LOCUS NC_008536 2001 bp DNA linear BCT 21-JUL-2008
DEFINITION Solibacter usitatus Ellin6076, complete genome.
ACCESSION NC_008536 REGION: 1000..3000
VERSION NC_008536.1 GI:116619145
PROJECT GenomeProject:12638
KEYWORDS .
SOURCE Solibacter usitatus Ellin6076
ORGANISM Solibacter usitatus Ellin6076
Bacteria; Acidobacteria; Solibacteres; Solibacterales;
Solibacteraceae; Solibacter.
REFERENCE 1 (bases 1 to 2001)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Mikhailova,N., Janssen,P.H., Kuske,C.R. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Solibacter usitatus Ellin6076
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2001)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (24-OCT-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2001)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Mikhailova,N., Janssen,P.H., Kuske,C.R. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (06-OCT-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000473.
URL -- http://www.jgi.doe.gov
JGI Project ID: 3634513
Source DNA and bacteria available from Cheryl R. Kuske
(kuske@lanl.gov)
Contacts: Cheryl R. Kuske (kuske@lanl.gov)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2001
/organism="Solibacter usitatus Ellin6076"
/mol_type="genomic DNA"
/strain="Ellin6076"
/db_xref="taxon:234267"
gene <1..403
/locus_tag="Acid_0001"
/db_xref="GeneID:4431688"
CDS <1..403
/locus_tag="Acid_0001"
/note="KEGG: aba:Acid345_0001 chromosomal replication
initiator protein DnaA
TIGRFAM: chromosomal replication initiator protein DnaA
PFAM: Chromosomal replication initiator, DnaA C-terminal
domain; Chromosomal replication initiator, DnaA
SMART: AAA ATPase"
/codon_start=1
/transl_table=11
/product="chromosomal replication initiator protein DnaA"
/protein_id="YP_821302.1"
/db_xref="GI:116619146"
/db_xref="InterPro:IPR001957"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR013159"
/db_xref="InterPro:IPR013317"
/db_xref="GeneID:4431688"
/translation="MNYWDQIRHYLQSKVSADGYDNWLKSTAFVGQNGDTLYVSVPDR
ETRAWLETEYTQLIQGGIQALGLPVRHVSFEAEQSRPAAPAATIAVNANTEPDAAATV
LNPKFTFNSFVVGACNQFAHAAAKSVATNPSRSYNPLFLYGGVGMGKTHLMHAIGRQL
IDQFGSMRIIYTSSERFMNEMISCIRTERMQQFHQRYREADVLLIDDIQLLGNKERTQ
EEFFHTFNELHDHQKQIVISSDSPPKDIPGLLERLRSRFEWGLMADIQPPDLETKMAI
LDKKAEIEGVELPDDVRTFMASKTKSNVRELEGALVKLIAYSSLTGTPIHLQMAQQVL
KHLVHVQDRRVTMDSIQKAVAEKFSIKQSQLKEKSNTKKVVYPRQVAMYLVKELTNAS
LPEIGRAFGGKHHTTVIHSINKIEKDRQSDPELNRLLHSLMDSLQ"
gene 638..1756
/locus_tag="Acid_0002"
/db_xref="GeneID:4431689"
CDS 638..1756
/locus_tag="Acid_0002"
/EC_number="2.7.7.7"
/note="KEGG: aba:Acid345_0002 DNA polymerase III, beta
subunit
TIGRFAM: DNA polymerase III, beta subunit
PFAM: DNA polymerase III, beta chain"
/codon_start=1
/transl_table=11
/product="DNA polymerase III, beta subunit"
/protein_id="YP_821303.1"
/db_xref="GI:116619147"
/db_xref="InterPro:IPR001001"
/db_xref="GeneID:4431689"
/translation="MEFTVSKSDLVRELSLSQGVVEKKTTIPILSNVLLEAADDRITL
TATDLELGIRCSCPARVKKEGSGTVPARKLLDYMRLLPEGDVNMKFLDNHWASITSGR
SRTRIAGMSRESFPELPQMPEPIAQVPVKTLASMIARTSFAISMEESRFTLNGALLLM
RPEGLTMVATDGHRLAYVQAEPAESGSADKPFRALVPKKAMSELTKLSDDAGEGAMAI
VAGDDNHLFFQIGHRLLITRKLTGNFPDYERVLPKDHQFMAKLEKGEIRSAIERVAQF
ADERSRAIRVQFNSGEVRVFSSSVETGESEESVPAEYTGPDIEIGFNAQYLLDFLRAI
SQDHVAFELKDQKSAGELRPAGDAIADQYRYVVMPMRI"
gene 1782..>2001
/locus_tag="Acid_0003"
/db_xref="GeneID:4431690"
CDS 1782..>2001
/locus_tag="Acid_0003"
/EC_number="5.99.1.3"
/note="KEGG: aba:Acid345_0008 DNA gyrase, B subunit
TIGRFAM: DNA gyrase, B subunit
PFAM: DNA gyrase, subunit B domain protein; ATP-binding
region, ATPase domain protein domain protein; TOPRIM
domain protein; DNA topoisomerase, type IIA, subunit B,
region 2 domain protein
SMART: DNA topoisomerase II"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit B"
/protein_id="YP_821304.1"
/db_xref="GI:116619148"
/db_xref="InterPro:IPR000565"
/db_xref="InterPro:IPR001241"
/db_xref="InterPro:IPR002288"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR006171"
/db_xref="InterPro:IPR011557"
/db_xref="InterPro:IPR011558"
/db_xref="InterPro:IPR013506"
/db_xref="GeneID:4431690"
/translation="MPNEVNPVGGNGNVYDSSSIKVLEGLEAVRLRPAMYIGSTGEMG
LHHLVYEVVDNSVDEALAGYATHIEVTIHDDNSVTVEDDGRGIPVGIHEEEGVSAAQV
VMTKLHAGGKFDSNSYKVSGGLHGVGVSCVNALSEKLELEIWREGYTWTQEYSCGKPK
ADLVRAGKAGKRTGTRVTFKPDSTIMEVAVFNYDTLAQRLRELAFLNKGLKITLTDER
VDPEKVTPFEYQGGISEFIKHLNRGKSVLHEKPIHFEAEREMPEKGTITMEVALQYND
AYSENVFSFANNINTVDGGTHLSGFRSALTRTINAFGQKNGLFKDVKENLSGDDVREG
LTAVVSVKVPQPQFEGQTKGKLNSDIAGYMTQFVNDKLSEYFDKNSAVGRKIVGKAIE
ASRAREAARKARDLTRRKGALDSGGLPGKLADCQEKDPKLCELFLVEGESAGGTAKQG
RERRFQAILPLKGKILNVEKARYDKMLGHEEIRCMITALGTGIGKDDFDVAKLRYDKI
IIMTDADVDGSHIRTLLLTFFFRHMNELITRGKVYIAQPPLYRIKKGKSEKYIKDEKE
FTKEIMRRATENLTVEIHSNGDGKPKSSLEGQELRTFLLNLDEFQQIFHKVERRLRDS
RAVDVLTNVDLHVDNKAEFQVEANLKPVFEAMKAKGLNPQMKKDEEHSAWAVVFHDST
GAERSVGLQLAAQPEYRRFRALARTIAKFNEPPFVVVKNEHRDAQPDWVELLEYVKNE
GKKDASVQRYKGLGEMNAEQLADTTMNPEKRTLLEVRLEDAVQCEEIFSTLMGEDVES
RRKFIEENALDVKNLDV"
ORIGIN
1 ccgcgaactc gaaggcgccc tggttaaatt gatcgcgtac tcctccctca ccggaacgcc
61 gatccacctg cagatggcgc aacaggtcct gaagcacctg gtccacgtgc aggaccgccg
121 cgtcaccatg gattccatcc aaaaggccgt cgcggagaaa ttcagcatta agcagtccca
181 gctcaaggaa aagagcaata ccaagaaggt ggtctatccg cggcaggtgg caatgtacct
241 ggtcaaggag ctcaccaacg cgtcgctacc tgagatcggg cgcgctttcg gcggaaagca
301 tcacaccacc gtgatccact cgatcaacaa aatcgagaag gatcgccaga gcgaccctga
361 attgaacagg ttactacaca gcctaatgga ctcattacaa tgaccttcca ccgttttcca
421 caattgccct tgcaccgggc atggggaaat ctgtgtatat cgcatgacag cgttggtttt
481 gcgcaatttt ccgcgccgca atccgcagct tgacgtagca gaaagtggct gagtttagta
541 taatttagat agtcttcaac actttgcaca gggcctatga atacggttat ttatcaggcc
601 tatctataga gacagcaaag aactaggagc cgtgggcatg gaattcaccg tcagcaagag
661 cgatctggta cgtgagctga gtctctcgca gggtgtggtg gaaaaaaaga ccaccattcc
721 aatcctgtcg aacgtgctcc tggaggccgc ggacgatcgc attacgttga ctgcgaccga
781 cctggaactg ggcatccgct gttcttgccc ggcgcgcgtc aagaaagaag ggtccggcac
841 ggtgccggcg cgcaaactgc tcgattacat gcgtctgttg cccgaaggcg acgtgaacat
901 gaagttcctg gacaatcact gggccagtat caccagcgga cgttctcgca ccaggattgc
961 gggcatgtcg cgcgagagct tccccgaact gccgcagatg ccggagccga tcgcgcaggt
1021 gcccgtcaaa acgctggcct ccatgatcgc ccgtacgtcc ttcgccatct ccatggagga
1081 gtcgcgcttt acgctcaacg gcgcgctcct gctgatgcgc cccgaaggcc tcaccatggt
1141 cgccaccgat ggccaccgcc tcgcctacgt gcaggccgag cccgcggaga gcggcagcgc
1201 cgacaaaccc ttccgcgccc tcgtccccaa gaaggcgatg agcgaattga ccaagctcag
1261 cgatgatgcc ggcgaaggcg ccatggccat cgtcgccggt gatgacaatc acctgttctt
1321 ccaaattggc caccgcctgc tgatcacgcg aaagctcacc ggcaacttcc cggattacga
1381 gcgcgtcttg cccaaagatc accagttcat ggccaagctc gagaagggcg aaatccgctc
1441 ggcaatcgaa cgcgtggcgc agttcgccga tgaacggtcg cgcgccattc gggtgcaatt
1501 caacagcggc gaagtccgcg tcttcagttc cagcgtcgaa accggcgaga gcgaagagag
1561 cgttcccgcc gagtacacgg gtcccgatat cgagatcggt ttcaatgccc aatacctgct
1621 cgatttcctg cgtgcgattt ctcaggatca cgttgccttc gaattgaagg atcaaaaaag
1681 cgcgggcgaa ctccgtcccg ccggcgatgc catcgcggac cagtaccgct atgtagtcat
1741 gccgatgcgt atttgaagtt tagtcaaacc agtaaggaac tatgccaaac gaagtcaatc
1801 ccgtcggggg aaatggaaac gtctacgatt ccagcagtat caaagtcctg gaaggcctcg
1861 aagcagtgcg cctgcgccct gccatgtaca tcgggtctac aggcgagatg gggctgcacc
1921 atctggtcta tgaggtcgtc gataattccg tcgatgaagc tctagccggc tacgccaccc
1981 atatcgaggt gacgatccac g
//