No. words: 2989; after pruning: 2826


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.1 (1,1:768)  628  3.27 0.00 0.00  ML4924F       10   713 (21)  C ML4924R   (3)   760    57 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    2
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1  C ML4924R         763 
   19    ML4924F          25 
  275  C ML4924R         489 
  610    ML4924F         616 
  622  C ML4924R         142 
  660    ML4924F         666 
  668  C ML4924R          96 
Contig length: old 769, new 763

Contig length: old 763, new 708
New start: 0 

Contig 1 unpadded => padded conversion:
  200 =>   200
  400 =>   400
  600 =>   600