# fasta35 -E 1 -H BOSS_DROME.fa wormpep190
FASTA searches a protein or DNA sequence data bank
version 35.04 Aug. 28, 2008
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: BOSS_DROME.fa
1>>>BOSS_DROME Protein bride of sevenless precursor. - 896 aa
Library: wormpep190 10449259 residues in 23771 sequences
10449259 residues in 23771 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6522+/-0.000443; mu= 12.7762+/- 0.026
mean_var=109.3856+/-23.016, 0's: 1 Z-trim: 2 B-trim: 0 in 0/59
Lambda= 0.122629
Algorithm: FASTA (3.5 Sept 2006) [optimized]
Parameters: BL50 matrix (15:-5) ktup: 2
join: 38, opt: 26, open/ext: -10/-2, width: 16
Scan time: 2.980
The best scores are: opt bits E(23771)
F35H10.10 CE24945 WBGene00018073 status:Confirmed (1404) 207 48.2 9.2e-05
>>F35H10.10 CE24945 WBGene00018073 status:Confirmed UniP (1404 aa)
initn: 94 init1: 94 opt: 207 Z-score: 196.5 bits: 48.2 E(): 9.2e-05
Smith-Waterman score: 275; 22.7% identity (52.3% similar) in 728 aa overlap (207-847:640-1330)
180 190 200 210 220 230
BOSS_D RAISIDNASLAENLLIQEVQFLQQCTTYSMGIFVDWELYKQLESVIKD---LEYNIWPIP
: : . . .: :: .. :. .. .:
F35H10 NQAGRNITIVPKSVFGYASALHGDSQESLKGYFSSGDTDASLVSVDSEHSALQRSFTALP
610 620 630 640 650 660
240 250 260 270 280
BOSS_D GTRAHLFPKVAHLLHQMPWGEKIASV-EIATETLEMYNEFMEAARQEHMCLM--------
..: . . . .::..: : :.. : :.: .. : . : .. .::
F35H10 SSRNQALA-LLKLLNRMQWQFVTAALSEQDPESLSLFRAFERLALDRGVCLAEVLNIGGS
670 680 690 700 710 720
290 300 310 320 330
BOSS_D ---HFKSDDNVYIMFGN-KLASHF----KENGTLFSVPTDRTDDEFLAD------LPNRA
...: :: :.:.. . :. . : :. .: .. : .: .:. .
F35H10 RLDNIRSTTNVTIVFSTARDAADYLIASKIRGNHVNVMMGEAHDWYLHAPNNKELFPGTV
730 740 750 760 770 780
340 350 360 370
BOSS_D FVLMENEI--DLSTAVELDATPTALDEILIGKSVLPSR---VLSFAGSII--------DL
: .: . :. .: .:: .: : : : . :: .:: ...: .:
F35H10 SVQPRNILYGDFREWLET-TTPLTLPE-LWYWSYIESRYGCALSQKSKVIYGKMCTGDEL
790 800 810 820 830 840
380 390 400 410 420 430
BOSS_D MNWLR-GSLSK--HCKRGEEHDLYVLESCFNFLNFIEDWRTSEYRQAHDTAEILSLLLMR
.: : ..: . .:: :. :....: .. : .. :. . . .::. : .
F35H10 LNIESLGRMTKAGYLSRGVERFLFAMDSVYKSLCPAQNGLCLEFYE-QGRRQILTQL--K
850 860 870 880 890 900
440 450 460 470 480 490
BOSS_D KLGTAMNFQMYQKKVLTLDKITGESRTELREIASQNFVTNVTTYYHYNRDNHTSLELKTK
: .: . ..:. : :... .: ::. ...:.. .: : . : : .
F35H10 KTSTEDDVEIYE----FLPDINNHFTYHL--IANWTLTTGLRMTNQYRNGNGVPTESKCQ
910 920 930 940 950
500 510 520
BOSS_D -----------FGQ------VFNCQYSAGDN-----RRYPFLFDGESV----MFWRIKMD
: : :: . :.. .: : : .:.. .: .:
F35H10 PPMCKCFLDGDFFQRPLDSFVFRPDEPEGSDQSSYIKRQP-AFGSEKIEYQSVFEHITTG
960 970 980 990 1000 1010
530 540 550 560 570 580
BOSS_D TWVATGLTAAILGLIATL-----AILVFIVVRISLGDVFEGNPTTSILLLLSLILVFCSF
: . ..:.::..: :.::...:.. : : .:: . .: ::...:..
F35H10 HWRDHPHNYVLLALITVLVVVAIAVLVLVLVKLYL-RVVKGNQSLGISLLIGIIIL----
1020 1030 1040 1050 1060 1070
590 600 610 620 630 640
BOSS_D VPYSIEYVGEQRNSHVTFEDAQTLNTLCAVRVFIMTLVYCFVFSLLLCRAVMLASIGSEG
:: . .:. . ...: .::.. : : . :.... .:..: . . :
F35H10 --YSTAFF-------FVFDPT---DSVCRLRVILHGLGYTICFGVMIAKATQLRNAETLG
1080 1090 1100 1110
650 660 670 680 690
BOSS_D -GFLSHVNGYIQAVICAFSVVAQVGMSVQLLVVMHVASETVSCENIY-----YGRWLWGL
: :.. . .. : : .:...:.. .. ... : :. .:. . .
F35H10 FGTAIHISFWNYWLLLFFIVGVQIALSISWFLEPFMSTIGVIDTNVQRMMCTMGKVEFVV
1120 1130 1140 1150 1160 1170
700 710 720 730 740 750
BOSS_D LAYDFALLCCVGALIPSIYRS-QRNYREGILIVIGSVLIMVIWVAWIALSLFGD-EWRDA
. .: .. .: . :. .:::.: .. ..:: . :::::.: : : :.::.
F35H10 SNFYVMILIFMALFISMLNRNIKRNYKETKWLLYSTVLCFFTWVAWITLYLVLDHEFRDT
1180 1190 1200 1210 1220 1230
760 770 780 790 800 810
BOSS_D AIPLGLQASGWAVLVGILI-PRTFLIVRGIERSDIA---QALPSLTSLAFAQNNQYSSEQ
.: . : : . ..:.:.:. :. .... . : .: . .:. :.: : .... :..
F35H10 VIVVELVACA-TILLGFLFGPKIYILL-SYEPVVVAFKRDPFPNHTDL-FEKDDDLPSQR
1240 1250 1260 1270 1280 1290
820 830 840 850 860
BOSS_D SVYECVNPAMRHCSQDEVNHQSPSEIPTL--PLRGGGPRRQQFFANLRQANANINPQRPP
. :.:: :... . .. : . :. . ::
F35H10 A----VSPASSTSSSSNRSSSGSSYTSSSKRPVNAVGPLPLNKNVEDQSPIFHTVMRKKT
1300 1310 1320 1330 1340 1350
870 880 890
BOSS_D PRPQQSPSRSSVSSLPPSPDHNKITRF
F35H10 KVRRSNSEHDTIMNVGIPMTSVPIIRSPSARDEKVHRVAISPPIRDYNSINH
1360 1370 1380 1390 1400
896 residues in 1 query sequences
10449259 residues in 23771 library sequences
Scomplib [35.04]
start: Wed Oct 22 20:59:06 2008 done: Wed Oct 22 20:59:09 2008
Total Scan time: 2.980 Total Display time: 0.030
Function used was FASTA [version 35.04 Aug. 28, 2008]