCAGG[TCG]TTTATAGAGGG[AC]GGA
--------------------------------------------------------------------------------
Time 59.26 secs.
********************************************************************************
********************************************************************************
MOTIF 7 width = 17 sites = 4 llr = 97 E-value = 6.2e-002
********************************************************************************
--------------------------------------------------------------------------------
Motif 7 Description
--------------------------------------------------------------------------------
Simplified A :a::8::5:::::a:::
pos.-specific C :::::8:::::::::a:
probability D :::::::::::::::::
matrix E :::::::::::::::::
F :::::::::::::::::
G a:aa:::5:::aa:a::
H :::::::::::::::::
I :::::::::::::::::
K :::::::::::::::::
L :::::::::::::::::
M :::::::::::::::::
N :::::::::::::::::
P :::::::::::::::::
Q :::::::::::::::::
R :::::::::::::::::
S :::::::::::::::::
T ::::33a:aaa:::::a
V :::::::::::::::::
W :::::::::::::::::
Y :::::::::::::::::
bits 12.4
11.1
9.9
8.7
Relative 7.4
Entropy 6.2
(34.9 bits) 5.0
3.7 *
2.5 ** *** **
1.2 ******* *********
0.0 -----------------
Multilevel GAGGACTGTTTGGAGCT
consensus TT A
sequence
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 7 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- -----------------
A/common_magpie/HongKong 5 1.62e-11 AAAA GAGGACTGTTTGGAGCT
A/Chicken/TurkeyMus/09rs 5 3.22e-11 AAGA GAGGACTATTTGGAGCT
A/ck/Indonesia/091/10 5 4.14e-11 AAGA GAGGTCTATTTGGAGCT
A/chicken/Bangladesh/11r 5 6.12e-10 AAAA GAGGATTGTTTGGAGCT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 7 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
A/common_magpie/HongKong 1.6e-11 4_[7]
A/Chicken/TurkeyMus/09rs 3.2e-11 4_[7]
A/ck/Indonesia/091/10 4.1e-11 4_[7]
A/chicken/Bangladesh/11r 6.1e-10 4_[7]
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 7 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF 7 width=17 seqs=4
A/common_magpie/HongKong ( 5) GAGGACTGTTTGGAGCT 1
A/Chicken/TurkeyMus/09rs ( 5) GAGGACTATTTGGAGCT 1
A/ck/Indonesia/091/10 ( 5) GAGGTCTATTTGGAGCT 1
A/chicken/Bangladesh/11r ( 5) GAGGATTGTTTGGAGCT 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 7 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 17 n= 1265 bayes= 8.30035 E= 6.2e-002
-462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
73 -256 279 533 480 -384 392 565 359 613 494 341 456 479 249 787 -278 716 202 312
-462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
-462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
48 -241 309 566 497 -365 422 588 396 632 516 380 496 519 279 809 -13 731 215 332
-593 393 110 361 324 -706 253 435 162 441 333 175 296 301 93 459 -298 429 0 142
-458 -371 302 494 448 -550 414 590 392 561 497 458 466 520 270 831 272 643 180 300
-44 -306 340 542 425 57 409 492 371 539 433 413 506 491 259 761 -280 630 175 291
-458 -371 302 494 448 -550 414 590 392 561 497 458 466 520 270 831 272 643 180 300
-458 -371 302 494 448 -550 414 590 392 561 497 458 466 520 270 831 272 643 180 300
-458 -371 302 494 448 -550 414 590 392 561 497 458 466 520 270 831 272 643 180 300
-462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
-462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
73 -256 279 533 480 -384 392 565 359 613 494 341 456 479 249 787 -278 716 202 312
-462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
-639 396 94 349 308 -756 240 412 140 420 315 150 272 279 79 401 -494 386 -17 121
-458 -371 302 494 448 -550 414 590 392 561 497 458 466 520 270 831 272 643 180 300
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 7 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 17 nsites= 4 E= 6.2e-002
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.750000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000
0.000000 0.750000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
0.500000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 7 regular expression
--------------------------------------------------------------------------------
GAGG[AT][CT]T[GA]TTTGGAGCT
--------------------------------------------------------------------------------
Time 59.96 secs.
********************************************************************************
********************************************************************************
MOTIF 8 width = 11 sites = 5 llr = 88 E-value = 1.2e+000
********************************************************************************
--------------------------------------------------------------------------------
Motif 8 Description
--------------------------------------------------------------------------------
Simplified A ::::2:a::::
pos.-specific C :8:::::a:a:
probability D :::::::::::
matrix E :::::::::::
F :::::::::::
G a:aa8:::a::
H :::::::::::
I :::::::::::
K :::::::::::
L :::::::::::
M :::::::::::
N :::::::::::
P :::::::::::
Q :::::::::::
R :::::::::::
S :::::::::::
T :2:::a::::a
V :::::::::::
W :::::::::::
Y :::::::::::
bits 12.4
11.1
9.9
8.7
Relative 7.4
Entropy 6.2
(25.4 bits) 5.0
3.7 * * *
2.5 * * * **
1.2 ***********
0.0 -----------
Multilevel GCGGGTACGCT
consensus T A
sequence
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 8 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- -----------
A/chicken/Vietnam/5/2010 5 8.62e-09 GGAA GCGGGTACGCT GCAGAC
A/chicken/Vietnam/4/2010 2 8.62e-09 A GCGGGTACGCT GCAGACAAA
A/duck/Vietnam/1/2010 11 8.62e-09 GAGCAGGGAA GCGGGTACGCT
A/duck/Vietnam/3/2010 8 3.40e-08 CAGGGAA GCGGATACGCT GCA
A/chicken/Egypt/11VIR445 11 1.63e-07 GAGCAGGGGA GTGGGTACGCT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 8 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
A/chicken/Vietnam/5/2010 8.6e-09 4_[8]_6
A/chicken/Vietnam/4/2010 8.6e-09 1_[8]_9
A/duck/Vietnam/1/2010 8.6e-09 10_[8]
A/duck/Vietnam/3/2010 3.4e-08 7_[8]_3
A/chicken/Egypt/11VIR445 1.6e-07 10_[8]
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 8 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF 8 width=11 seqs=5
A/chicken/Vietnam/5/2010 ( 5) GCGGGTACGCT 1
A/chicken/Vietnam/4/2010 ( 2) GCGGGTACGCT 1
A/duck/Vietnam/1/2010 ( 11) GCGGGTACGCT 1
A/duck/Vietnam/3/2010 ( 8) GCGGATACGCT 1
A/chicken/Egypt/11VIR445 ( 11) GTGGGTACGCT 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 8 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 11 n= 2783 bayes= 9.36986 E= 1.2e+000
-474 -500 350 502 339 144 383 380 351 412 326 404 418 417 241 608 -456 451 154 252
-614 394 99 353 313 -730 244 420 147 427 321 160 282 287 84 430 -344 405 -12 127
-474 -500 350 502 339 144 383 380 351 412 326 404 418 417 241 608 -456 451 154 252
-474 -500 350 502 339 144 383 380 351 412 326 404 418 417 241 608 -456 451 154 252
-292 -458 365 520 356 134 397 404 368 433 351 422 440 438 257 646 -413 486 166 265
-486 -396 271 458 420 -574 386 560 360 530 468 430 440 490 240 803 278 613 156 272
78 -274 255 506 459 -402 370 541 333 590 472 318 437 455 226 768 -297 695 183 290
-641 396 93 347 307 -758 238 410 138 418 314 148 270 277 77 399 -496 383 -19 119
-474 -500 350 502 339 144 383 380 351 412 326 404 418 417 241 608 -456 451 154 252
-641 396 93 347 307 -758 238 410 138 418 314 148 270 277 77 399 -496 383 -19 119
-486 -396 271 458 420 -574 386 560 360 530 468 430 440 490 240 803 278 613 156 272
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 8 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 11 nsites= 5 E= 1.2e+000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.800000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.200000 0.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 8 regular expression
--------------------------------------------------------------------------------
G[CT]GG[GA]TACGCT
--------------------------------------------------------------------------------
Time 60.70 secs.
********************************************************************************
********************************************************************************
MOTIF 9 width = 21 sites = 11 llr = 162 E-value = 8.0e-003
********************************************************************************
--------------------------------------------------------------------------------
Motif 9 Description
--------------------------------------------------------------------------------
Simplified A :91a47a:aa:9aa9a92a:a
pos.-specific C :::::1:::::::::::::::
probability D :::::::::::::::::::::
matrix E :::::::::::::::::::::
F :::::::::::::::::::::
G a19:62:a::a1::1:18:a:
H :::::::::::::::::::::
I :::::::::::::::::::::
K :::::::::::::::::::::
L :::::::::::::::::::::
M :::::::::::::::::::::
N :::::::::::::::::::::
P :::::::::::::::::::::
Q :::::::::::::::::::::
R :::::::::::::::::::::
S :::::::::::::::::::::
T :::::::::::::::::::::
V :::::::::::::::::::::
W :::::::::::::::::::::
Y :::::::::::::::::::::
bits 12.4
11.1
9.9
8.7
Relative 7.4
Entropy 6.2
(21.3 bits) 5.0
3.7
2.5
1.2 **** ***************
0.0 ---------------------
Multilevel GAGAGAAGAAGAAAAAAGAGA
consensus A
sequence
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 9 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- ---------------------
A/Egypt/9174NAMRU3/2009 1 3.52e-08 . GAGAGAAGAAGAAAAAAGAGA
A/chicken/WestJava/SmiSu 1 4.74e-08 . GAGAGCAGAAGAAAAAAGAGA
A/Egypt/N07460/2012 1 9.07e-08 . GAGAAAAGAAGAAAAAAGAGA
A/chicken/Egypt/1123AL/2 1 1.20e-07 . GAGAGGAGAAGAAAAAAGAGA
A/duck/Egypt/1130AG/2011 1 2.11e-07 . GAGAGAAGAAGGAAAAAGAGA
A/chicken/Egypt/10259SF/ 1 2.11e-07 . GAGAGAAGAAGAAAAAGGAGA
A/chicken/Egypt/1117AF/2 1 3.30e-07 . GAGAGAAGAAGAAAAAAAAGA
A/Egypt/N6774/2011 1 5.02e-07 . GGGAAAAGAAGAAAAAAGAGA
A/chicken/Egypt/1090/201 1 6.98e-07 . GAGAGGAGAAGAAAGAAGAGA
A/chicken/Egypt/111945V/ 1 8.06e-07 . GAGAAAAGAAGAAAAAAAAGA
A/quail/Egypt/1171SG/201 1 1.34e-06 . GAAAAAAGAAGAAAAAAGAGA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 9 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
A/Egypt/9174NAMRU3/2009 3.5e-08 [9]
A/chicken/WestJava/SmiSu 4.7e-08 [9]
A/Egypt/N07460/2012 9.1e-08 [9]
A/chicken/Egypt/1123AL/2 1.2e-07 [9]
A/duck/Egypt/1130AG/2011 2.1e-07 [9]
A/chicken/Egypt/10259SF/ 2.1e-07 [9]
A/chicken/Egypt/1117AF/2 3.3e-07 [9]
A/Egypt/N6774/2011 5e-07 [9]
A/chicken/Egypt/1090/201 7e-07 [9]
A/chicken/Egypt/111945V/ 8.1e-07 [9]
A/quail/Egypt/1171SG/201 1.3e-06 [9]
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 9 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF 9 width=21 seqs=11
A/Egypt/9174NAMRU3/2009 ( 1) GAGAGAAGAAGAAAAAAGAGA 1
A/chicken/WestJava/SmiSu ( 1) GAGAGCAGAAGAAAAAAGAGA 1
A/Egypt/N07460/2012 ( 1) GAGAAAAGAAGAAAAAAGAGA 1
A/chicken/Egypt/1123AL/2 ( 1) GAGAGGAGAAGAAAAAAGAGA 1
A/duck/Egypt/1130AG/2011 ( 1) GAGAGAAGAAGGAAAAAGAGA 1
A/chicken/Egypt/10259SF/ ( 1) GAGAGAAGAAGAAAAAGGAGA 1
A/chicken/Egypt/1117AF/2 ( 1) GAGAGAAGAAGAAAAAAAAGA 1
A/Egypt/N6774/2011 ( 1) GGGAAAAGAAGAAAAAAGAGA 1
A/chicken/Egypt/1090/201 ( 1) GAGAGGAGAAGAAAGAAGAGA 1
A/chicken/Egypt/111945V/ ( 1) GAGAAAAGAAGAAAAAAAAGA 1
A/quail/Egypt/1171SG/201 ( 1) GAAAAAAGAAGAAAAAAGAGA 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 9 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 21 n= 253 bayes= -2.07973 E= 8.0e-003
-545 -567 281 432 275 150 317 311 282 347 257 333 355 349 173 537 -526 381 92 187
76 -302 209 459 418 -229 327 493 288 549 436 281 401 416 185 742 -324 660 142 244
-341 -504 342 495 327 140 372 373 344 401 322 397 407 409 233 607 -458 447 143 240
96 -416 114 344 312 -532 236 379 174 435 313 182 337 313 82 628 -427 535 49 150
-65 -418 205 379 284 93 275 331 213 380 282 289 408 352 124 653 -382 481 51 155
56 -16 216 469 430 -157 336 506 298 561 449 288 409 426 195 754 -314 673 153 254
96 -416 114 344 312 -532 236 379 174 435 313 182 337 313 82 628 -427 535 49 150
-545 -567 281 432 275 150 317 311 282 347 257 333 355 349 173 537 -526 381 92 187
96 -416 114 344 312 -532 236 379 174 435 313 182 337 313 82 628 -427 535 49 150
96 -416 114 344 312 -532 236 379 174 435 313 182 337 313 82 628 -427 535 49 150
-545 -567 281 432 275 150 317 311 282 347 257 333 355 349 173 537 -526 381 92 187
76 -302 209 459 418 -229 327 493 288 549 436 281 401 416 185 742 -324 660 142 244
96 -416 114 344 312 -532 236 379 174 435 313 182 337 313 82 628 -427 535 49 150
96 -416 114 344 312 -532 236 379 174 435 313 182 337 313 82 628 -427 535 49 150
76 -302 209 459 418 -229 327 493 288 549 436 281 401 416 185 742 -324 660 142 244
96 -416 114 344 312 -532 236 379 174 435 313 182 337 313 82 628 -427 535 49 150
76 -302 209 459 418 -229 327 493 288 549 436 281 401 416 185 742 -324 660 142 244
-247 -487 327 482 321 134 361 367 330 397 316 385 407 401 221 615 -444 453 131 230
96 -416 114 344 312 -532 236 379 174 435 313 182 337 313 82 628 -427 535 49 150
-545 -567 281 432 275 150 317 311 282 347 257 333 355 349 173 537 -526 381 92 187
96 -416 114 344 312 -532 236 379 174 435 313 182 337 313 82 628 -427 535 49 150
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 9 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 21 nsites= 11 E= 8.0e-003
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.909091 0.000000 0.000000 0.000000 0.000000 0.090909 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.090909 0.000000 0.000000 0.000000 0.000000 0.909091 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.363636 0.000000 0.000000 0.000000 0.000000 0.636364 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.727273 0.090909 0.000000 0.000000 0.000000 0.181818 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.909091 0.000000 0.000000 0.000000 0.000000 0.090909 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.909091 0.000000 0.000000 0.000000 0.000000 0.090909 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.909091 0.000000 0.000000 0.000000 0.000000 0.090909 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.181818 0.000000 0.000000 0.000000 0.000000 0.818182 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 9 regular expression
--------------------------------------------------------------------------------
GAGA[GA]AAGAAGAAAAAAGAGA
--------------------------------------------------------------------------------
Time 61.66 secs.
********************************************************************************
********************************************************************************
MOTIF 10 width = 15 sites = 3 llr = 65 E-value = 5.1e+001
********************************************************************************
--------------------------------------------------------------------------------
Motif 10 Description
--------------------------------------------------------------------------------
Simplified A :::::::a:::7:a:
pos.-specific C ::::::::::::::a
probability D :::::::::::::::
matrix E :::::::::::::::
F :::::::::::::::
G aa::aa:::aa3:::
H :::::::::::::::
I :::::::::::::::
K :::::::::::::::
L :::::::::::::::
M :::::::::::::::
N :::::::::::::::
P :::::::::::::::
Q :::::::::::::::
R :::::::::::::::
S :::::::::::::::
T ::aa::a:a:::a::
V :::::::::::::::
W :::::::::::::::
Y :::::::::::::::
bits 12.4
11.1
9.9
8.7
Relative 7.4
Entropy 6.2
(31.2 bits) 5.0
3.7 *
2.5 ** * * * *
1.2 *********** ***
0.0 ---------------
Multilevel GGTTGGTATGGATAC
consensus G
sequence
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 10 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- ---------------
A/chicken/Anhui/T5/2006 1 6.50e-10 . GGTTGGTATGGATAC CATCAT
A/chicken/Guiyang/821/20 7 6.50e-10 GTAGAT GGTTGGTATGGATAC
A/chicken/Bangladesh/11V 7 1.21e-09 GTAGAT GGTTGGTATGGGTAC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 10 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
A/chicken/Anhui/T5/2006 6.5e-10 [10]_6
A/chicken/Guiyang/821/20 6.5e-10 6_[10]
A/chicken/Bangladesh/11V 1.2e-09 6_[10]
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 10 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF 10 width=15 seqs=3
A/chicken/Anhui/T5/2006 ( 1) GGTTGGTATGGATAC 1
A/chicken/Guiyang/821/20 ( 7) GGTTGGTATGGATAC 1
A/chicken/Bangladesh/11V ( 7) GGTTGGTATGGGTAC 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 10 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 15 n= 1771 bayes= 8.86125 E= 5.1e+001
-450 -477 373 526 362 141 405 405 375 437 349 427 440 442 263 632 -430 476 174 275
-450 -477 373 526 362 141 405 405 375 437 349 427 440 442 263 632 -430 476 174 275
-429 -346 336 539 479 -521 446 622 430 598 526 486 497 553 303 861 262 674 206 334
-429 -346 336 539 479 -521 446 622 430 598 526 486 497 553 303 861 262 674 206 334
-450 -477 373 526 362 141 405 405 375 437 349 427 440 442 263 632 -430 476 174 275
-450 -477 373 526 362 141 405 405 375 437 349 427 440 442 263 632 -430 476 174 275
-429 -346 336 539 479 -521 446 622 430 598 526 486 497 553 303 861 262 674 206 334
67 -239 308 567 502 -366 417 591 390 637 517 367 485 508 275 804 -258 737 221 337
-429 -346 336 539 479 -521 446 622 430 598 526 486 497 553 303 861 262 674 206 334
-450 -477 373 526 362 141 405 405 375 437 349 427 440 442 263 632 -430 476 174 275
-450 -477 373 526 362 141 405 405 375 437 349 427 440 442 263 632 -430 476 174 275
31 -240 343 583 496 -86 438 574 411 626 512 409 518 531 291 812 -243 725 221 340
-429 -346 336 539 479 -521 446 622 430 598 526 486 497 553 303 861 262 674 206 334
67 -239 308 567 502 -366 417 591 390 637 517 367 485 508 275 804 -258 737 221 337
-636 396 96 351 311 -752 242 415 143 423 318 152 274 281 81 405 -492 391 -15 125
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 10 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 15 nsites= 3 E= 5.1e+001
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.666667 0.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 10 regular expression
--------------------------------------------------------------------------------
GGTTGGTATGG[AG]TAC
--------------------------------------------------------------------------------
Time 62.43 secs.
********************************************************************************
********************************************************************************
SUMMARY OF MOTIFS
********************************************************************************
--------------------------------------------------------------------------------
Combined block diagrams: non-overlapping sites with p-value < 0.0001
--------------------------------------------------------------------------------
SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
A/chicken/Bangladesh/830 1.22e-03 [2(6.62e-06)]
A/chicken/Egypt/39825/20 4.13e-03 6_[4(4.39e-07)]
A/ck/Indonesia/072/10 3.16e-02 [2(2.31e-05)]
A/duck/Bangladesh/5749/1 2.68e-07 2_[5(4.54e-08)]_5
A/mallard/Crimea/245/200 3.86e-09 [1(6.48e-11)]
A/environment/Bangladesh 1.25e-03 [4(4.39e-07)]_6
A/chicken/Egypt/111945V/ 1.66e-03 [9(8.06e-07)]
A/avian/New_York/Sg00372 7.47e-04 [3(3.23e-09)]_6
A/chicken/Egypt/1117AF/2 1.30e-03 [9(3.30e-07)]
A/wild_bird_feces/Cheons 1.32e-02 4_[5(5.98e-07)]_3
A/chicken/India/241272/2 8.88e-03 [2(5.95e-06)]
A/duck/Jiangxi/80/2005 2.00e-03 [2(2.08e-07)]
A/chicken/Inhu/BPPVRII/2 5.07e-03 [2(1.32e-06)]
A/duck/Guangxi/668/2004 3.93e-03 [2(1.67e-06)]
A/whooper_swan/Hokkaido/ 5.48e-13 1_[7(1.62e-11)]_3
A/duck/Vietnam/1/2010 8.68e-04 10_[8(8.62e-09)]
A/avian/New_York/Sg00387 1.90e-04 3_[3(3.23e-09)]_3
A/chicken/Cambodia/LC/20 3.04e-01 21
A/mallard/Maryland/786/2 2.27e-09 4_[5(5.66e-09)]_3
A/chicken/Egypt/128s/201 4.88e-08 1_[3(4.76e-09)]_5
A/guinea_fowl/Yangon/834 2.87e-02 21
A/chicken/WestJava/SmiAc 1.07e-02 [2(1.27e-05)]
A/Indonesia/625/2006 1.65e-02 3_[4(1.47e-06)]_3
A/Egypt/N07460/2012 5.29e-04 [9(9.07e-08)]
A/duck/Victoria/26/1981| 1.14e-09 [1(1.29e-11)]
A/duck/Viet_Nam/TG2401/2 9.09e-03 [2(6.33e-05)]
A/chicken/Egypt/398252/2 1.21e-08 1_[5(5.66e-09)]_6
A/environment/Maryland/1 2.37e-08 [1(3.01e-11)]
A/duck/New_Zealand/41/19 3.43e-08 [1(6.33e-10)]
A/heron/Cambodia/TM068/2 3.39e-03 [4(3.75e-07)]_6
A/chicken/Egypt/10117/20 6.56e-08 [6(6.47e-12)]
A/VietNam/HN31413/2008 3.48e-04 [4(1.21e-07)]_6
A/chicken/Egypt/398214/2 4.80e-07 [6(2.63e-11)]
A/chicken/Egypt/39823/20 6.21e-02 21
A/chicken/Belgium/150VB/ 1.66e-08 [1(7.84e-10)]
A/goose/Fujian/bb/2003 3.18e-03 [2(3.89e-07)]
A/Vietnam/UT30259/2004 2.87e-03 [2(9.60e-06)]
A/duck/Yunnan/47/2006 1.19e-02 [2(3.27e-06)]
A/chicken/Egypt/10259SF/ 1.55e-03 [9(2.11e-07)]
A/bird/Turkey/Unye_ist06 4.33e-03 [2(1.45e-06)]
A/chicken/Bangladesh/11r 4.43e-08 4_[7(6.12e-10)]
A/chicken/Vietnam/NCVD19 2.96e-04 [2(7.67e-08)]
A/swan/England/AV3142149 8.58e-06 [1(5.93e-09)]
A/chicken/Ibaraki/17/200 3.23e-08 [1(5.83e-11)]
A/chicken/Nepal/354/2010 7.04e-03 3_[4(7.69e-07)]_3
A/duck/Vietnam/NCVD366/2 1.04e-02 [2(3.27e-06)]
A/duck/Korea/GJ54/2004|G 8.70e-02 4_[5(2.69e-06)]_3
A/muscovy_duck/Vietnam/L 5.49e-03 [2(1.20e-06)]
A/duck/Egypt/1130AG/2011 1.67e-03 [9(2.11e-07)]
A/ck/Indonesia/091/10 6.76e-08 4_[7(4.14e-11)]
A/duck/Vietnam/9/2010 8.80e-01 21
A/duck/Hokkaido/Vac3/200 6.46e-09 [1(1.27e-10)]
A/Thailand/WRAIR1720H/20 7.09e-03 [2(7.12e-07)]
A/chicken/Cambodia/022LC 5.25e-01 21
A/spurwinged_goose/Niger 1.87e-07 [1(2.89e-10)]
A/pigeon/Egypt/SHAH5803/ 7.97e-04 [4(4.39e-07)]_6
A/whooper_swan/Mongolia/ 1.74e-06 [1(5.15e-08)]
A/chicken/Shan/2626/2007 7.31e-04 [2(1.84e-08)]
A/chicken/Italy/367/97|A 5.38e-01 21
A/turkey/Italy/1325/2005 6.19e-01 21
A/chicken/Egypt/1158SF/2 1.23e-02 [2(2.10e-06)]
A/chicken/Egypt/398220/2 2.97e-05 7_[5(5.66e-09)]
A/condor/Guangdong/139/2 9.86e-03 [2(1.20e-06)]
A/chicken/Shandong/A1/20 1.24e-03 [2(3.10e-07)]
A/chicken/Egypt/11764s/2 2.76e-01 21
A/swine/NorthSumatra/UT6 3.58e-03 [2(4.76e-07)]
A/o.bill_stork/Thailand/ 2.66e-03 [2(2.53e-07)]
A/chicken/Texas/2983132/ 1.39e-06 [1(5.19e-10)]
A/chicken/Bangladesh/11V 1.24e-05 6_[10(1.21e-09)]
A/chicken/Ibaraki/15/200 2.90e-08 [1(1.65e-10)]
A/chicken/Shandong/A10/2 5.58e-03 [2(1.92e-06)]
A/duck/Vietnam/OIE1287/2 4.98e-04 [2(3.14e-08)]
A/duck/Vietnam/NCVD1161/ 1.05e-02 3_[4(4.39e-07)]_3
A/duck/Ireland/113/1983| 7.45e-01 21
A/chicken/EastKalimantan 5.24e-03 [2(4.76e-07)]
A/duck/Vietnam/3/2010 2.10e-03 7_[8(3.40e-08)]_3
A/Muscovy_duck/Ca_Mau/11 1.21e-02 [2(7.95e-07)]
A/chicken/Turkey/Misinli 9.81e-14 1_[7(3.22e-11)]_3
A/chicken/Italy/9097/199 6.24e-07 1_[5(3.92e-08)]_6
A/mallard/Washington/456 7.87e-06 7_[5(4.78e-09)]
A/duck/Iran/11VIR53161/2 6.67e-01 21
A/Muscovy_Duck/Vietnam/1 1.77e-04 [4(2.36e-07)]_6
A/duck/Hunan/149/2005 3.48e-06 [1(8.40e-09)]
A/Egypt/4822NAMRU3/2009 2.66e-02 [2(4.03e-05)]
A/duck/Vietnam/NCVD1463/ 3.24e-03 [2(1.92e-06)]
A/poultry/Egypt/398256/2 1.80e-03 [4(6.25e-07)]_6
A/turkey/Italy/1980|GQ24 2.83e-08 [6(7.65e-12)]
A/goose/Bangladesh/11VIR 2.97e-01 21
A/mallard/Washington/454 3.11e-09 [1(9.89e-12)]
A/chicken/Cambodia/013LC 3.57e-11 6_[3(1.22e-09)]
A/chicken/Banten/PdglKas 5.91e-03 [2(2.53e-07)]
A/chicken/Vietnam/NCVD03 3.60e-01 21
A/wigeon/Ohio/379/1988|C 1.02e-09 [1(2.82e-12)]
A/chicken/Magelang/BBVW6 1.62e-03 [2(7.67e-08)]
A/chicken/Lampung/BPPVRI 1.43e-02 [2(2.91e-06)]
A/chick/Pennsylvania/1/1 6.69e-05 [1(2.05e-08)]
A/chicken/Liaoning/A1/20 3.40e-03 [2(2.10e-06)]
A/wild_bird_feces/Cheons 1.67e-13 6_[3(4.15e-11)]
A/chicken/Sikkim/151466/ 9.38e-03 [2(6.62e-06)]
A/environment/ChangSha/2 1.87e-03 [2(5.95e-06)]
A/chicken/CentralJava/UT 2.46e-03 [2(2.60e-06)]
A/Vietnam/HN36250/2010 1.88e-02 [2(1.51e-05)]
A/chicken/Guiyang/821/20 1.39e-06 6_[10(6.50e-10)]
A/owstons_civet/VietNam/ 9.57e-04 [2(8.77e-07)]
A/chicken/Bangladesh/11r 3.28e-06 3_[3(8.33e-11)]_3
A/environment/New_York/1 3.29e-10 [1(7.24e-13)]
A/domestic_goose/Hong_Ko 1.50e-02 [2(8.76e-06)]
A/Hubei/1/2010 3.24e-03 [2(1.92e-06)]
A/Hunan/1/2009 1.76e-03 [2(3.93e-06)]
A/chicken/Egypt/1123AL/2 8.11e-04 [9(1.20e-07)]
A/wood_duck/MD/04623/200 8.07e-10 [1(9.89e-12)]
A/chicken/Shanxi/2/2006 2.04e-02 21
A/quail/Egypt/1171SG/201 1.40e-03 [9(1.34e-06)]
A/duck/France/080036/200 7.54e-09 [1(8.17e-11)]
A/chicken/Yangon/182/201 2.37e-03 [2(3.10e-07)]
A/chicken/Scotland/59|X0 5.00e-06 [1(5.46e-09)]
A/chicken/Sharkia/CAI41/ 1.52e-03 [2(1.04e-07)]
A/mallard/Sweden/21/2002 2.50e-09 [1(2.67e-11)]
A/environment/Bangladesh 7.64e-03 [2(5.95e-06)]
A/chicken/Hebei/A8/2009 2.47e-03 [2(2.60e-06)]
A/chicken/Egypt/11VIR445 1.66e-03 10_[8(1.63e-07)]
A/duck/Guangxi/13/2004 3.67e-03 [2(9.60e-06)]
A/duck/France/090043/200 4.42e-08 [1(2.89e-10)]
A/chicken/Denpasar/BBVD1 2.21e-02 [2(3.61e-06)]
A/Egypt/N6774/2011 6.32e-04 [9(5.02e-07)]
A/parrot/CA/6032/04|DQ25 7.46e-08 [1(1.65e-10)]
A/Cambodia/VN05103/2005 1.41e-01 21
A_GenBank/heron/Cambodia 2.73e-03 6_[4(3.75e-07)]
A/chicken/Bangladesh/11r 6.14e-05 7_[5(1.10e-08)]
A/chicken/Tabanan/BBVD14 1.77e-03 [2(2.08e-07)]
A/great_cormorant/Tibet/ 5.06e-05 [2(3.08e-09)]
A/Egypt/321NAMRU3/2007 5.79e-03 [2(6.23e-07)]
A/chicken/Egypt/10512AG/ 3.04e-02 [2(9.60e-06)]
AHAH5_[11734;11734] 4.21e-37 [1(3.05e-19)]
A/Egypt/9174NAMRU3/2009 5.33e-04 [9(3.52e-08)]
A/Indonesia/NIHRD12379/2 4.50e-03 [2(6.23e-07)]
A/chicken/Korea/ES/03 1.77e-02 [2(5.89e-05)]
A/avian/New_York/Sg00377 1.75e-05 7_[5(5.66e-09)]
A/chicken/Vietnam/NCVD09 2.29e-03 [2(4.40e-06)]
A/Chicken/TurkeyMus/09rs 5.71e-08 4_[7(3.22e-11)]
A/duck/Hong_Kong/312/197 6.18e-05 [3(8.33e-11)]_6
A/Vietnam/UT3030/2003 6.22e-04 [2(5.58e-08)]
A/crow/Bangladesh/11rs19 6.76e-02 21
A/duck/Primorie/2633/200 3.16e-05 [3(4.15e-11)]_6
A/Indonesia/UT3006/2005 7.23e-03 [2(3.89e-07)]
A/duck/Qalubia/CAI11/201 5.33e-03 [2(3.89e-07)]
A/green_winged_teal/Dela 2.40e-09 [1(5.44e-12)]
A/chicken/Anhui/T5/2006 2.35e-05 [10(6.50e-10)]_6
A/chicken/Puebla/8623607 9.01e-01 21
A/duck/Guangxi/951/2005 4.60e-03 [2(5.43e-06)]
A/chicken/Egypt/1219s/20 4.44e-11 4_[3(4.76e-09)]_2
A/chicken/WestJava/SmiSu 1.15e-03 [9(4.74e-08)]
A/chicken/Cambodia/TLC2/ 1.63e-05 3_[3(1.22e-09)]_3
A/duck/France/05056a/200 1.22e-08 [1(4.65e-10)]
A/Shandong/1/2009 2.38e-03 [2(2.34e-06)]
A/chicken/Vietnam/NCVD40 5.75e-03 [2(3.27e-06)]
A/chicken/Queretaro/7653 1.33e-02 3_[4(3.75e-07)]_3
A/environment/Bangladesh 2.15e-03 [4(3.75e-07)]_6
A/barn_swallow/Hong_Kong 1.05e-02 [2(2.31e-05)]
A/duck/Primorie/2621/200 9.31e-08 1_[3(1.97e-08)]_5
A/chicken/BacLieuVietnam 2.11e-03 3_[4(6.25e-07)]_3
A_DISC/Cambodia/V0401301 8.39e-03 [2(2.91e-06)]
A/bar_headed_goose/Mongo 9.64e-06 [1(2.05e-08)]
A/chicken/Egypt/113Q/201 1.22e-02 [2(1.92e-06)]
A/quail/Thanatpin/2283/2 4.14e-03 [2(6.62e-06)]
A/chicken/Egypt/125s/201 1.53e-11 4_[5(5.66e-09)]_3
A/duck/Hong_Kong/698/197 5.60e-09 [1(2.08e-11)]
A/chicken/Egypt/209573/2 8.03e-01 21
A/chicken/Indonesia/SmiW 3.08e-08 [6(5.44e-12)]
A/turkey/Egypt/091QNLQP/ 7.34e-05 [3(8.33e-11)]_6
A/duck/Egypt/1053/2010 2.54e-02 21
A/Egypt/2786NAMRU3/2006 8.02e-04 6_[4(6.25e-07)]
A/mallard/Netherlands/3/ 1.90e-06 3_[3(4.15e-11)]_3
A/chicken/Bangladesh/11r 3.27e-05 [3(8.33e-11)]_6
A/chicken/Liaoning/23/20 4.61e-03 [2(1.20e-06)]
A/unknown/NY/98996/01|AY 2.75e-09 [1(1.88e-11)]
A/tern/South_Africa/1961 5.03e-01 21
A/chicken/Nepal/T1P/12 2.79e-03 [2(7.12e-07)]
A/marabou_stork/Cambodia 2.36e-01 21
A/chicken/Cambodia/67F1/ 1.19e-02 [2(2.10e-06)]
A/gadwall/California/442 6.07e-10 [1(2.10e-12)]
A/chicken/TanseMyanmar/S 5.35e-03 3_[4(6.25e-07)]_3
A/duck/Cao_Bang/43/2007 5.78e-04 [2(5.46e-07)]
A/chicken/Miyazaki/T10/2 2.84e-03 [2(1.67e-06)]
A/whitefaced_whistling_d 7.41e-02 21
A/muscovy_duck/Vietnam/N 5.05e-03 [2(6.23e-07)]
A/Canada_goose/Alaska//4 2.31e-09 4_[5(4.78e-09)]_3
A/chicken/Bangladesh/967 2.96e-03 [2(7.12e-07)]
A/chicken/Egypt/11VIR445 6.80e-03 [2(1.92e-06)]
A/Hong_Kong/7032/2012 1.26e-02 3_[4(4.39e-07)]_3
A/chicken/Vietnam/945/20 5.75e-01 21
A/ostrich/South_Africa/A 1.76e-05 3_[3(7.90e-10)]_3
A/wild_bird/Wisconsin/43 1.40e-06 1_[5(5.66e-09)]_6
A/spurwinged_goose/Niger 2.31e-02 [2(1.16e-05)]
A/duck/Vietnam/NCVD1026/ 4.60e-03 [2(1.27e-05)]
A/tern/South_Africa/1959 1.00e-06 3_[3(4.15e-11)]_3
A/muscovy_duck/Jakarta/S 2.32e-03 [2(5.58e-08)]
A/goose/Germany/R3160/09 2.01e-09 [1(4.14e-11)]
A/turkey/Ontario/7732/19 7.44e-01 21
A/chicken/Egypt/1090/201 1.64e-03 [9(6.98e-07)]
A/mallard/Netherlands/2/ 5.96e-09 [1(5.83e-11)]
A/chicken/Vietnam/NCVD18 3.46e-03 [2(1.27e-05)]
A/chicken/Texas/1672804/ 1.67e-07 [1(3.63e-11)]
A/duck/Italy/775/2004|CY 1.24e-09 [1(9.22e-11)]
A/chicken/Bangladesh/FD( 2.17e-05 [3(4.15e-11)]_6
A/chicken/Vietnam/NCVD40 1.17e-02 [2(1.66e-05)]
A/swan/Hokkaido/67/1996| 1.62e-07 [1(2.49e-10)]
A/chicken/Bangladesh/152 9.67e-04 [2(1.20e-06)]
A/chicken/Bangladesh/11r 1.76e-01 21
A/chicken/Indonesia/Suka 2.79e-01 21
A/gull/Pennsylvania/4175 3.23e-07 [1(1.05e-09)]
A/turkey/England/N28/73| 2.35e-08 1_[3(2.10e-08)]_5
A/chicken/Badung/BBVD302 1.81e-03 [2(2.17e-07)]
A/chicken/Bangladesh/11r 2.34e-03 [3(7.12e-09)]_6
A/chicken/Yichang/lung1/ 8.73e-01 21
A/avian/Missouri/4655937 9.68e-09 [1(1.88e-11)]
A/turkey/TX/14082/1982_H 4.49e-09 [1(1.88e-11)]
A/Cambodia/W0526301/2012 1.11e-02 [2(1.92e-06)]
A/chicken/Vietnam/NCVD11 1.10e-02 3_[4(3.75e-07)]_3
A/duck/Egypt/SHZA6605/20 6.64e-02 21
A/chicken/Shandong/A5/20 8.69e-03 [2(7.33e-06)]
A/chicken/VA/40018/1984_ 1.38e-04 [1(8.00e-08)]
A/common_magpie/HongKong 3.92e-09 4_[7(1.62e-11)]
A/shearwater/Australia/7 5.83e-09 [1(6.48e-11)]
A/Chicken/TurkeyEdirne/0 2.06e-08 1_[5(1.90e-09)]_6
A/goose/Guiyang/337/2006 7.92e-03 [2(7.95e-07)]
A/chicken/Egypt/11VIR445 4.91e-01 21
A/environment/Thailand/I 3.12e-03 [2(4.76e-07)]
A/wild_bird_feces/Byeong 9.09e-06 3_[3(6.63e-10)]_3
A/duck/Vietnam/NCVD422/2 1.28e-02 [2(1.96e-05)]
A/chicken/Bhutan/4/10 9.80e-01 21
A/turkey/MN/40550/1987_H 5.51e-03 4_[5(9.56e-07)]_3
A/chicken/Egypt/1085/201 7.60e-03 [2(2.60e-06)]
A/duck/France/06436/2006 4.96e-08 [1(8.65e-10)]
A/HongKong/6841/2010 4.72e-01 21
A/chicken/WestBengal/239 6.43e-03 [2(1.45e-06)]
A/duck/Bac_Lieu/1213/200 1.71e-03 [2(9.16e-08)]
A/cinnamon_teal/Californ 2.44e-09 [1(1.49e-11)]
A/Muscovy_duck/France/07 1.85e-08 [1(1.05e-09)]
A/chicken/Vietnam/4/2010 6.85e-04 1_[8(8.62e-09)]_9
A/chicken/Vietnam/NCVD01 1.05e-02 [2(2.94e-05)]
A/chicken/Puebla/1458665 1.71e-08 4_[5(1.20e-08)]_3
A/Northern_shoveler/Utah 3.16e-10 [1(1.11e-12)]
A/tundra_swan/Alaska//48 1.72e-09 [1(1.29e-11)]
A/chicken/Sheny/0606/200 2.19e-03 [2(1.67e-06)]
A/turkey/England/N28/73| 7.65e-01 21
A/duck/Iran/VIR53161/201 9.31e-01 21
A/chicken/Yangon/1023/20 3.00e-02 [2(2.51e-05)]
A/chicken/Vietnam/5/2010 5.43e-04 4_[8(8.62e-09)]_6
A/chicken/Hebei/326/2005 4.20e-03 [2(1.32e-06)]
A/chicken/Bangladesh/150 3.10e-04 [2(3.10e-07)]
A/wild_bird/Minnesota/46 2.06e-09 [1(4.20e-12)]
A/chicken/India/81766/20 2.22e-03 [2(7.12e-07)]
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