##gff-version 3
##sequence-region Contig1 1 37450
#Contig1 reference Component 1 37450 . . . Name=Contig1
Contig1 confirmed transcript 1001 2000 42 + . ID=Transcript:trans-1;Gene=abc-1;Gene=xyz-2;Note=function+unknown
Contig1 confirmed exon 1001 1100 . + . ID=Transcript:trans-1
Contig1 confirmed exon 1201 1300 . + . ID=Transcript:trans-1
Contig1 confirmed exon 1401 1450 . + . ID=Transcript:trans-1
Contig1 confirmed CDS 1051 1100 . + 0 ID=Transcript:trans-1
Contig1 confirmed CDS 1201 1300 . + 2 ID=Transcript:trans-1
Contig1 confirmed CDS 1401 1440 . + 0 ID=Transcript:trans-1
Contig1 est similarity 1001 1100 96 . . Target=EST:CEESC13F 1 100 +
Contig1 est similarity 1201 1300 99 . . Target=EST:CEESC13F 101 200 +
Contig1 est similarity 1401 1450 99 . . Target=EST:CEESC13F 201 250 +
Contig1 tc1 transposon 5001 6000 . + . ID=Transposon:c128.1
Contig1 tc1 transposon 8001 9000 . - . ID=Transposon:c128.2
Contig1 confirmed transcript 30001 31000 . - . ID=Transcript:trans-2;Gene=xyz-2;Note=Terribly+interesting
Contig1 confirmed exon 30001 30100 . - . ID=Transcript:trans-2;Gene=abc-1;Note=function+unknown
Contig1 confirmed exon 30701 30800 . - . ID=Transcript:trans-2
Contig1 confirmed exon 30801 31000 . - . ID=Transcript:trans-2
##sequence-region Contig2 1 37450
Contig2 clone Component 1 2000 . . . Target=Clone:AL12345.1 1 2000 +;Note=Terribly+interesting
Contig2 clone Component 2001 5000 . . . Target=Clone:AL11111.1 6000 3001 +
Contig2 clone Component 5001 20000 . . . Target=Clone:AC13221.2 1 15000 +
Contig2 clone Component 2001 37450 . . . Target=Clone:M7.3 1001 36450 +
Contig2 predicted transcript 2501 4500 . + . ID=Transcript:trans-3;Alias=trans-18
Contig2 predicted transcript 5001 8001 . - . ID=Transcript:trans-4
#processed_transcript
Contig3 clone Component 1 50000 . . . ID=Clone:AL12345.2
Contig3 confirmed mRNA 32000 35000 . + . ID=mRNA:trans-8
Contig3 confirmed UTR 32000 32100 . + . ID=mRNA:trans-8
Contig3 confirmed CDS 32101 33000 . + . ID=mRNA:trans-8
Contig3 confirmed CDS 34000 34500 . + . ID=mRNA:trans-8
Contig3 confirmed CDS 34600 34900 . + . ID=mRNA:trans-8
Contig3 confirmed UTR 34901 35000 . + . ID=mRNA:trans-8
## preferred group assignments
Contig4 clone Component 1 50000 . . . ID=Clone:ABC123
Contig4 confirmed gene 32000 35000 . + . ID=Misc:thing1;gene=gene-9
Contig4 confirmed mRNA 32000 35000 . + . ID=Misc:thing2;mRNA=trans-9;gene=gene-9
Contig4 confirmed CDS 32000 35000 . + . ID=Misc:thing3;mRNA=trans-9