hmmpfam - search one or more sequences against HMM database
HMMER 2.2g (August 2001)
Copyright (C) 1992-2001 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: Pfam
Sequence file: L77119.faa
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Query sequence: gi|1522636|gb|AAC37060.1|
Accession: [none]
Description: M. jannaschii predicted coding region MJECS02 [Methanococcus jannaschii]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Methylase_M Type I restriction modification system, M -105.2 0.0022 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Methylase_M 1/1 280 481 .. 1 279 [] -105.2 0.0022
Alignments of top-scoring domains:
Methylase_M: domain 1 of 1, from 280 to 481: score -105.2, E = 0.0022
*->lrnELentLWavADkLRGsmDaseYKdyVLGLlFlKYiSdkFlerri
++EL+++ av+ R L+F K++ dk
gi|1522636 280 NTSELDKKKFAVLLMNR--------------LIFIKFLEDK------ 306
eieerktdtesepsldyakledqyeqlededlekedfyqkkGvFilPsql
+i+ p + + +++y ++ ++ ++y ++ + l
gi|1522636 307 GIV---------PRDLLRRTYEDY---KKSNVLI-NYYDAY-L----KPL 338
FwdfikeaeknkldedigtdldkifseledqialgypaSeedfkGlfpdl
F++++ e ++ ++++ + + ++ + + Glf ++
gi|1522636 339 FYEVLNTPEDER--KENIRT-NPYYKDIPYL---N-G-------GLFRSN 374
dfnsnkLgskaqarnetLtelidlfselelgtPmHNG.dfeelgikDlfG
++ ++ +s+ +ne ++e+i+ +++ +++ G++ +el D++G
gi|1522636 375 NV--PNELSFTIKDNEIIGEVINFLERYKFTLSTSEGsEEVELNP-DILG 421
DaYEYLLgkFAeneGKsGGeFYTPqeVSkLiaeiLtigqpsegdfsIYDP
+YE L+ Ae K+ G +YTP e++ ia+ + i+ ++
gi|1522636 422 YVYEKLINILAEKGQKGLGAYYTPDEITSYIAKNT-IEPIVVE------- 463
AcGSGSLllqaskflgehdgkrnaisyYGQEsn<-*
+++ ++ k+n+i + s+
gi|1522636 464 ---------RFKEIIK--NWKINDINF----ST 481
//