!!SEQUENCE_LIST 1.0
BLASTP 2.2.1 [Apr-13-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= /v0/people/staji002/test.gcg
(146 letters)
Database: pir
274,514 sequences; 93,460,074 total letters
Searching. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .done
Score E
Sequences producing significant alignments: (bits) Value ..
PIR2:S44629 Begin: 342 End: 470
!F22B7.10 protein - Caenorhabditis elegans 57 2e-08
PIR2:T21398 Begin: 40 End: 108
!hypothetical protein F26D2.1 - Caenorhabditis elegans 33 0.40
PIR1:WMBELM Begin: 307 End: 385
!membrane protein LMP-2A - human herpesvirus 4 32 0.53
\\End of List
>PIR2:S44629 F22B7.10 protein - Caenorhabditis elegans
Length = 628
Score = 57.0 bits (136), Expect = 2e-08
Identities = 38/135 (28%), Positives = 69/135 (50%), Gaps = 8/135 (5%)
Query: 3 CAAEFDFMEKETPLRYTKTXXXXXXXXXXXXXXRKIISDMWGVLAKQQTHVRKHQFDHGE 62
C+AEFDF++ T + T + + +L + + ++GE
Sbjct: 342 CSAEFDFIQYSTIEKLCGTLLIPLALISLVTFVFNFVKNT-NLLWRNSEEIG----ENGE 396
Query: 63 LVYHALQLLAYTALGILIMRLKLFLTPYMCVMASLICSRQLFGW--LFCKVHPGAIVFVI 120
++Y+ +QL T + LIMRLKLF+TP++C++A+L + +L G + + A+V VI
Sbjct: 397 ILYNVVQLCCSTVMAFLIMRLKLFMTPHLCIVAALFANSKLLGGDRISKTIRVSALVGVI 456
Query: 121 LAAMSIQGSANLQTQ 135
A + +G N++ Q
Sbjct: 457 -AILFYRGIPNIRQQ 470
>PIR2:T21398 hypothetical protein F26D2.1 - Caenorhabditis elegans
Length = 346
Score = 32.7 bits (73), Expect = 0.40
Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 11/71 (15%)
Query: 66 HALQLLAYTALGILIMRLKLFLTPYMCV---------MASLICSRQLFGWLFCKVHPGAI 116
+ + ++A+ +LGI+ L++F+ PY+ V +++ I ++ L WLF + G +
Sbjct: 40 YRIMIVAFASLGIIYSGLEVFIKPYLHVYNNCILYFSLSTWISAKPLLPWLFA-IWSG-M 97
Query: 117 VFVILAAMSIQ 127
V++A +SIQ
Sbjct: 98 YLVVIAFISIQ 108
>PIR1:WMBELM membrane protein LMP-2A - human herpesvirus 4
Length = 497
Score = 32.3 bits (72), Expect = 0.53
Identities = 26/79 (32%), Positives = 38/79 (47%), Gaps = 4/79 (5%)
Query: 67 ALQLLAYTALGILIMRLKLFLTPYMCVMASLICSR----QLFGWLFCKVHPGAIVFVILA 122
AL LLA LG L + L ++ LICS L L ++ A+ ++LA
Sbjct: 307 ALALLASLILGTLNLTTMFLLMLLWTLVVLLICSSCSSCPLSKILLARLFLYALALLLLA 366
Query: 123 AMSIQGSANLQTQWKSTAS 141
+ I G + LQT +KS +S
Sbjct: 367 SALIAGGSILQTNFKSLSS 385
Database: pir
Posted date: Jan 3, 2002 1:13 PM
Number of letters in database: 93,460,074
Number of sequences in database: 274,514
Lambda K H
0.329 0.137 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,034,208
Number of Sequences: 274514
Number of extensions: 620007
Number of successful extensions: 1381
Number of sequences better than 1.0: 3
Number of HSP's better than 1.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1379
Number of HSP's gapped (non-prelim): 3
length of query: 146
length of database: 93,460,074
effective HSP length: 102
effective length of query: 44
effective length of database: 65,459,646
effective search space: 2880224424
effective search space used: 2880224424
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 70 (31.6 bits)