Supplemental results for CODEML (seqf: lysozymeSmall.txt treef: lysozymeSmall.trees)
Number of codon sites with 0,1,2,3 position differences
2 vs. 1 122 8 0 0 0.2782 (0.0133 0.0478)
3 vs. 1 107 20 2 1 1.1086 (0.0742 0.0670)
3 vs. 2 108 18 3 1 1.1055 (0.0742 0.0671)
4 vs. 1 108 18 4 0 1.1979 (0.0725 0.0605)
4 vs. 2 105 20 5 0 0.9234 (0.0797 0.0863)
4 vs. 3 118 12 0 0 0.5517 (0.0267 0.0484)
5 vs. 1 114 13 3 0 1.8744 (0.0562 0.0300)
5 vs. 2 113 13 4 0 1.0215 (0.0561 0.0550)
5 vs. 3 115 13 2 0 1.2973 (0.0473 0.0364)
5 vs. 4 114 14 2 0 1.3970 (0.0508 0.0364)
6 vs. 1 106 19 5 0 0.4701 (0.0633 0.1346)
6 vs. 2 107 17 6 0 0.4688 (0.0633 0.1349)
6 vs. 3 104 20 4 2 0.5159 (0.0775 0.1502)
6 vs. 4 98 25 6 1 0.5833 (0.0959 0.1645)
6 vs. 5 110 14 6 0 0.4544 (0.0559 0.1230)
7 vs. 1 103 25 2 0 0.4725 (0.0634 0.1341)
7 vs. 2 106 21 3 0 0.5925 (0.0633 0.1069)
7 vs. 3 105 20 3 2 0.4702 (0.0704 0.1496)
7 vs. 4 99 25 5 1 0.5411 (0.0886 0.1638)
7 vs. 5 110 16 4 0 0.3995 (0.0490 0.1225)
7 vs. 6 122 8 0 0 0.1595 (0.0099 0.0619)
TREE # 1
Ancestral reconstruction by CODONML.
((Hsa_Human: 0.007565, Hla_gibbon: 0.011517): 0.020710, ((Cgu/Can_colobus: 0.012982, Pne_langur: 0.015429): 0.032838, Mmu_rhesus: 0.005765): 0.012982, (Ssc_squirrelM: 0.012140, Cja_marmoset: 0.007035): 0.035889);
((1, 2), ((3, 4), 5), (6, 7));
8..9 9..1 9..2 8..10 10..11 11..3 11..4 10..5 8..12 12..6 12..7
tree with node labels for Rod Page's TreeView
((1_Hsa_Human: 0.007565, 2_Hla_gibbon: 0.011517) 9 : 0.020710, ((3_Cgu/Can_colobus: 0.012982, 4_Pne_langur: 0.015429) 11 : 0.032838, 5_Mmu_rhesus: 0.005765) 10 : 0.012982, (6_Ssc_squirrelM: 0.012140, 7_Cja_marmoset: 0.007035) 12 : 0.035889) 8 ;
Nodes 8 to 12 are ancestral
(1) Marginal reconstruction of ancestral sequences (eqn. 4 in Yang et al. 1995 Genetics 141:1641-1650).
Prob of best character at each node, listed by site
Site Freq Data:
1 2 AAG (K) AAG (K) AAG (K) AAG (K) AAG (K) AAG (K) AAG (K) : AAG K 1.000 (K 1.000) AAG K 1.000 (K 1.000) AAG K 1.000 (K 1.000) AAG K 1.000 (K 1.000) AAG K 1.000 (K 1.000)
2 1 GTC (V) GTC (V) ATC (I) ATC (I) ATC (I) GTC (V) GTC (V) : GTC V 0.967 (V 0.967) GTC V 1.000 (V 1.000) ATC I 0.992 (I 0.992) ATC I 1.000 (I 1.000) GTC V 1.000 (V 1.000)
3 1 TTT (F) TTT (F) TTT (F) TTT (F) TTT (F) TTC (F) TTT (F) : TTT F 1.000 (F 1.000) TTT F 1.000 (F 1.000) TTT F 1.000 (F 1.000) TTT F 1.000 (F 1.000) TTT F 0.985 (F 1.000)
4 1 GAA (E) GAA (E) GAA (E) GAA (E) GAA (E) GAA (E) GAA (E) : GAA E 1.000 (E 1.000) GAA E 1.000 (E 1.000) GAA E 1.000 (E 1.000) GAA E 1.000 (E 1.000) GAA E 1.000 (E 1.000)
5 2 AGG (R) AGG (R) AGG (R) AGG (R) AGG (R) AGG (R) AGG (R) : AGG R 1.000 (R 1.000) AGG R 1.000 (R 1.000) AGG R 1.000 (R 1.000) AGG R 1.000 (R 1.000) AGG R 1.000 (R 1.000)
6 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000)
7 2 GAG (E) GAG (E) GAG (E) GAG (E) GAG (E) GAG (E) GAG (E) : GAG E 1.000 (E 1.000) GAG E 1.000 (E 1.000) GAG E 1.000 (E 1.000) GAG E 1.000 (E 1.000) GAG E 1.000 (E 1.000)
8 3 TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) : TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000)
9 3 GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) : GCC A 1.000 (A 1.000) GCC A 1.000 (A 1.000) GCC A 1.000 (A 1.000) GCC A 1.000 (A 1.000) GCC A 1.000 (A 1.000)
10 1 AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) : AGA R 1.000 (R 1.000) AGA R 1.000 (R 1.000) AGA R 1.000 (R 1.000) AGA R 1.000 (R 1.000) AGA R 1.000 (R 1.000)
11 2 ACT (T) ACT (T) ACT (T) ACT (T) ACT (T) ACT (T) ACT (T) : ACT T 1.000 (T 1.000) ACT T 1.000 (T 1.000) ACT T 1.000 (T 1.000) ACT T 1.000 (T 1.000) ACT T 1.000 (T 1.000)
12 2 CTG (L) CTG (L) CTG (L) CTG (L) CTG (L) CTG (L) CTG (L) : CTG L 1.000 (L 1.000) CTG L 1.000 (L 1.000) CTG L 1.000 (L 1.000) CTG L 1.000 (L 1.000) CTG L 1.000 (L 1.000)
13 2 AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) : AAA K 1.000 (K 1.000) AAA K 1.000 (K 1.000) AAA K 1.000 (K 1.000) AAA K 1.000 (K 1.000) AAA K 1.000 (K 1.000)
14 1 AGA (R) AGA (R) AAA (K) AAA (K) AGA (R) AGG (R) AGG (R) : AGA R 0.990 (R 1.000) AGA R 1.000 (R 1.000) AGA R 0.998 (R 0.998) AAA K 0.994 (K 0.994) AGG R 0.998 (R 1.000)
15 1 TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) CTT (L) TTT (F) : TTG L 0.999 (L 1.000) TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000) TTT F 0.990 (F 0.990)
16 5 GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) : GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000)
17 1 ATG (M) ATG (M) CTG (L) CTG (L) CTG (L) ATG (M) CTG (L) : CTG L 0.871 (L 0.871) ATG M 1.000 (M 1.000) CTG L 1.000 (L 1.000) CTG L 1.000 (L 1.000) CTG L 0.871 (L 0.871)
18 4 GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) : GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000)
19 3 GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) : GGC G 1.000 (G 1.000) GGC G 1.000 (G 1.000) GGC G 1.000 (G 1.000) GGC G 1.000 (G 1.000) GGC G 1.000 (G 1.000)
20 2 TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) : TAC Y 1.000 (Y 1.000) TAC Y 1.000 (Y 1.000) TAC Y 1.000 (Y 1.000) TAC Y 1.000 (Y 1.000) TAC Y 1.000 (Y 1.000)
21 1 AGG (R) AGG (R) AAG (K) AAG (K) AGG (R) AGG (R) AGG (R) : AGG R 1.000 (R 1.000) AGG R 1.000 (R 1.000) AGG R 0.998 (R 0.998) AAG K 0.995 (K 0.995) AGG R 1.000 (R 1.000)
22 5 GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) : GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000)
23 1 ATC (I) ATC (I) GTC (V) GTC (V) ATC (I) ATC (I) ATC (I) : ATC I 1.000 (I 1.000) ATC I 1.000 (I 1.000) ATC I 0.999 (I 0.999) GTC V 0.996 (V 0.996) ATC I 1.000 (I 1.000)
24 3 AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) : AGC S 1.000 (S 1.000) AGC S 1.000 (S 1.000) AGC S 1.000 (S 1.000) AGC S 1.000 (S 1.000) AGC S 1.000 (S 1.000)
25 1 CTA (L) CTA (L) CTA (L) CTA (L) CTA (L) CTA (L) CTA (L) : CTA L 1.000 (L 1.000) CTA L 1.000 (L 1.000) CTA L 1.000 (L 1.000) CTA L 1.000 (L 1.000) CTA L 1.000 (L 1.000)
26 5 GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) : GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000)
27 4 AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) : AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000)
28 5 TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) : TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000)
29 1 ATG (M) ATG (M) GTG (V) GTG (V) GTG (V) ATG (M) ATG (M) : ATG M 0.974 (M 0.974) ATG M 1.000 (M 1.000) GTG V 0.993 (V 0.993) GTG V 1.000 (V 1.000) ATG M 1.000 (M 1.000)
30 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000)
31 3 TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) : TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000)
32 3 GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) : GCC A 1.000 (A 1.000) GCC A 1.000 (A 1.000) GCC A 1.000 (A 1.000) GCC A 1.000 (A 1.000) GCC A 1.000 (A 1.000)
33 2 AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) : AAA K 1.000 (K 1.000) AAA K 1.000 (K 1.000) AAA K 1.000 (K 1.000) AAA K 1.000 (K 1.000) AAA K 1.000 (K 1.000)
34 5 TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) : TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000)
35 2 GAG (E) GAG (E) GAG (E) GAG (E) GAG (E) GAG (E) GAG (E) : GAG E 1.000 (E 1.000) GAG E 1.000 (E 1.000) GAG E 1.000 (E 1.000) GAG E 1.000 (E 1.000) GAG E 1.000 (E 1.000)
36 1 AGT (S) AGT (S) AGT (S) AGT (S) AGT (S) AGT (S) AGT (S) : AGT S 1.000 (S 1.000) AGT S 1.000 (S 1.000) AGT S 1.000 (S 1.000) AGT S 1.000 (S 1.000) AGT S 1.000 (S 1.000)
37 1 GGT (G) GGT (G) GGT (G) GGT (G) AAT (N) GAC (D) GAT (D) : GAT D 0.742 (D 0.743) GGT G 0.996 (G 0.996) GAT D 0.696 (D 0.696) GGT G 0.993 (G 0.993) GAT D 0.959 (D 0.999)
38 1 TAC (Y) TAT (Y) TAT (Y) TAT (Y) TAT (Y) TAT (Y) TAT (Y) : TAT Y 0.999 (Y 1.000) TAT Y 0.962 (Y 1.000) TAT Y 1.000 (Y 1.000) TAT Y 1.000 (Y 1.000) TAT Y 1.000 (Y 1.000)
39 4 AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) : AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000)
40 2 ACA (T) ACA (T) ACA (T) ACA (T) ACA (T) ACA (T) ACA (T) : ACA T 1.000 (T 1.000) ACA T 1.000 (T 1.000) ACA T 1.000 (T 1.000) ACA T 1.000 (T 1.000) ACA T 1.000 (T 1.000)
41 1 CGA (R) CGA (R) GAC (D) GAA (E) CAA (Q) CGT (R) CGT (R) : CGA R 0.977 (R 0.978) CGA R 1.000 (R 1.000) CAA Q 0.990 (Q 0.990) GAA E 0.992 (E 0.992) CGT R 1.000 (R 1.000)
42 3 GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) : GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000)
43 2 ACA (T) ACA (T) ACA (T) ACA (T) ACA (T) ACA (T) ACA (T) : ACA T 1.000 (T 1.000) ACA T 1.000 (T 1.000) ACA T 1.000 (T 1.000) ACA T 1.000 (T 1.000) ACA T 1.000 (T 1.000)
44 4 AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) : AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000)
45 2 TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) : TAC Y 1.000 (Y 1.000) TAC Y 1.000 (Y 1.000) TAC Y 1.000 (Y 1.000) TAC Y 1.000 (Y 1.000) TAC Y 1.000 (Y 1.000)
46 2 AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) : AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000)
47 1 GCT (A) CCT (P) CCT (P) CCT (P) CCT (P) CCT (P) CCT (P) : CCT P 1.000 (P 1.000) CCT P 0.998 (P 0.998) CCT P 1.000 (P 1.000) CCT P 1.000 (P 1.000) CCT P 1.000 (P 1.000)
48 5 GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) : GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000)
49 1 GAC (D) GAC (D) GAT (D) GAC (D) GAC (D) GAC (D) GAC (D) : GAC D 1.000 (D 1.000) GAC D 1.000 (D 1.000) GAC D 1.000 (D 1.000) GAC D 0.989 (D 1.000) GAC D 1.000 (D 1.000)
50 1 AGA (R) AGA (R) GAA (E) GAA (E) CAA (Q) CAA (Q) CAA (Q) : CAA Q 0.980 (Q 0.980) AGA R 0.994 (R 0.995) CAA Q 0.990 (Q 0.990) GAA E 0.998 (E 0.998) CAA Q 1.000 (Q 1.000)
51 3 AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) : AGC S 1.000 (S 1.000) AGC S 1.000 (S 1.000) AGC S 1.000 (S 1.000) AGC S 1.000 (S 1.000) AGC S 1.000 (S 1.000)
52 2 ACT (T) ACT (T) ACT (T) ACT (T) ACT (T) ACT (T) ACT (T) : ACT T 1.000 (T 1.000) ACT T 1.000 (T 1.000) ACT T 1.000 (T 1.000) ACT T 1.000 (T 1.000) ACT T 1.000 (T 1.000)
53 4 GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) : GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000)
54 1 TAT (Y) TAT (Y) TAT (Y) TAT (Y) TAT (Y) TAT (Y) TAT (Y) : TAT Y 1.000 (Y 1.000) TAT Y 1.000 (Y 1.000) TAT Y 1.000 (Y 1.000) TAT Y 1.000 (Y 1.000) TAT Y 1.000 (Y 1.000)
55 1 GGG (G) GGG (G) GGG (G) GGG (G) GGG (G) GGG (G) GGG (G) : GGG G 1.000 (G 1.000) GGG G 1.000 (G 1.000) GGG G 1.000 (G 1.000) GGG G 1.000 (G 1.000) GGG G 1.000 (G 1.000)
56 1 ATA (I) ATA (I) ATA (I) ATA (I) ATA (I) ATA (I) ATA (I) : ATA I 1.000 (I 1.000) ATA I 1.000 (I 1.000) ATA I 1.000 (I 1.000) ATA I 1.000 (I 1.000) ATA I 1.000 (I 1.000)
57 1 TTT (F) TTT (F) TTT (F) TTT (F) TTT (F) TTT (F) TTT (F) : TTT F 1.000 (F 1.000) TTT F 1.000 (F 1.000) TTT F 1.000 (F 1.000) TTT F 1.000 (F 1.000) TTT F 1.000 (F 1.000)
58 2 CAG (Q) CAG (Q) CAG (Q) CAG (Q) CAG (Q) CAG (Q) CAG (Q) : CAG Q 1.000 (Q 1.000) CAG Q 1.000 (Q 1.000) CAG Q 1.000 (Q 1.000) CAG Q 1.000 (Q 1.000) CAG Q 1.000 (Q 1.000)
59 2 ATC (I) ATC (I) ATC (I) ATC (I) ATC (I) ATC (I) ATC (I) : ATC I 1.000 (I 1.000) ATC I 1.000 (I 1.000) ATC I 1.000 (I 1.000) ATC I 1.000 (I 1.000) ATC I 1.000 (I 1.000)
60 2 AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) : AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000)
61 3 AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) : AGC S 1.000 (S 1.000) AGC S 1.000 (S 1.000) AGC S 1.000 (S 1.000) AGC S 1.000 (S 1.000) AGC S 1.000 (S 1.000)
62 1 CGC (R) CGC (R) CGC (R) CGC (R) CAC (H) CAC (H) CAC (H) : CAC H 0.742 (H 0.742) CGC R 0.999 (R 0.999) CAC H 0.748 (H 0.748) CGC R 0.998 (R 0.998) CAC H 1.000 (H 1.000)
63 1 TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAT (Y) TAT (Y) : TAC Y 0.994 (Y 1.000) TAC Y 1.000 (Y 1.000) TAC Y 1.000 (Y 1.000) TAC Y 1.000 (Y 1.000) TAT Y 0.997 (Y 1.000)
64 5 TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) : TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000)
65 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000)
66 1 AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) AAC (N) : AAT N 0.998 (N 1.000) AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000) AAT N 0.889 (N 1.000)
67 1 GAT (D) GAT (D) AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) : AAT N 0.970 (N 0.970) GAT D 0.994 (D 0.994) AAT N 0.999 (N 0.999) AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000)
68 3 GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) : GGC G 1.000 (G 1.000) GGC G 1.000 (G 1.000) GGC G 1.000 (G 1.000) GGC G 1.000 (G 1.000) GGC G 1.000 (G 1.000)
69 1 AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) AGA (R) AGA (R) : AAA K 0.992 (K 0.992) AAA K 1.000 (K 1.000) AAA K 1.000 (K 1.000) AAA K 1.000 (K 1.000) AGA R 0.998 (R 0.998)
70 1 ACC (T) ACC (T) ACC (T) ACC (T) ACC (T) ACC (T) ACC (T) : ACC T 1.000 (T 1.000) ACC T 1.000 (T 1.000) ACC T 1.000 (T 1.000) ACC T 1.000 (T 1.000) ACC T 1.000 (T 1.000)
71 2 CCA (P) CCA (P) CCA (P) CCA (P) CCA (P) CCA (P) CCA (P) : CCA P 1.000 (P 1.000) CCA P 1.000 (P 1.000) CCA P 1.000 (P 1.000) CCA P 1.000 (P 1.000) CCA P 1.000 (P 1.000)
72 5 GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) : GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000)
73 5 GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) : GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000)
74 2 GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) : GTT V 1.000 (V 1.000) GTT V 1.000 (V 1.000) GTT V 1.000 (V 1.000) GTT V 1.000 (V 1.000) GTT V 1.000 (V 1.000)
75 1 AAT (N) AAT (N) AAT (N) GAT (D) AAT (N) AAT (N) AAT (N) : AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000) AAT N 0.964 (N 0.964) AAT N 1.000 (N 1.000)
76 3 GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) : GCC A 1.000 (A 1.000) GCC A 1.000 (A 1.000) GCC A 1.000 (A 1.000) GCC A 1.000 (A 1.000) GCC A 1.000 (A 1.000)
77 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000)
78 1 CAT (H) CAT (H) CAT (H) CAT (H) CAT (H) CAT (H) CAT (H) : CAT H 1.000 (H 1.000) CAT H 1.000 (H 1.000) CAT H 1.000 (H 1.000) CAT H 1.000 (H 1.000) CAT H 1.000 (H 1.000)
79 1 TTA (L) TTA (L) ATA (I) ATA (I) ATA (I) ATA (I) ATA (I) : ATA I 0.997 (I 0.997) TTA L 1.000 (L 1.000) ATA I 1.000 (I 1.000) ATA I 1.000 (I 1.000) ATA I 1.000 (I 1.000)
80 1 TCC (S) TCC (S) TCC (S) TCC (S) TCC (S) TCC (S) TCC (S) : TCC S 1.000 (S 1.000) TCC S 1.000 (S 1.000) TCC S 1.000 (S 1.000) TCC S 1.000 (S 1.000) TCC S 1.000 (S 1.000)
81 1 TGC (C) TGC (C) TGC (C) TGC (C) TGC (C) TGC (C) TGC (C) : TGC C 1.000 (C 1.000) TGC C 1.000 (C 1.000) TGC C 1.000 (C 1.000) TGC C 1.000 (C 1.000) TGC C 1.000 (C 1.000)
82 1 AGT (S) AAT (N) AAT (N) AGT (S) AAT (N) AAT (N) AAT (N) : AAT N 0.998 (N 0.998) AAT N 0.957 (N 0.957) AAT N 0.999 (N 0.999) AAT N 0.963 (N 0.963) AAT N 1.000 (N 1.000)
83 3 GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) : GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000)
84 3 TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) : TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000)
85 2 CTG (L) CTG (L) CTG (L) CTG (L) CTG (L) CTG (L) CTG (L) : CTG L 1.000 (L 1.000) CTG L 1.000 (L 1.000) CTG L 1.000 (L 1.000) CTG L 1.000 (L 1.000) CTG L 1.000 (L 1.000)
86 3 CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) : CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000)
87 1 GAT (D) GAT (D) AAT (N) AAC (N) GAT (D) GAT (D) GAT (D) : GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 0.996 (D 0.997) AAT N 0.983 (N 0.993) GAT D 1.000 (D 1.000)
88 1 AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) GAC (D) GAC (D) : AAC N 0.993 (N 0.993) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) GAC D 0.998 (D 0.998)
89 2 ATC (I) ATC (I) ATC (I) ATC (I) ATC (I) ATC (I) ATC (I) : ATC I 1.000 (I 1.000) ATC I 1.000 (I 1.000) ATC I 1.000 (I 1.000) ATC I 1.000 (I 1.000) ATC I 1.000 (I 1.000)
90 1 GCT (A) GCC (A) GCT (A) GCT (A) GCT (A) ACT (T) ACT (T) : GCT A 0.994 (A 0.994) GCT A 0.985 (A 1.000) GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000) ACT T 0.998 (T 0.998)
91 1 GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) CAA (Q) GAA (E) : GAT D 0.997 (D 0.997) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAA E 0.995 (E 0.995)
92 3 GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) : GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000)
93 1 GTA (V) GTA (V) GTA (V) GTA (V) GTA (V) GTG (V) GTG (V) : GTA V 0.993 (V 1.000) GTA V 1.000 (V 1.000) GTA V 1.000 (V 1.000) GTA V 1.000 (V 1.000) GTG V 0.998 (V 1.000)
94 1 GCT (A) GCT (A) GCT (A) GCT (A) ACT (T) GCC (A) GCC (A) : GCT A 0.990 (A 0.998) GCT A 1.000 (A 1.000) GCT A 0.947 (A 0.947) GCT A 1.000 (A 1.000) GCC A 0.998 (A 1.000)
95 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000)
96 5 GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) : GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000)
97 2 AAG (K) AAG (K) AAG (K) AAG (K) AAG (K) AAG (K) AAG (K) : AAG K 1.000 (K 1.000) AAG K 1.000 (K 1.000) AAG K 1.000 (K 1.000) AAG K 1.000 (K 1.000) AAG K 1.000 (K 1.000)
98 2 AGG (R) AGG (R) AGG (R) AGG (R) AGG (R) AGG (R) AGG (R) : AGG R 1.000 (R 1.000) AGG R 1.000 (R 1.000) AGG R 1.000 (R 1.000) AGG R 1.000 (R 1.000) AGG R 1.000 (R 1.000)
99 2 GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) : GTT V 1.000 (V 1.000) GTT V 1.000 (V 1.000) GTT V 1.000 (V 1.000) GTT V 1.000 (V 1.000) GTT V 1.000 (V 1.000)
100 1 GTC (V) GTC (V) GTC (V) GTC (V) GTC (V) GTC (V) GTC (V) : GTC V 1.000 (V 1.000) GTC V 1.000 (V 1.000) GTC V 1.000 (V 1.000) GTC V 1.000 (V 1.000) GTC V 1.000 (V 1.000)
101 1 CGT (R) CGC (R) AGT (S) AGT (S) AGT (S) CGT (R) CGC (R) : CGT R 0.973 (R 0.993) CGT R 0.970 (R 1.000) AGT S 0.995 (S 0.996) AGT S 1.000 (S 1.000) CGT R 0.935 (R 1.000)
102 4 GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) : GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000)
103 2 CCA (P) CCA (P) CCA (P) CCA (P) CCA (P) CCA (P) CCA (P) : CCA P 1.000 (P 1.000) CCA P 1.000 (P 1.000) CCA P 1.000 (P 1.000) CCA P 1.000 (P 1.000) CCA P 1.000 (P 1.000)
104 3 CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) : CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000)
105 3 GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) : GGC G 1.000 (G 1.000) GGC G 1.000 (G 1.000) GGC G 1.000 (G 1.000) GGC G 1.000 (G 1.000) GGC G 1.000 (G 1.000)
106 1 ATT (I) ATT (I) ATT (I) GTT (V) ATT (I) ATT (I) ATT (I) : ATT I 1.000 (I 1.000) ATT I 1.000 (I 1.000) ATT I 1.000 (I 1.000) ATT I 0.978 (I 0.978) ATT I 1.000 (I 1.000)
107 1 AGA (R) AGA (R) CGA (R) CGA (R) AGA (R) AGA (R) AGG (R) : AGA R 0.999 (R 1.000) AGA R 1.000 (R 1.000) AGA R 0.996 (R 1.000) CGA R 0.996 (R 1.000) AGA R 0.921 (R 1.000)
108 5 GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) : GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000)
109 5 TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) : TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000)
110 1 GTG (V) GTG (V) GTG (V) GTG (V) GTG (V) GTG (V) GTG (V) : GTG V 1.000 (V 1.000) GTG V 1.000 (V 1.000) GTG V 1.000 (V 1.000) GTG V 1.000 (V 1.000) GTG V 1.000 (V 1.000)
111 5 GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) : GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000)
112 5 TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) : TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000)
113 1 AGA (R) AGA (R) AAA (K) AGA (R) AGA (R) AAA (K) AAA (K) : AGA R 0.990 (R 0.990) AGA R 1.000 (R 1.000) AGA R 0.997 (R 0.997) AGA R 0.962 (R 0.962) AAA K 0.998 (K 0.998)
114 1 AAT (N) AAT (N) AAG (K) AAT (N) AAT (N) GCT (A) GCT (A) : AAT N 0.984 (N 0.984) AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000) AAT N 0.987 (N 0.988) GCT A 0.998 (A 0.998)
115 1 CGT (R) CGT (R) CAC (H) CAC (H) CAC (H) CAT (H) CAT (H) : CAT H 0.952 (H 0.990) CGT R 0.998 (R 0.998) CAC H 0.998 (H 1.000) CAC H 1.000 (H 1.000) CAT H 1.000 (H 1.000)
116 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000)
117 3 CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) : CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000)
118 4 AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) : AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000)
119 1 AGA (R) AGA (R) AGA (R) AAA (K) AGA (R) AGA (R) AGA (R) : AGA R 1.000 (R 1.000) AGA R 1.000 (R 1.000) AGA R 1.000 (R 1.000) AGA R 0.975 (R 0.975) AGA R 1.000 (R 1.000)
120 4 GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) : GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000)
121 1 GTC (V) CTC (L) GTC (V) GTC (V) GTC (V) GTC (V) GTC (V) : GTC V 1.000 (V 1.000) GTC V 0.998 (V 0.998) GTC V 1.000 (V 1.000) GTC V 1.000 (V 1.000) GTC V 1.000 (V 1.000)
122 1 CGT (R) CGT (R) AGT (S) AGT (S) AGT (S) AGT (S) AGT (S) : AGT S 0.993 (S 0.993) CGT R 0.999 (R 1.000) AGT S 1.000 (S 1.000) AGT S 1.000 (S 1.000) AGT S 1.000 (S 1.000)
123 2 CAG (Q) CAG (Q) CAG (Q) CAG (Q) CAG (Q) CAG (Q) CAG (Q) : CAG Q 1.000 (Q 1.000) CAG Q 1.000 (Q 1.000) CAG Q 1.000 (Q 1.000) CAG Q 1.000 (Q 1.000) CAG Q 1.000 (Q 1.000)
124 1 TAT (Y) TAT (Y) TAT (Y) TAC (Y) TAT (Y) TAT (Y) TAT (Y) : TAT Y 1.000 (Y 1.000) TAT Y 1.000 (Y 1.000) TAT Y 1.000 (Y 1.000) TAT Y 0.993 (Y 1.000) TAT Y 1.000 (Y 1.000)
125 1 GTT (V) ATT (I) GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) : GTT V 1.000 (V 1.000) GTT V 0.988 (V 0.988) GTT V 1.000 (V 1.000) GTT V 1.000 (V 1.000) GTT V 1.000 (V 1.000)
126 1 CAA (Q) CAA (Q) GAA (E) AAA (K) CAA (Q) CAA (Q) CAA (Q) : CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000) GAA E 0.517 (E 0.517) CAA Q 1.000 (Q 1.000)
127 1 GGT (G) GGT (G) GGT (G) GGT (G) GGT (G) GGT (G) GGT (G) : GGT G 1.000 (G 1.000) GGT G 1.000 (G 1.000) GGT G 1.000 (G 1.000) GGT G 1.000 (G 1.000) GGT G 1.000 (G 1.000)
128 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000)
129 5 GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) : GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000)
130 1 GTG (V) GTA (V) GTA (V) GTG (V) GTG (V) GTA (V) GTA (V) : GTG V 0.797 (V 1.000) GTG V 0.795 (V 1.000) GTG V 0.942 (V 1.000) GTG V 0.937 (V 1.000) GTA V 0.998 (V 1.000)
Summary of changes along branches.
Check root for directions of change.
Branch 1: 8..9 (n= 8.5 s= 0.5)
17 L 0.871 -> M 1.000
37 D 0.743 -> G 0.996
50 Q 0.980 -> R 0.995
62 H 0.742 -> R 0.999
67 N 0.970 -> D 0.994
79 I 0.997 -> L 1.000
115 H 0.990 -> R 0.998
122 S 0.993 -> R 1.000
Branch 2: 9..1 (Hsa_Human) (n= 2.0 s= 1.0)
47 P 0.998 -> A
82 N 0.957 -> S
Branch 3: 9..2 (Hla_gibbon) (n= 2.0 s= 3.0)
121 V 0.998 -> L
125 V 0.988 -> I
Branch 4: 8..10 (n= 4.0 s= 1.0)
2 V 0.967 -> I 0.992
29 M 0.974 -> V 0.993
41 R 0.978 -> Q 0.990
101 R 0.993 -> S 0.996
Branch 5: 10..11 (n= 9.0 s= 1.0)
14 R 0.998 -> K 0.994
21 R 0.998 -> K 0.995
23 I 0.999 -> V 0.996
37 D 0.696 -> G 0.993
41 Q 0.990 -> E 0.992
50 Q 0.990 -> E 0.998
62 H 0.748 -> R 0.998
87 D 0.997 -> N 0.993
126 Q 1.000 -> E 0.517
Branch 6: 11..3 (Cgu/Can_colobus) (n= 3.0 s= 2.0)
41 E 0.992 -> D
113 R 0.962 -> K
114 N 0.988 -> K
Branch 7: 11..4 (Pne_langur) (n= 5.0 s= 2.0)
75 N 0.964 -> D
82 N 0.963 -> S
106 I 0.978 -> V
119 R 0.975 -> K
126 E 0.517 -> K
Branch 8: 10..5 (Mmu_rhesus) (n= 2.0 s= 0.0)
37 D 0.696 -> N
94 A 0.947 -> T
Branch 9: 8..12 (n= 8.0 s= 6.0)
15 L 1.000 -> F 0.990
69 K 0.992 -> R 0.998
88 N 0.993 -> D 0.998
90 A 0.994 -> T 0.998
91 D 0.997 -> E 0.995
113 R 0.990 -> K 0.998
114 N 0.984 -> A 0.998
Branch 10: 12..6 (Ssc_squirrelM) (n= 3.0 s= 2.0)
15 F 0.990 -> L
17 L 0.871 -> M
91 E 0.995 -> Q
Branch 11: 12..7 (Cja_marmoset) (n= 0.0 s= 3.0)
List of extant and reconstructed sequences
Hsa_Human AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA ATG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GGT TAC AAC ACA CGA GCT ACA AAC TAC AAT GCT GGA GAC AGA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CGC TAC TGG TGT AAT GAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT TTA TCC TGC AGT GCT TTG CTG CAA GAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC CGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AGA AAT CGT TGT CAA AAC AGA GAT GTC CGT CAG TAT GTT CAA GGT TGT GGA GTG
Hla_gibbon AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA ATG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GGT TAT AAC ACA CGA GCT ACA AAC TAC AAT CCT GGA GAC AGA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CGC TAC TGG TGT AAT GAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT TTA TCC TGC AAT GCT TTG CTG CAA GAT AAC ATC GCC GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC CGC GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AGA AAT CGT TGT CAA AAC AGA GAT CTC CGT CAG TAT ATT CAA GGT TGT GGA GTA
Cgu/Can_colobus AAG ATC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AAA TTG GGA CTG GAT GGC TAC AAG GGA GTC AGC CTA GCA AAC TGG GTG TGT TTG GCC AAA TGG GAG AGT GGT TAT AAC ACA GAC GCT ACA AAC TAC AAT CCT GGA GAT GAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CGC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA AAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC AGT GAT CCA CAA GGC ATT CGA GCA TGG GTG GCA TGG AAA AAG CAC TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT GAA GGT TGT GGA GTA
Pne_langur AAG ATC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AAA TTG GGA CTG GAT GGC TAC AAG GGA GTC AGC CTA GCA AAC TGG GTG TGT TTG GCC AAA TGG GAG AGT GGT TAT AAC ACA GAA GCT ACA AAC TAC AAT CCT GGA GAC GAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CGC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT GAT GCC TGT CAT ATA TCC TGC AGT GCT TTG CTG CAA AAC AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC AGT GAT CCA CAA GGC GTT CGA GCA TGG GTG GCA TGG AGA AAT CAC TGT CAA AAC AAA GAT GTC AGT CAG TAC GTT AAA GGT TGT GGA GTG
Mmu_rhesus AAG ATC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA CTG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG GTG TGT TTG GCC AAA TGG GAG AGT AAT TAT AAC ACA CAA GCT ACA AAC TAC AAT CCT GGA GAC CAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CAC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA GAT AAC ATC GCT GAT GCT GTA ACT TGT GCA AAG AGG GTT GTC AGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AGA AAT CAC TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT CAA GGT TGT GGA GTG
Ssc_squirrelM AAG GTC TTC GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGG CTT GGA ATG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GAC TAT AAC ACA CGT GCT ACA AAC TAC AAT CCT GGA GAC CAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CAC TAT TGG TGT AAT AAT GGC AGA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA GAT GAC ATC ACT CAA GCT GTG GCC TGT GCA AAG AGG GTT GTC CGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AAA GCT CAT TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT CAA GGT TGT GGA GTA
Cja_marmoset AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGG TTT GGA CTG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GAT TAT AAC ACA CGT GCT ACA AAC TAC AAT CCT GGA GAC CAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CAC TAT TGG TGT AAC AAT GGC AGA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA GAT GAC ATC ACT GAA GCT GTG GCC TGT GCA AAG AGG GTT GTC CGC GAT CCA CAA GGC ATT AGG GCA TGG GTG GCA TGG AAA GCT CAT TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT CAA GGT TGT GGA GTA
node #8 AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA CTG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GAT TAT AAC ACA CGA GCT ACA AAC TAC AAT CCT GGA GAC CAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CAC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA GAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC CGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AGA AAT CAT TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT CAA GGT TGT GGA GTG
node #9 AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA ATG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GGT TAT AAC ACA CGA GCT ACA AAC TAC AAT CCT GGA GAC AGA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CGC TAC TGG TGT AAT GAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT TTA TCC TGC AAT GCT TTG CTG CAA GAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC CGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AGA AAT CGT TGT CAA AAC AGA GAT GTC CGT CAG TAT GTT CAA GGT TGT GGA GTG
node #10 AAG ATC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA CTG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG GTG TGT TTG GCC AAA TGG GAG AGT GAT TAT AAC ACA CAA GCT ACA AAC TAC AAT CCT GGA GAC CAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CAC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA GAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC AGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AGA AAT CAC TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT CAA GGT TGT GGA GTG
node #11 AAG ATC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AAA TTG GGA CTG GAT GGC TAC AAG GGA GTC AGC CTA GCA AAC TGG GTG TGT TTG GCC AAA TGG GAG AGT GGT TAT AAC ACA GAA GCT ACA AAC TAC AAT CCT GGA GAC GAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CGC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA AAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC AGT GAT CCA CAA GGC ATT CGA GCA TGG GTG GCA TGG AGA AAT CAC TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT GAA GGT TGT GGA GTG
node #12 AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGG TTT GGA CTG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GAT TAT AAC ACA CGT GCT ACA AAC TAC AAT CCT GGA GAC CAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CAC TAT TGG TGT AAT AAT GGC AGA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA GAT GAC ATC ACT GAA GCT GTG GCC TGT GCA AAG AGG GTT GTC CGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AAA GCT CAT TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT CAA GGT TGT GGA GTA
Overall accuracy of the 5 ancestral sequences:
0.99108 0.99716 0.99439 0.99393 0.99633
for a site.
0.27875 0.67341 0.43633 0.37872 0.60699
for the sequence.
Amino acid sequences inferred by codonml.
Node #8 KVFERCELAR TLKRLGLDGY RGISLANWMC LAKWESDYNT RATNYNPGDQ STDYGIFQIN SHYWCNNGKT PGAVNACHIS CNALLQDNIA DAVACAKRVV RDPQGIRAWV AWRNHCQNRD VSQYVQGCGV
Node #9 KVFERCELAR TLKRLGMDGY RGISLANWMC LAKWESGYNT RATNYNPGDR STDYGIFQIN SRYWCNDGKT PGAVNACHLS CNALLQDNIA DAVACAKRVV RDPQGIRAWV AWRNRCQNRD VRQYVQGCGV
Node #10 KIFERCELAR TLKRLGLDGY RGISLANWVC LAKWESDYNT QATNYNPGDQ STDYGIFQIN SHYWCNNGKT PGAVNACHIS CNALLQDNIA DAVACAKRVV SDPQGIRAWV AWRNHCQNRD VSQYVQGCGV
Node #11 KIFERCELAR TLKKLGLDGY KGVSLANWVC LAKWESGYNT EATNYNPGDE STDYGIFQIN SRYWCNNGKT PGAVNACHIS CNALLQNNIA DAVACAKRVV SDPQGIRAWV AWRNHCQNRD VSQYVEGCGV
Node #12 KVFERCELAR TLKRFGLDGY RGISLANWMC LAKWESDYNT RATNYNPGDQ STDYGIFQIN SHYWCNNGRT PGAVNACHIS CNALLQDDIT EAVACAKRVV RDPQGIRAWV AWKAHCQNRD VSQYVQGCGV
Changes at sites (syn nonsyn).
1 (0.0 0.0)
2 GTC.ATC (0.0 1.0)
3 TTT.TTC (1.0 0.0)
4 (0.0 0.0)
5 (0.0 0.0)
6 (0.0 0.0)
7 (0.0 0.0)
8 (0.0 0.0)
9 (0.0 0.0)
10 (0.0 0.0)
11 (0.0 0.0)
12 (0.0 0.0)
13 (0.0 0.0)
14 AGA.AAA AGA.AGG (1.0 1.0)
15 TTT.CTT TTG.TTT (0.0 2.0)
16 (0.0 0.0)
17 CTG.ATG CTG.ATG (0.0 2.0)
18 (0.0 0.0)
19 (0.0 0.0)
20 (0.0 0.0)
21 AGG.AAG (0.0 1.0)
22 (0.0 0.0)
23 ATC.GTC (0.0 1.0)
24 (0.0 0.0)
25 (0.0 0.0)
26 (0.0 0.0)
27 (0.0 0.0)
28 (0.0 0.0)
29 ATG.GTG (0.0 1.0)
30 (0.0 0.0)
31 (0.0 0.0)
32 (0.0 0.0)
33 (0.0 0.0)
34 (0.0 0.0)
35 (0.0 0.0)
36 (0.0 0.0)
37 GAT.AAT GAT.GAC GAT.GGT GAT.GGT (1.0 3.0)
38 TAT.TAC (1.0 0.0)
39 (0.0 0.0)
40 (0.0 0.0)
41 GAA.GAC CGA.CAA CAA.GAA CGA.CGT (1.0 3.0)
42 (0.0 0.0)
43 (0.0 0.0)
44 (0.0 0.0)
45 (0.0 0.0)
46 (0.0 0.0)
47 CCT.GCT (0.0 1.0)
48 (0.0 0.0)
49 GAC.GAT (1.0 0.0)
50 CAA.AGA CAA.GAA (0.5 2.5)
51 (0.0 0.0)
52 (0.0 0.0)
53 (0.0 0.0)
54 (0.0 0.0)
55 (0.0 0.0)
56 (0.0 0.0)
57 (0.0 0.0)
58 (0.0 0.0)
59 (0.0 0.0)
60 (0.0 0.0)
61 (0.0 0.0)
62 CAC.CGC CAC.CGC (0.0 2.0)
63 TAC.TAT (1.0 0.0)
64 (0.0 0.0)
65 (0.0 0.0)
66 AAT.AAC (1.0 0.0)
67 AAT.GAT (0.0 1.0)
68 (0.0 0.0)
69 AAA.AGA (0.0 1.0)
70 (0.0 0.0)
71 (0.0 0.0)
72 (0.0 0.0)
73 (0.0 0.0)
74 (0.0 0.0)
75 AAT.GAT (0.0 1.0)
76 (0.0 0.0)
77 (0.0 0.0)
78 (0.0 0.0)
79 ATA.TTA (0.0 1.0)
80 (0.0 0.0)
81 (0.0 0.0)
82 AAT.AGT AAT.AGT (0.0 2.0)
83 (0.0 0.0)
84 (0.0 0.0)
85 (0.0 0.0)
86 (0.0 0.0)
87 AAT.AAC GAT.AAT (1.0 1.0)
88 AAC.GAC (0.0 1.0)
89 (0.0 0.0)
90 GCT.GCC GCT.ACT (1.0 1.0)
91 GAA.CAA GAT.GAA (0.0 2.0)
92 (0.0 0.0)
93 GTA.GTG (1.0 0.0)
94 GCT.ACT GCT.GCC (1.0 1.0)
95 (0.0 0.0)
96 (0.0 0.0)
97 (0.0 0.0)
98 (0.0 0.0)
99 (0.0 0.0)
100 (0.0 0.0)
101 CGT.CGC CGT.CGC CGT.AGT (2.0 1.0)
102 (0.0 0.0)
103 (0.0 0.0)
104 (0.0 0.0)
105 (0.0 0.0)
106 ATT.GTT (0.0 1.0)
107 AGA.AGG AGA.CGA (2.0 0.0)
108 (0.0 0.0)
109 (0.0 0.0)
110 (0.0 0.0)
111 (0.0 0.0)
112 (0.0 0.0)
113 AGA.AAA AGA.AAA (0.0 2.0)
114 AAT.AAG AAT.GCT (0.0 3.0)
115 CAT.CGT CAT.CAC (1.0 1.0)
116 (0.0 0.0)
117 (0.0 0.0)
118 (0.0 0.0)
119 AGA.AAA (0.0 1.0)
120 (0.0 0.0)
121 GTC.CTC (0.0 1.0)
122 AGT.CGT (0.0 1.0)
123 (0.0 0.0)
124 TAT.TAC (1.0 0.0)
125 GTT.ATT (0.0 1.0)
126 GAA.AAA CAA.GAA (0.0 2.0)
127 (0.0 0.0)
128 (0.0 0.0)
129 (0.0 0.0)
130 GTG.GTA GTG.GTA GTG.GTA (3.0 0.0)
(2) Joint reconstruction of ancestral sequences (eqn. 2 in Yang et al. 1995 Genetics 141:1641-1650), using the algorithm of Pupko et al. (2000 Mol Biol Evol 17:890-896).
Listed by site, reconstruction (prob.)
Site Freq Data:
1 2 AAG (K) AAG (K) AAG (K) AAG (K) AAG (K) AAG (K) AAG (K) : AAG AAG AAG AAG AAG (0.9999)
2 1 GTC (V) GTC (V) ATC (I) ATC (I) ATC (I) GTC (V) GTC (V) : GTC GTC ATC ATC GTC (0.9589)
3 1 TTT (F) TTT (F) TTT (F) TTT (F) TTT (F) TTC (F) TTT (F) : TTT TTT TTT TTT TTT (0.9846)
4 1 GAA (E) GAA (E) GAA (E) GAA (E) GAA (E) GAA (E) GAA (E) : GAA GAA GAA GAA GAA (0.9999)
5 2 AGG (R) AGG (R) AGG (R) AGG (R) AGG (R) AGG (R) AGG (R) : AGG AGG AGG AGG AGG (1.0000)
6 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT TGT TGT TGT TGT (1.0000)
7 2 GAG (E) GAG (E) GAG (E) GAG (E) GAG (E) GAG (E) GAG (E) : GAG GAG GAG GAG GAG (0.9999)
8 3 TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) : TTG TTG TTG TTG TTG (1.0000)
9 3 GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) : GCC GCC GCC GCC GCC (1.0000)
10 1 AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) : AGA AGA AGA AGA AGA (0.9999)
11 2 ACT (T) ACT (T) ACT (T) ACT (T) ACT (T) ACT (T) ACT (T) : ACT ACT ACT ACT ACT (1.0000)
12 2 CTG (L) CTG (L) CTG (L) CTG (L) CTG (L) CTG (L) CTG (L) : CTG CTG CTG CTG CTG (1.0000)
13 2 AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) : AAA AAA AAA AAA AAA (0.9999)
14 1 AGA (R) AGA (R) AAA (K) AAA (K) AGA (R) AGG (R) AGG (R) : AGA AGA AGA AAA AGG (0.9789)
15 1 TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) CTT (L) TTT (F) : TTG TTG TTG TTG TTT (0.9894)
16 5 GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) : GGA GGA GGA GGA GGA (0.9999)
17 1 ATG (M) ATG (M) CTG (L) CTG (L) CTG (L) ATG (M) CTG (L) : CTG ATG CTG CTG CTG (0.8701)
18 4 GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) : GAT GAT GAT GAT GAT (0.9998)
19 3 GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) : GGC GGC GGC GGC GGC (0.9999)
20 2 TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) : TAC TAC TAC TAC TAC (1.0000)
21 1 AGG (R) AGG (R) AAG (K) AAG (K) AGG (R) AGG (R) AGG (R) : AGG AGG AGG AAG AGG (0.9935)
22 5 GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) : GGA GGA GGA GGA GGA (0.9999)
23 1 ATC (I) ATC (I) GTC (V) GTC (V) ATC (I) ATC (I) ATC (I) : ATC ATC ATC GTC ATC (0.9950)
24 3 AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) : AGC AGC AGC AGC AGC (0.9999)
25 1 CTA (L) CTA (L) CTA (L) CTA (L) CTA (L) CTA (L) CTA (L) : CTA CTA CTA CTA CTA (1.0000)
26 5 GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) : GCA GCA GCA GCA GCA (1.0000)
27 4 AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) : AAC AAC AAC AAC AAC (0.9999)
28 5 TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) : TGG TGG TGG TGG TGG (1.0000)
29 1 ATG (M) ATG (M) GTG (V) GTG (V) GTG (V) ATG (M) ATG (M) : ATG ATG GTG GTG ATG (0.9668)
30 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT TGT TGT TGT TGT (1.0000)
31 3 TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) : TTG TTG TTG TTG TTG (1.0000)
32 3 GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) : GCC GCC GCC GCC GCC (1.0000)
33 2 AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) : AAA AAA AAA AAA AAA (0.9999)
34 5 TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) : TGG TGG TGG TGG TGG (1.0000)
35 2 GAG (E) GAG (E) GAG (E) GAG (E) GAG (E) GAG (E) GAG (E) : GAG GAG GAG GAG GAG (0.9999)
36 1 AGT (S) AGT (S) AGT (S) AGT (S) AGT (S) AGT (S) AGT (S) : AGT AGT AGT AGT AGT (0.9998)
37 1 GGT (G) GGT (G) GGT (G) GGT (G) AAT (N) GAC (D) GAT (D) : GAT GGT GAT GGT GAT (0.6376)
38 1 TAC (Y) TAT (Y) TAT (Y) TAT (Y) TAT (Y) TAT (Y) TAT (Y) : TAT TAT TAT TAT TAT (0.9616)
39 4 AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) : AAC AAC AAC AAC AAC (0.9999)
40 2 ACA (T) ACA (T) ACA (T) ACA (T) ACA (T) ACA (T) ACA (T) : ACA ACA ACA ACA ACA (1.0000)
41 1 CGA (R) CGA (R) GAC (D) GAA (E) CAA (Q) CGT (R) CGT (R) : CGA CGA CAA GAA CGT (0.9586)
42 3 GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) : GCT GCT GCT GCT GCT (1.0000)
43 2 ACA (T) ACA (T) ACA (T) ACA (T) ACA (T) ACA (T) ACA (T) : ACA ACA ACA ACA ACA (1.0000)
44 4 AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) : AAC AAC AAC AAC AAC (0.9999)
45 2 TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) : TAC TAC TAC TAC TAC (1.0000)
46 2 AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) : AAT AAT AAT AAT AAT (0.9998)
47 1 GCT (A) CCT (P) CCT (P) CCT (P) CCT (P) CCT (P) CCT (P) : CCT CCT CCT CCT CCT (0.9979)
48 5 GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) : GGA GGA GGA GGA GGA (0.9999)
49 1 GAC (D) GAC (D) GAT (D) GAC (D) GAC (D) GAC (D) GAC (D) : GAC GAC GAC GAC GAC (0.9890)
50 1 AGA (R) AGA (R) GAA (E) GAA (E) CAA (Q) CAA (Q) CAA (Q) : CAA AGA CAA GAA CAA (0.9726)
51 3 AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) : AGC AGC AGC AGC AGC (0.9999)
52 2 ACT (T) ACT (T) ACT (T) ACT (T) ACT (T) ACT (T) ACT (T) : ACT ACT ACT ACT ACT (1.0000)
53 4 GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) : GAT GAT GAT GAT GAT (0.9998)
54 1 TAT (Y) TAT (Y) TAT (Y) TAT (Y) TAT (Y) TAT (Y) TAT (Y) : TAT TAT TAT TAT TAT (1.0000)
55 1 GGG (G) GGG (G) GGG (G) GGG (G) GGG (G) GGG (G) GGG (G) : GGG GGG GGG GGG GGG (1.0000)
56 1 ATA (I) ATA (I) ATA (I) ATA (I) ATA (I) ATA (I) ATA (I) : ATA ATA ATA ATA ATA (1.0000)
57 1 TTT (F) TTT (F) TTT (F) TTT (F) TTT (F) TTT (F) TTT (F) : TTT TTT TTT TTT TTT (1.0000)
58 2 CAG (Q) CAG (Q) CAG (Q) CAG (Q) CAG (Q) CAG (Q) CAG (Q) : CAG CAG CAG CAG CAG (1.0000)
59 2 ATC (I) ATC (I) ATC (I) ATC (I) ATC (I) ATC (I) ATC (I) : ATC ATC ATC ATC ATC (1.0000)
60 2 AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) : AAT AAT AAT AAT AAT (0.9998)
61 3 AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) : AGC AGC AGC AGC AGC (0.9999)
62 1 CGC (R) CGC (R) CGC (R) CGC (R) CAC (H) CAC (H) CAC (H) : CAC CGC CAC CGC CAC (0.7383)
63 1 TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAT (Y) TAT (Y) : TAC TAC TAC TAC TAT (0.9908)
64 5 TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) : TGG TGG TGG TGG TGG (1.0000)
65 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT TGT TGT TGT TGT (1.0000)
66 1 AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) AAC (N) : AAT AAT AAT AAT AAT (0.8888)
67 1 GAT (D) GAT (D) AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) : AAT GAT AAT AAT AAT (0.9642)
68 3 GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) : GGC GGC GGC GGC GGC (0.9999)
69 1 AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) AGA (R) AGA (R) : AAA AAA AAA AAA AGA (0.9899)
70 1 ACC (T) ACC (T) ACC (T) ACC (T) ACC (T) ACC (T) ACC (T) : ACC ACC ACC ACC ACC (1.0000)
71 2 CCA (P) CCA (P) CCA (P) CCA (P) CCA (P) CCA (P) CCA (P) : CCA CCA CCA CCA CCA (1.0000)
72 5 GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) : GGA GGA GGA GGA GGA (0.9999)
73 5 GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) : GCA GCA GCA GCA GCA (1.0000)
74 2 GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) : GTT GTT GTT GTT GTT (0.9999)
75 1 AAT (N) AAT (N) AAT (N) GAT (D) AAT (N) AAT (N) AAT (N) : AAT AAT AAT AAT AAT (0.9638)
76 3 GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) : GCC GCC GCC GCC GCC (1.0000)
77 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT TGT TGT TGT TGT (1.0000)
78 1 CAT (H) CAT (H) CAT (H) CAT (H) CAT (H) CAT (H) CAT (H) : CAT CAT CAT CAT CAT (1.0000)
79 1 TTA (L) TTA (L) ATA (I) ATA (I) ATA (I) ATA (I) ATA (I) : ATA TTA ATA ATA ATA (0.9961)
80 1 TCC (S) TCC (S) TCC (S) TCC (S) TCC (S) TCC (S) TCC (S) : TCC TCC TCC TCC TCC (1.0000)
81 1 TGC (C) TGC (C) TGC (C) TGC (C) TGC (C) TGC (C) TGC (C) : TGC TGC TGC TGC TGC (1.0000)
82 1 AGT (S) AAT (N) AAT (N) AGT (S) AAT (N) AAT (N) AAT (N) : AAT AAT AAT AAT AAT (0.9225)
83 3 GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) : GCT GCT GCT GCT GCT (1.0000)
84 3 TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) : TTG TTG TTG TTG TTG (1.0000)
85 2 CTG (L) CTG (L) CTG (L) CTG (L) CTG (L) CTG (L) CTG (L) : CTG CTG CTG CTG CTG (1.0000)
86 3 CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) : CAA CAA CAA CAA CAA (1.0000)
87 1 GAT (D) GAT (D) AAT (N) AAC (N) GAT (D) GAT (D) GAT (D) : GAT GAT GAT AAT GAT (0.9799)
88 1 AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) GAC (D) GAC (D) : AAC AAC AAC AAC GAC (0.9905)
89 2 ATC (I) ATC (I) ATC (I) ATC (I) ATC (I) ATC (I) ATC (I) : ATC ATC ATC ATC ATC (1.0000)
90 1 GCT (A) GCC (A) GCT (A) GCT (A) GCT (A) ACT (T) ACT (T) : GCT GCT GCT GCT ACT (0.9782)
91 1 GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) CAA (Q) GAA (E) : GAT GAT GAT GAT GAA (0.9916)
92 3 GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) : GCT GCT GCT GCT GCT (1.0000)
93 1 GTA (V) GTA (V) GTA (V) GTA (V) GTA (V) GTG (V) GTG (V) : GTA GTA GTA GTA GTG (0.9911)
94 1 GCT (A) GCT (A) GCT (A) GCT (A) ACT (T) GCC (A) GCC (A) : GCT GCT GCT GCT GCC (0.9373)
95 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT TGT TGT TGT TGT (1.0000)
96 5 GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) : GCA GCA GCA GCA GCA (1.0000)
97 2 AAG (K) AAG (K) AAG (K) AAG (K) AAG (K) AAG (K) AAG (K) : AAG AAG AAG AAG AAG (0.9999)
98 2 AGG (R) AGG (R) AGG (R) AGG (R) AGG (R) AGG (R) AGG (R) : AGG AGG AGG AGG AGG (1.0000)
99 2 GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) : GTT GTT GTT GTT GTT (0.9999)
100 1 GTC (V) GTC (V) GTC (V) GTC (V) GTC (V) GTC (V) GTC (V) : GTC GTC GTC GTC GTC (1.0000)
101 1 CGT (R) CGC (R) AGT (S) AGT (S) AGT (S) CGT (R) CGC (R) : CGT CGT AGT AGT CGT (0.9153)
102 4 GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) : GAT GAT GAT GAT GAT (0.9998)
103 2 CCA (P) CCA (P) CCA (P) CCA (P) CCA (P) CCA (P) CCA (P) : CCA CCA CCA CCA CCA (1.0000)
104 3 CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) : CAA CAA CAA CAA CAA (1.0000)
105 3 GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) : GGC GGC GGC GGC GGC (0.9999)
106 1 ATT (I) ATT (I) ATT (I) GTT (V) ATT (I) ATT (I) ATT (I) : ATT ATT ATT ATT ATT (0.9779)
107 1 AGA (R) AGA (R) CGA (R) CGA (R) AGA (R) AGA (R) AGG (R) : AGA AGA AGA CGA AGA (0.9144)
108 5 GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) : GCA GCA GCA GCA GCA (1.0000)
109 5 TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) : TGG TGG TGG TGG TGG (1.0000)
110 1 GTG (V) GTG (V) GTG (V) GTG (V) GTG (V) GTG (V) GTG (V) : GTG GTG GTG GTG GTG (1.0000)
111 5 GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) : GCA GCA GCA GCA GCA (1.0000)
112 5 TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) : TGG TGG TGG TGG TGG (1.0000)
113 1 AGA (R) AGA (R) AAA (K) AGA (R) AGA (R) AAA (K) AAA (K) : AGA AGA AGA AGA AAA (0.9527)
114 1 AAT (N) AAT (N) AAG (K) AAT (N) AAT (N) GCT (A) GCT (A) : AAT AAT AAT AAT GCT (0.9702)
115 1 CGT (R) CGT (R) CAC (H) CAC (H) CAC (H) CAT (H) CAT (H) : CAT CGT CAC CAC CAT (0.9482)
116 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT TGT TGT TGT TGT (1.0000)
117 3 CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) : CAA CAA CAA CAA CAA (1.0000)
118 4 AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) : AAC AAC AAC AAC AAC (0.9999)
119 1 AGA (R) AGA (R) AGA (R) AAA (K) AGA (R) AGA (R) AGA (R) : AGA AGA AGA AGA AGA (0.9748)
120 4 GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) : GAT GAT GAT GAT GAT (0.9998)
121 1 GTC (V) CTC (L) GTC (V) GTC (V) GTC (V) GTC (V) GTC (V) : GTC GTC GTC GTC GTC (0.9981)
122 1 CGT (R) CGT (R) AGT (S) AGT (S) AGT (S) AGT (S) AGT (S) : AGT CGT AGT AGT AGT (0.9920)
123 2 CAG (Q) CAG (Q) CAG (Q) CAG (Q) CAG (Q) CAG (Q) CAG (Q) : CAG CAG CAG CAG CAG (1.0000)
124 1 TAT (Y) TAT (Y) TAT (Y) TAC (Y) TAT (Y) TAT (Y) TAT (Y) : TAT TAT TAT TAT TAT (0.9932)
125 1 GTT (V) ATT (I) GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) : GTT GTT GTT GTT GTT (0.9882)
126 1 CAA (Q) CAA (Q) GAA (E) AAA (K) CAA (Q) CAA (Q) CAA (Q) : CAA CAA CAA GAA CAA (0.5165)
127 1 GGT (G) GGT (G) GGT (G) GGT (G) GGT (G) GGT (G) GGT (G) : GGT GGT GGT GGT GGT (0.9998)
128 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT TGT TGT TGT TGT (1.0000)
129 5 GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) : GGA GGA GGA GGA GGA (0.9999)
130 1 GTG (V) GTA (V) GTA (V) GTG (V) GTG (V) GTA (V) GTA (V) : GTG GTG GTG GTG GTA (0.7827)
List of extant and reconstructed sequences
Hsa_Human AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA ATG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GGT TAC AAC ACA CGA GCT ACA AAC TAC AAT GCT GGA GAC AGA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CGC TAC TGG TGT AAT GAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT TTA TCC TGC AGT GCT TTG CTG CAA GAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC CGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AGA AAT CGT TGT CAA AAC AGA GAT GTC CGT CAG TAT GTT CAA GGT TGT GGA GTG
Hla_gibbon AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA ATG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GGT TAT AAC ACA CGA GCT ACA AAC TAC AAT CCT GGA GAC AGA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CGC TAC TGG TGT AAT GAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT TTA TCC TGC AAT GCT TTG CTG CAA GAT AAC ATC GCC GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC CGC GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AGA AAT CGT TGT CAA AAC AGA GAT CTC CGT CAG TAT ATT CAA GGT TGT GGA GTA
Cgu/Can_colobus AAG ATC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AAA TTG GGA CTG GAT GGC TAC AAG GGA GTC AGC CTA GCA AAC TGG GTG TGT TTG GCC AAA TGG GAG AGT GGT TAT AAC ACA GAC GCT ACA AAC TAC AAT CCT GGA GAT GAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CGC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA AAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC AGT GAT CCA CAA GGC ATT CGA GCA TGG GTG GCA TGG AAA AAG CAC TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT GAA GGT TGT GGA GTA
Pne_langur AAG ATC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AAA TTG GGA CTG GAT GGC TAC AAG GGA GTC AGC CTA GCA AAC TGG GTG TGT TTG GCC AAA TGG GAG AGT GGT TAT AAC ACA GAA GCT ACA AAC TAC AAT CCT GGA GAC GAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CGC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT GAT GCC TGT CAT ATA TCC TGC AGT GCT TTG CTG CAA AAC AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC AGT GAT CCA CAA GGC GTT CGA GCA TGG GTG GCA TGG AGA AAT CAC TGT CAA AAC AAA GAT GTC AGT CAG TAC GTT AAA GGT TGT GGA GTG
Mmu_rhesus AAG ATC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA CTG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG GTG TGT TTG GCC AAA TGG GAG AGT AAT TAT AAC ACA CAA GCT ACA AAC TAC AAT CCT GGA GAC CAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CAC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA GAT AAC ATC GCT GAT GCT GTA ACT TGT GCA AAG AGG GTT GTC AGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AGA AAT CAC TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT CAA GGT TGT GGA GTG
Ssc_squirrelM AAG GTC TTC GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGG CTT GGA ATG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GAC TAT AAC ACA CGT GCT ACA AAC TAC AAT CCT GGA GAC CAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CAC TAT TGG TGT AAT AAT GGC AGA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA GAT GAC ATC ACT CAA GCT GTG GCC TGT GCA AAG AGG GTT GTC CGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AAA GCT CAT TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT CAA GGT TGT GGA GTA
Cja_marmoset AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGG TTT GGA CTG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GAT TAT AAC ACA CGT GCT ACA AAC TAC AAT CCT GGA GAC CAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CAC TAT TGG TGT AAC AAT GGC AGA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA GAT GAC ATC ACT GAA GCT GTG GCC TGT GCA AAG AGG GTT GTC CGC GAT CCA CAA GGC ATT AGG GCA TGG GTG GCA TGG AAA GCT CAT TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT CAA GGT TGT GGA GTA
node #8 AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA CTG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GAT TAT AAC ACA CGA GCT ACA AAC TAC AAT CCT GGA GAC CAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CAC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA GAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC CGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AGA AAT CAT TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT CAA GGT TGT GGA GTG
node #9 AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA ATG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GGT TAT AAC ACA CGA GCT ACA AAC TAC AAT CCT GGA GAC AGA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CGC TAC TGG TGT AAT GAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT TTA TCC TGC AAT GCT TTG CTG CAA GAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC CGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AGA AAT CGT TGT CAA AAC AGA GAT GTC CGT CAG TAT GTT CAA GGT TGT GGA GTG
node #10 AAG ATC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA CTG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG GTG TGT TTG GCC AAA TGG GAG AGT GAT TAT AAC ACA CAA GCT ACA AAC TAC AAT CCT GGA GAC CAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CAC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA GAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC AGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AGA AAT CAC TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT CAA GGT TGT GGA GTG
node #11 AAG ATC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AAA TTG GGA CTG GAT GGC TAC AAG GGA GTC AGC CTA GCA AAC TGG GTG TGT TTG GCC AAA TGG GAG AGT GGT TAT AAC ACA GAA GCT ACA AAC TAC AAT CCT GGA GAC GAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CGC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA AAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC AGT GAT CCA CAA GGC ATT CGA GCA TGG GTG GCA TGG AGA AAT CAC TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT GAA GGT TGT GGA GTG
node #12 AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGG TTT GGA CTG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GAT TAT AAC ACA CGT GCT ACA AAC TAC AAT CCT GGA GAC CAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CAC TAT TGG TGT AAT AAT GGC AGA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA GAT GAC ATC ACT GAA GCT GTG GCC TGT GCA AAG AGG GTT GTC CGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AAA GCT CAT TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT CAA GGT TGT GGA GTA
TREE # 2
Ancestral reconstruction by CODONML.
((Hsa_Human: 0.007565, Hla_gibbon: 0.011517): 0.020710, ((Cgu/Can_colobus: 0.012982, Pne_langur: 0.015429): 0.032838, Mmu_rhesus: 0.005766): 0.012982, (Ssc_squirrelM: 0.012140, Cja_marmoset: 0.007035): 0.035889);
((1, 2), ((3, 4), 5), (6, 7));
8..9 9..1 9..2 8..10 10..11 11..3 11..4 10..5 8..12 12..6 12..7
tree with node labels for Rod Page's TreeView
((1_Hsa_Human: 0.007565, 2_Hla_gibbon: 0.011517) 9 : 0.020710, ((3_Cgu/Can_colobus: 0.012982, 4_Pne_langur: 0.015429) 11 : 0.032838, 5_Mmu_rhesus: 0.005766) 10 : 0.012982, (6_Ssc_squirrelM: 0.012140, 7_Cja_marmoset: 0.007035) 12 : 0.035889) 8 ;
Nodes 8 to 12 are ancestral
(1) Marginal reconstruction of ancestral sequences (eqn. 4 in Yang et al. 1995 Genetics 141:1641-1650).
Prob of best character at each node, listed by site
Site Freq Data:
1 2 AAG (K) AAG (K) AAG (K) AAG (K) AAG (K) AAG (K) AAG (K) : AAG K 1.000 (K 1.000) AAG K 1.000 (K 1.000) AAG K 1.000 (K 1.000) AAG K 1.000 (K 1.000) AAG K 1.000 (K 1.000)
2 1 GTC (V) GTC (V) ATC (I) ATC (I) ATC (I) GTC (V) GTC (V) : GTC V 0.967 (V 0.967) GTC V 1.000 (V 1.000) ATC I 0.992 (I 0.992) ATC I 1.000 (I 1.000) GTC V 1.000 (V 1.000)
3 1 TTT (F) TTT (F) TTT (F) TTT (F) TTT (F) TTC (F) TTT (F) : TTT F 1.000 (F 1.000) TTT F 1.000 (F 1.000) TTT F 1.000 (F 1.000) TTT F 1.000 (F 1.000) TTT F 0.985 (F 1.000)
4 1 GAA (E) GAA (E) GAA (E) GAA (E) GAA (E) GAA (E) GAA (E) : GAA E 1.000 (E 1.000) GAA E 1.000 (E 1.000) GAA E 1.000 (E 1.000) GAA E 1.000 (E 1.000) GAA E 1.000 (E 1.000)
5 2 AGG (R) AGG (R) AGG (R) AGG (R) AGG (R) AGG (R) AGG (R) : AGG R 1.000 (R 1.000) AGG R 1.000 (R 1.000) AGG R 1.000 (R 1.000) AGG R 1.000 (R 1.000) AGG R 1.000 (R 1.000)
6 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000)
7 2 GAG (E) GAG (E) GAG (E) GAG (E) GAG (E) GAG (E) GAG (E) : GAG E 1.000 (E 1.000) GAG E 1.000 (E 1.000) GAG E 1.000 (E 1.000) GAG E 1.000 (E 1.000) GAG E 1.000 (E 1.000)
8 3 TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) : TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000)
9 3 GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) : GCC A 1.000 (A 1.000) GCC A 1.000 (A 1.000) GCC A 1.000 (A 1.000) GCC A 1.000 (A 1.000) GCC A 1.000 (A 1.000)
10 1 AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) : AGA R 1.000 (R 1.000) AGA R 1.000 (R 1.000) AGA R 1.000 (R 1.000) AGA R 1.000 (R 1.000) AGA R 1.000 (R 1.000)
11 2 ACT (T) ACT (T) ACT (T) ACT (T) ACT (T) ACT (T) ACT (T) : ACT T 1.000 (T 1.000) ACT T 1.000 (T 1.000) ACT T 1.000 (T 1.000) ACT T 1.000 (T 1.000) ACT T 1.000 (T 1.000)
12 2 CTG (L) CTG (L) CTG (L) CTG (L) CTG (L) CTG (L) CTG (L) : CTG L 1.000 (L 1.000) CTG L 1.000 (L 1.000) CTG L 1.000 (L 1.000) CTG L 1.000 (L 1.000) CTG L 1.000 (L 1.000)
13 2 AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) : AAA K 1.000 (K 1.000) AAA K 1.000 (K 1.000) AAA K 1.000 (K 1.000) AAA K 1.000 (K 1.000) AAA K 1.000 (K 1.000)
14 1 AGA (R) AGA (R) AAA (K) AAA (K) AGA (R) AGG (R) AGG (R) : AGA R 0.990 (R 1.000) AGA R 1.000 (R 1.000) AGA R 0.998 (R 0.998) AAA K 0.994 (K 0.994) AGG R 0.998 (R 1.000)
15 1 TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) CTT (L) TTT (F) : TTG L 0.999 (L 1.000) TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000) TTT F 0.990 (F 0.990)
16 5 GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) : GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000)
17 1 ATG (M) ATG (M) CTG (L) CTG (L) CTG (L) ATG (M) CTG (L) : CTG L 0.871 (L 0.871) ATG M 1.000 (M 1.000) CTG L 1.000 (L 1.000) CTG L 1.000 (L 1.000) CTG L 0.871 (L 0.871)
18 4 GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) : GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000)
19 3 GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) : GGC G 1.000 (G 1.000) GGC G 1.000 (G 1.000) GGC G 1.000 (G 1.000) GGC G 1.000 (G 1.000) GGC G 1.000 (G 1.000)
20 2 TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) : TAC Y 1.000 (Y 1.000) TAC Y 1.000 (Y 1.000) TAC Y 1.000 (Y 1.000) TAC Y 1.000 (Y 1.000) TAC Y 1.000 (Y 1.000)
21 1 AGG (R) AGG (R) AAG (K) AAG (K) AGG (R) AGG (R) AGG (R) : AGG R 1.000 (R 1.000) AGG R 1.000 (R 1.000) AGG R 0.998 (R 0.998) AAG K 0.995 (K 0.995) AGG R 1.000 (R 1.000)
22 5 GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) : GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000)
23 1 ATC (I) ATC (I) GTC (V) GTC (V) ATC (I) ATC (I) ATC (I) : ATC I 1.000 (I 1.000) ATC I 1.000 (I 1.000) ATC I 0.999 (I 0.999) GTC V 0.996 (V 0.996) ATC I 1.000 (I 1.000)
24 3 AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) : AGC S 1.000 (S 1.000) AGC S 1.000 (S 1.000) AGC S 1.000 (S 1.000) AGC S 1.000 (S 1.000) AGC S 1.000 (S 1.000)
25 1 CTA (L) CTA (L) CTA (L) CTA (L) CTA (L) CTA (L) CTA (L) : CTA L 1.000 (L 1.000) CTA L 1.000 (L 1.000) CTA L 1.000 (L 1.000) CTA L 1.000 (L 1.000) CTA L 1.000 (L 1.000)
26 5 GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) : GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000)
27 4 AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) : AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000)
28 5 TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) : TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000)
29 1 ATG (M) ATG (M) GTG (V) GTG (V) GTG (V) ATG (M) ATG (M) : ATG M 0.974 (M 0.974) ATG M 1.000 (M 1.000) GTG V 0.993 (V 0.993) GTG V 1.000 (V 1.000) ATG M 1.000 (M 1.000)
30 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000)
31 3 TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) : TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000)
32 3 GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) : GCC A 1.000 (A 1.000) GCC A 1.000 (A 1.000) GCC A 1.000 (A 1.000) GCC A 1.000 (A 1.000) GCC A 1.000 (A 1.000)
33 2 AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) : AAA K 1.000 (K 1.000) AAA K 1.000 (K 1.000) AAA K 1.000 (K 1.000) AAA K 1.000 (K 1.000) AAA K 1.000 (K 1.000)
34 5 TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) : TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000)
35 2 GAG (E) GAG (E) GAG (E) GAG (E) GAG (E) GAG (E) GAG (E) : GAG E 1.000 (E 1.000) GAG E 1.000 (E 1.000) GAG E 1.000 (E 1.000) GAG E 1.000 (E 1.000) GAG E 1.000 (E 1.000)
36 1 AGT (S) AGT (S) AGT (S) AGT (S) AGT (S) AGT (S) AGT (S) : AGT S 1.000 (S 1.000) AGT S 1.000 (S 1.000) AGT S 1.000 (S 1.000) AGT S 1.000 (S 1.000) AGT S 1.000 (S 1.000)
37 1 GGT (G) GGT (G) GGT (G) GGT (G) AAT (N) GAC (D) GAT (D) : GAT D 0.742 (D 0.743) GGT G 0.996 (G 0.996) GAT D 0.696 (D 0.696) GGT G 0.993 (G 0.993) GAT D 0.959 (D 0.999)
38 1 TAC (Y) TAT (Y) TAT (Y) TAT (Y) TAT (Y) TAT (Y) TAT (Y) : TAT Y 0.999 (Y 1.000) TAT Y 0.962 (Y 1.000) TAT Y 1.000 (Y 1.000) TAT Y 1.000 (Y 1.000) TAT Y 1.000 (Y 1.000)
39 4 AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) : AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000)
40 2 ACA (T) ACA (T) ACA (T) ACA (T) ACA (T) ACA (T) ACA (T) : ACA T 1.000 (T 1.000) ACA T 1.000 (T 1.000) ACA T 1.000 (T 1.000) ACA T 1.000 (T 1.000) ACA T 1.000 (T 1.000)
41 1 CGA (R) CGA (R) GAC (D) GAA (E) CAA (Q) CGT (R) CGT (R) : CGA R 0.977 (R 0.978) CGA R 1.000 (R 1.000) CAA Q 0.990 (Q 0.990) GAA E 0.992 (E 0.992) CGT R 1.000 (R 1.000)
42 3 GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) : GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000)
43 2 ACA (T) ACA (T) ACA (T) ACA (T) ACA (T) ACA (T) ACA (T) : ACA T 1.000 (T 1.000) ACA T 1.000 (T 1.000) ACA T 1.000 (T 1.000) ACA T 1.000 (T 1.000) ACA T 1.000 (T 1.000)
44 4 AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) : AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000)
45 2 TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) : TAC Y 1.000 (Y 1.000) TAC Y 1.000 (Y 1.000) TAC Y 1.000 (Y 1.000) TAC Y 1.000 (Y 1.000) TAC Y 1.000 (Y 1.000)
46 2 AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) : AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000)
47 1 GCT (A) CCT (P) CCT (P) CCT (P) CCT (P) CCT (P) CCT (P) : CCT P 1.000 (P 1.000) CCT P 0.998 (P 0.998) CCT P 1.000 (P 1.000) CCT P 1.000 (P 1.000) CCT P 1.000 (P 1.000)
48 5 GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) : GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000)
49 1 GAC (D) GAC (D) GAT (D) GAC (D) GAC (D) GAC (D) GAC (D) : GAC D 1.000 (D 1.000) GAC D 1.000 (D 1.000) GAC D 1.000 (D 1.000) GAC D 0.989 (D 1.000) GAC D 1.000 (D 1.000)
50 1 AGA (R) AGA (R) GAA (E) GAA (E) CAA (Q) CAA (Q) CAA (Q) : CAA Q 0.980 (Q 0.980) AGA R 0.994 (R 0.995) CAA Q 0.990 (Q 0.990) GAA E 0.998 (E 0.998) CAA Q 1.000 (Q 1.000)
51 3 AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) : AGC S 1.000 (S 1.000) AGC S 1.000 (S 1.000) AGC S 1.000 (S 1.000) AGC S 1.000 (S 1.000) AGC S 1.000 (S 1.000)
52 2 ACT (T) ACT (T) ACT (T) ACT (T) ACT (T) ACT (T) ACT (T) : ACT T 1.000 (T 1.000) ACT T 1.000 (T 1.000) ACT T 1.000 (T 1.000) ACT T 1.000 (T 1.000) ACT T 1.000 (T 1.000)
53 4 GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) : GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000)
54 1 TAT (Y) TAT (Y) TAT (Y) TAT (Y) TAT (Y) TAT (Y) TAT (Y) : TAT Y 1.000 (Y 1.000) TAT Y 1.000 (Y 1.000) TAT Y 1.000 (Y 1.000) TAT Y 1.000 (Y 1.000) TAT Y 1.000 (Y 1.000)
55 1 GGG (G) GGG (G) GGG (G) GGG (G) GGG (G) GGG (G) GGG (G) : GGG G 1.000 (G 1.000) GGG G 1.000 (G 1.000) GGG G 1.000 (G 1.000) GGG G 1.000 (G 1.000) GGG G 1.000 (G 1.000)
56 1 ATA (I) ATA (I) ATA (I) ATA (I) ATA (I) ATA (I) ATA (I) : ATA I 1.000 (I 1.000) ATA I 1.000 (I 1.000) ATA I 1.000 (I 1.000) ATA I 1.000 (I 1.000) ATA I 1.000 (I 1.000)
57 1 TTT (F) TTT (F) TTT (F) TTT (F) TTT (F) TTT (F) TTT (F) : TTT F 1.000 (F 1.000) TTT F 1.000 (F 1.000) TTT F 1.000 (F 1.000) TTT F 1.000 (F 1.000) TTT F 1.000 (F 1.000)
58 2 CAG (Q) CAG (Q) CAG (Q) CAG (Q) CAG (Q) CAG (Q) CAG (Q) : CAG Q 1.000 (Q 1.000) CAG Q 1.000 (Q 1.000) CAG Q 1.000 (Q 1.000) CAG Q 1.000 (Q 1.000) CAG Q 1.000 (Q 1.000)
59 2 ATC (I) ATC (I) ATC (I) ATC (I) ATC (I) ATC (I) ATC (I) : ATC I 1.000 (I 1.000) ATC I 1.000 (I 1.000) ATC I 1.000 (I 1.000) ATC I 1.000 (I 1.000) ATC I 1.000 (I 1.000)
60 2 AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) : AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000)
61 3 AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) : AGC S 1.000 (S 1.000) AGC S 1.000 (S 1.000) AGC S 1.000 (S 1.000) AGC S 1.000 (S 1.000) AGC S 1.000 (S 1.000)
62 1 CGC (R) CGC (R) CGC (R) CGC (R) CAC (H) CAC (H) CAC (H) : CAC H 0.742 (H 0.742) CGC R 0.999 (R 0.999) CAC H 0.748 (H 0.748) CGC R 0.998 (R 0.998) CAC H 1.000 (H 1.000)
63 1 TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAT (Y) TAT (Y) : TAC Y 0.994 (Y 1.000) TAC Y 1.000 (Y 1.000) TAC Y 1.000 (Y 1.000) TAC Y 1.000 (Y 1.000) TAT Y 0.997 (Y 1.000)
64 5 TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) : TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000)
65 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000)
66 1 AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) AAC (N) : AAT N 0.998 (N 1.000) AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000) AAT N 0.889 (N 1.000)
67 1 GAT (D) GAT (D) AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) : AAT N 0.970 (N 0.970) GAT D 0.994 (D 0.994) AAT N 0.999 (N 0.999) AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000)
68 3 GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) : GGC G 1.000 (G 1.000) GGC G 1.000 (G 1.000) GGC G 1.000 (G 1.000) GGC G 1.000 (G 1.000) GGC G 1.000 (G 1.000)
69 1 AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) AGA (R) AGA (R) : AAA K 0.992 (K 0.992) AAA K 1.000 (K 1.000) AAA K 1.000 (K 1.000) AAA K 1.000 (K 1.000) AGA R 0.998 (R 0.998)
70 1 ACC (T) ACC (T) ACC (T) ACC (T) ACC (T) ACC (T) ACC (T) : ACC T 1.000 (T 1.000) ACC T 1.000 (T 1.000) ACC T 1.000 (T 1.000) ACC T 1.000 (T 1.000) ACC T 1.000 (T 1.000)
71 2 CCA (P) CCA (P) CCA (P) CCA (P) CCA (P) CCA (P) CCA (P) : CCA P 1.000 (P 1.000) CCA P 1.000 (P 1.000) CCA P 1.000 (P 1.000) CCA P 1.000 (P 1.000) CCA P 1.000 (P 1.000)
72 5 GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) : GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000)
73 5 GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) : GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000)
74 2 GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) : GTT V 1.000 (V 1.000) GTT V 1.000 (V 1.000) GTT V 1.000 (V 1.000) GTT V 1.000 (V 1.000) GTT V 1.000 (V 1.000)
75 1 AAT (N) AAT (N) AAT (N) GAT (D) AAT (N) AAT (N) AAT (N) : AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000) AAT N 0.964 (N 0.964) AAT N 1.000 (N 1.000)
76 3 GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) : GCC A 1.000 (A 1.000) GCC A 1.000 (A 1.000) GCC A 1.000 (A 1.000) GCC A 1.000 (A 1.000) GCC A 1.000 (A 1.000)
77 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000)
78 1 CAT (H) CAT (H) CAT (H) CAT (H) CAT (H) CAT (H) CAT (H) : CAT H 1.000 (H 1.000) CAT H 1.000 (H 1.000) CAT H 1.000 (H 1.000) CAT H 1.000 (H 1.000) CAT H 1.000 (H 1.000)
79 1 TTA (L) TTA (L) ATA (I) ATA (I) ATA (I) ATA (I) ATA (I) : ATA I 0.997 (I 0.997) TTA L 1.000 (L 1.000) ATA I 1.000 (I 1.000) ATA I 1.000 (I 1.000) ATA I 1.000 (I 1.000)
80 1 TCC (S) TCC (S) TCC (S) TCC (S) TCC (S) TCC (S) TCC (S) : TCC S 1.000 (S 1.000) TCC S 1.000 (S 1.000) TCC S 1.000 (S 1.000) TCC S 1.000 (S 1.000) TCC S 1.000 (S 1.000)
81 1 TGC (C) TGC (C) TGC (C) TGC (C) TGC (C) TGC (C) TGC (C) : TGC C 1.000 (C 1.000) TGC C 1.000 (C 1.000) TGC C 1.000 (C 1.000) TGC C 1.000 (C 1.000) TGC C 1.000 (C 1.000)
82 1 AGT (S) AAT (N) AAT (N) AGT (S) AAT (N) AAT (N) AAT (N) : AAT N 0.998 (N 0.998) AAT N 0.957 (N 0.957) AAT N 0.999 (N 0.999) AAT N 0.963 (N 0.963) AAT N 1.000 (N 1.000)
83 3 GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) : GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000)
84 3 TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) : TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000) TTG L 1.000 (L 1.000)
85 2 CTG (L) CTG (L) CTG (L) CTG (L) CTG (L) CTG (L) CTG (L) : CTG L 1.000 (L 1.000) CTG L 1.000 (L 1.000) CTG L 1.000 (L 1.000) CTG L 1.000 (L 1.000) CTG L 1.000 (L 1.000)
86 3 CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) : CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000)
87 1 GAT (D) GAT (D) AAT (N) AAC (N) GAT (D) GAT (D) GAT (D) : GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 0.996 (D 0.997) AAT N 0.983 (N 0.993) GAT D 1.000 (D 1.000)
88 1 AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) GAC (D) GAC (D) : AAC N 0.993 (N 0.993) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) GAC D 0.998 (D 0.998)
89 2 ATC (I) ATC (I) ATC (I) ATC (I) ATC (I) ATC (I) ATC (I) : ATC I 1.000 (I 1.000) ATC I 1.000 (I 1.000) ATC I 1.000 (I 1.000) ATC I 1.000 (I 1.000) ATC I 1.000 (I 1.000)
90 1 GCT (A) GCC (A) GCT (A) GCT (A) GCT (A) ACT (T) ACT (T) : GCT A 0.994 (A 0.994) GCT A 0.985 (A 1.000) GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000) ACT T 0.998 (T 0.998)
91 1 GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) CAA (Q) GAA (E) : GAT D 0.997 (D 0.997) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAA E 0.995 (E 0.995)
92 3 GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) : GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000) GCT A 1.000 (A 1.000)
93 1 GTA (V) GTA (V) GTA (V) GTA (V) GTA (V) GTG (V) GTG (V) : GTA V 0.993 (V 1.000) GTA V 1.000 (V 1.000) GTA V 1.000 (V 1.000) GTA V 1.000 (V 1.000) GTG V 0.998 (V 1.000)
94 1 GCT (A) GCT (A) GCT (A) GCT (A) ACT (T) GCC (A) GCC (A) : GCT A 0.990 (A 0.998) GCT A 1.000 (A 1.000) GCT A 0.947 (A 0.947) GCT A 1.000 (A 1.000) GCC A 0.998 (A 1.000)
95 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000)
96 5 GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) : GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000)
97 2 AAG (K) AAG (K) AAG (K) AAG (K) AAG (K) AAG (K) AAG (K) : AAG K 1.000 (K 1.000) AAG K 1.000 (K 1.000) AAG K 1.000 (K 1.000) AAG K 1.000 (K 1.000) AAG K 1.000 (K 1.000)
98 2 AGG (R) AGG (R) AGG (R) AGG (R) AGG (R) AGG (R) AGG (R) : AGG R 1.000 (R 1.000) AGG R 1.000 (R 1.000) AGG R 1.000 (R 1.000) AGG R 1.000 (R 1.000) AGG R 1.000 (R 1.000)
99 2 GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) : GTT V 1.000 (V 1.000) GTT V 1.000 (V 1.000) GTT V 1.000 (V 1.000) GTT V 1.000 (V 1.000) GTT V 1.000 (V 1.000)
100 1 GTC (V) GTC (V) GTC (V) GTC (V) GTC (V) GTC (V) GTC (V) : GTC V 1.000 (V 1.000) GTC V 1.000 (V 1.000) GTC V 1.000 (V 1.000) GTC V 1.000 (V 1.000) GTC V 1.000 (V 1.000)
101 1 CGT (R) CGC (R) AGT (S) AGT (S) AGT (S) CGT (R) CGC (R) : CGT R 0.973 (R 0.993) CGT R 0.970 (R 1.000) AGT S 0.995 (S 0.996) AGT S 1.000 (S 1.000) CGT R 0.935 (R 1.000)
102 4 GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) : GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000)
103 2 CCA (P) CCA (P) CCA (P) CCA (P) CCA (P) CCA (P) CCA (P) : CCA P 1.000 (P 1.000) CCA P 1.000 (P 1.000) CCA P 1.000 (P 1.000) CCA P 1.000 (P 1.000) CCA P 1.000 (P 1.000)
104 3 CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) : CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000)
105 3 GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) : GGC G 1.000 (G 1.000) GGC G 1.000 (G 1.000) GGC G 1.000 (G 1.000) GGC G 1.000 (G 1.000) GGC G 1.000 (G 1.000)
106 1 ATT (I) ATT (I) ATT (I) GTT (V) ATT (I) ATT (I) ATT (I) : ATT I 1.000 (I 1.000) ATT I 1.000 (I 1.000) ATT I 1.000 (I 1.000) ATT I 0.978 (I 0.978) ATT I 1.000 (I 1.000)
107 1 AGA (R) AGA (R) CGA (R) CGA (R) AGA (R) AGA (R) AGG (R) : AGA R 0.999 (R 1.000) AGA R 1.000 (R 1.000) AGA R 0.996 (R 1.000) CGA R 0.996 (R 1.000) AGA R 0.921 (R 1.000)
108 5 GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) : GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000)
109 5 TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) : TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000)
110 1 GTG (V) GTG (V) GTG (V) GTG (V) GTG (V) GTG (V) GTG (V) : GTG V 1.000 (V 1.000) GTG V 1.000 (V 1.000) GTG V 1.000 (V 1.000) GTG V 1.000 (V 1.000) GTG V 1.000 (V 1.000)
111 5 GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) : GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000) GCA A 1.000 (A 1.000)
112 5 TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) : TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000) TGG W 1.000 (W 1.000)
113 1 AGA (R) AGA (R) AAA (K) AGA (R) AGA (R) AAA (K) AAA (K) : AGA R 0.990 (R 0.990) AGA R 1.000 (R 1.000) AGA R 0.997 (R 0.997) AGA R 0.962 (R 0.962) AAA K 0.998 (K 0.998)
114 1 AAT (N) AAT (N) AAG (K) AAT (N) AAT (N) GCT (A) GCT (A) : AAT N 0.984 (N 0.984) AAT N 1.000 (N 1.000) AAT N 1.000 (N 1.000) AAT N 0.987 (N 0.988) GCT A 0.998 (A 0.998)
115 1 CGT (R) CGT (R) CAC (H) CAC (H) CAC (H) CAT (H) CAT (H) : CAT H 0.952 (H 0.990) CGT R 0.998 (R 0.998) CAC H 0.998 (H 1.000) CAC H 1.000 (H 1.000) CAT H 1.000 (H 1.000)
116 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000)
117 3 CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) : CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000)
118 4 AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) : AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000) AAC N 1.000 (N 1.000)
119 1 AGA (R) AGA (R) AGA (R) AAA (K) AGA (R) AGA (R) AGA (R) : AGA R 1.000 (R 1.000) AGA R 1.000 (R 1.000) AGA R 1.000 (R 1.000) AGA R 0.975 (R 0.975) AGA R 1.000 (R 1.000)
120 4 GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) : GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000) GAT D 1.000 (D 1.000)
121 1 GTC (V) CTC (L) GTC (V) GTC (V) GTC (V) GTC (V) GTC (V) : GTC V 1.000 (V 1.000) GTC V 0.998 (V 0.998) GTC V 1.000 (V 1.000) GTC V 1.000 (V 1.000) GTC V 1.000 (V 1.000)
122 1 CGT (R) CGT (R) AGT (S) AGT (S) AGT (S) AGT (S) AGT (S) : AGT S 0.993 (S 0.993) CGT R 0.999 (R 1.000) AGT S 1.000 (S 1.000) AGT S 1.000 (S 1.000) AGT S 1.000 (S 1.000)
123 2 CAG (Q) CAG (Q) CAG (Q) CAG (Q) CAG (Q) CAG (Q) CAG (Q) : CAG Q 1.000 (Q 1.000) CAG Q 1.000 (Q 1.000) CAG Q 1.000 (Q 1.000) CAG Q 1.000 (Q 1.000) CAG Q 1.000 (Q 1.000)
124 1 TAT (Y) TAT (Y) TAT (Y) TAC (Y) TAT (Y) TAT (Y) TAT (Y) : TAT Y 1.000 (Y 1.000) TAT Y 1.000 (Y 1.000) TAT Y 1.000 (Y 1.000) TAT Y 0.993 (Y 1.000) TAT Y 1.000 (Y 1.000)
125 1 GTT (V) ATT (I) GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) : GTT V 1.000 (V 1.000) GTT V 0.988 (V 0.988) GTT V 1.000 (V 1.000) GTT V 1.000 (V 1.000) GTT V 1.000 (V 1.000)
126 1 CAA (Q) CAA (Q) GAA (E) AAA (K) CAA (Q) CAA (Q) CAA (Q) : CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000) CAA Q 1.000 (Q 1.000) GAA E 0.517 (E 0.517) CAA Q 1.000 (Q 1.000)
127 1 GGT (G) GGT (G) GGT (G) GGT (G) GGT (G) GGT (G) GGT (G) : GGT G 1.000 (G 1.000) GGT G 1.000 (G 1.000) GGT G 1.000 (G 1.000) GGT G 1.000 (G 1.000) GGT G 1.000 (G 1.000)
128 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000) TGT C 1.000 (C 1.000)
129 5 GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) : GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000) GGA G 1.000 (G 1.000)
130 1 GTG (V) GTA (V) GTA (V) GTG (V) GTG (V) GTA (V) GTA (V) : GTG V 0.797 (V 1.000) GTG V 0.795 (V 1.000) GTG V 0.942 (V 1.000) GTG V 0.937 (V 1.000) GTA V 0.998 (V 1.000)
Summary of changes along branches.
Check root for directions of change.
Branch 1: 8..9 (n= 8.5 s= 0.5)
17 L 0.871 -> M 1.000
37 D 0.743 -> G 0.996
50 Q 0.980 -> R 0.995
62 H 0.742 -> R 0.999
67 N 0.970 -> D 0.994
79 I 0.997 -> L 1.000
115 H 0.990 -> R 0.998
122 S 0.993 -> R 1.000
Branch 2: 9..1 (Hsa_Human) (n= 2.0 s= 1.0)
47 P 0.998 -> A
82 N 0.957 -> S
Branch 3: 9..2 (Hla_gibbon) (n= 2.0 s= 3.0)
121 V 0.998 -> L
125 V 0.988 -> I
Branch 4: 8..10 (n= 4.0 s= 1.0)
2 V 0.967 -> I 0.992
29 M 0.974 -> V 0.993
41 R 0.978 -> Q 0.990
101 R 0.993 -> S 0.996
Branch 5: 10..11 (n= 9.0 s= 1.0)
14 R 0.998 -> K 0.994
21 R 0.998 -> K 0.995
23 I 0.999 -> V 0.996
37 D 0.696 -> G 0.993
41 Q 0.990 -> E 0.992
50 Q 0.990 -> E 0.998
62 H 0.748 -> R 0.998
87 D 0.997 -> N 0.993
126 Q 1.000 -> E 0.517
Branch 6: 11..3 (Cgu/Can_colobus) (n= 3.0 s= 2.0)
41 E 0.992 -> D
113 R 0.962 -> K
114 N 0.988 -> K
Branch 7: 11..4 (Pne_langur) (n= 5.0 s= 2.0)
75 N 0.964 -> D
82 N 0.963 -> S
106 I 0.978 -> V
119 R 0.975 -> K
126 E 0.517 -> K
Branch 8: 10..5 (Mmu_rhesus) (n= 2.0 s= 0.0)
37 D 0.696 -> N
94 A 0.947 -> T
Branch 9: 8..12 (n= 8.0 s= 6.0)
15 L 1.000 -> F 0.990
69 K 0.992 -> R 0.998
88 N 0.993 -> D 0.998
90 A 0.994 -> T 0.998
91 D 0.997 -> E 0.995
113 R 0.990 -> K 0.998
114 N 0.984 -> A 0.998
Branch 10: 12..6 (Ssc_squirrelM) (n= 3.0 s= 2.0)
15 F 0.990 -> L
17 L 0.871 -> M
91 E 0.995 -> Q
Branch 11: 12..7 (Cja_marmoset) (n= 0.0 s= 3.0)
List of extant and reconstructed sequences
Hsa_Human AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA ATG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GGT TAC AAC ACA CGA GCT ACA AAC TAC AAT GCT GGA GAC AGA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CGC TAC TGG TGT AAT GAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT TTA TCC TGC AGT GCT TTG CTG CAA GAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC CGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AGA AAT CGT TGT CAA AAC AGA GAT GTC CGT CAG TAT GTT CAA GGT TGT GGA GTG
Hla_gibbon AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA ATG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GGT TAT AAC ACA CGA GCT ACA AAC TAC AAT CCT GGA GAC AGA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CGC TAC TGG TGT AAT GAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT TTA TCC TGC AAT GCT TTG CTG CAA GAT AAC ATC GCC GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC CGC GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AGA AAT CGT TGT CAA AAC AGA GAT CTC CGT CAG TAT ATT CAA GGT TGT GGA GTA
Cgu/Can_colobus AAG ATC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AAA TTG GGA CTG GAT GGC TAC AAG GGA GTC AGC CTA GCA AAC TGG GTG TGT TTG GCC AAA TGG GAG AGT GGT TAT AAC ACA GAC GCT ACA AAC TAC AAT CCT GGA GAT GAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CGC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA AAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC AGT GAT CCA CAA GGC ATT CGA GCA TGG GTG GCA TGG AAA AAG CAC TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT GAA GGT TGT GGA GTA
Pne_langur AAG ATC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AAA TTG GGA CTG GAT GGC TAC AAG GGA GTC AGC CTA GCA AAC TGG GTG TGT TTG GCC AAA TGG GAG AGT GGT TAT AAC ACA GAA GCT ACA AAC TAC AAT CCT GGA GAC GAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CGC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT GAT GCC TGT CAT ATA TCC TGC AGT GCT TTG CTG CAA AAC AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC AGT GAT CCA CAA GGC GTT CGA GCA TGG GTG GCA TGG AGA AAT CAC TGT CAA AAC AAA GAT GTC AGT CAG TAC GTT AAA GGT TGT GGA GTG
Mmu_rhesus AAG ATC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA CTG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG GTG TGT TTG GCC AAA TGG GAG AGT AAT TAT AAC ACA CAA GCT ACA AAC TAC AAT CCT GGA GAC CAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CAC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA GAT AAC ATC GCT GAT GCT GTA ACT TGT GCA AAG AGG GTT GTC AGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AGA AAT CAC TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT CAA GGT TGT GGA GTG
Ssc_squirrelM AAG GTC TTC GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGG CTT GGA ATG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GAC TAT AAC ACA CGT GCT ACA AAC TAC AAT CCT GGA GAC CAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CAC TAT TGG TGT AAT AAT GGC AGA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA GAT GAC ATC ACT CAA GCT GTG GCC TGT GCA AAG AGG GTT GTC CGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AAA GCT CAT TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT CAA GGT TGT GGA GTA
Cja_marmoset AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGG TTT GGA CTG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GAT TAT AAC ACA CGT GCT ACA AAC TAC AAT CCT GGA GAC CAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CAC TAT TGG TGT AAC AAT GGC AGA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA GAT GAC ATC ACT GAA GCT GTG GCC TGT GCA AAG AGG GTT GTC CGC GAT CCA CAA GGC ATT AGG GCA TGG GTG GCA TGG AAA GCT CAT TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT CAA GGT TGT GGA GTA
node #8 AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA CTG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GAT TAT AAC ACA CGA GCT ACA AAC TAC AAT CCT GGA GAC CAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CAC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA GAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC CGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AGA AAT CAT TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT CAA GGT TGT GGA GTG
node #9 AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA ATG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GGT TAT AAC ACA CGA GCT ACA AAC TAC AAT CCT GGA GAC AGA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CGC TAC TGG TGT AAT GAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT TTA TCC TGC AAT GCT TTG CTG CAA GAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC CGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AGA AAT CGT TGT CAA AAC AGA GAT GTC CGT CAG TAT GTT CAA GGT TGT GGA GTG
node #10 AAG ATC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA CTG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG GTG TGT TTG GCC AAA TGG GAG AGT GAT TAT AAC ACA CAA GCT ACA AAC TAC AAT CCT GGA GAC CAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CAC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA GAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC AGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AGA AAT CAC TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT CAA GGT TGT GGA GTG
node #11 AAG ATC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AAA TTG GGA CTG GAT GGC TAC AAG GGA GTC AGC CTA GCA AAC TGG GTG TGT TTG GCC AAA TGG GAG AGT GGT TAT AAC ACA GAA GCT ACA AAC TAC AAT CCT GGA GAC GAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CGC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA AAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC AGT GAT CCA CAA GGC ATT CGA GCA TGG GTG GCA TGG AGA AAT CAC TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT GAA GGT TGT GGA GTG
node #12 AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGG TTT GGA CTG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GAT TAT AAC ACA CGT GCT ACA AAC TAC AAT CCT GGA GAC CAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CAC TAT TGG TGT AAT AAT GGC AGA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA GAT GAC ATC ACT GAA GCT GTG GCC TGT GCA AAG AGG GTT GTC CGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AAA GCT CAT TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT CAA GGT TGT GGA GTA
Overall accuracy of the 5 ancestral sequences:
0.99108 0.99716 0.99439 0.99393 0.99633
for a site.
0.27875 0.67341 0.43633 0.37872 0.60699
for the sequence.
Amino acid sequences inferred by codonml.
Node #8 KVFERCELAR TLKRLGLDGY RGISLANWMC LAKWESDYNT RATNYNPGDQ STDYGIFQIN SHYWCNNGKT PGAVNACHIS CNALLQDNIA DAVACAKRVV RDPQGIRAWV AWRNHCQNRD VSQYVQGCGV
Node #9 KVFERCELAR TLKRLGMDGY RGISLANWMC LAKWESGYNT RATNYNPGDR STDYGIFQIN SRYWCNDGKT PGAVNACHLS CNALLQDNIA DAVACAKRVV RDPQGIRAWV AWRNRCQNRD VRQYVQGCGV
Node #10 KIFERCELAR TLKRLGLDGY RGISLANWVC LAKWESDYNT QATNYNPGDQ STDYGIFQIN SHYWCNNGKT PGAVNACHIS CNALLQDNIA DAVACAKRVV SDPQGIRAWV AWRNHCQNRD VSQYVQGCGV
Node #11 KIFERCELAR TLKKLGLDGY KGVSLANWVC LAKWESGYNT EATNYNPGDE STDYGIFQIN SRYWCNNGKT PGAVNACHIS CNALLQNNIA DAVACAKRVV SDPQGIRAWV AWRNHCQNRD VSQYVEGCGV
Node #12 KVFERCELAR TLKRFGLDGY RGISLANWMC LAKWESDYNT RATNYNPGDQ STDYGIFQIN SHYWCNNGRT PGAVNACHIS CNALLQDDIT EAVACAKRVV RDPQGIRAWV AWKAHCQNRD VSQYVQGCGV
Changes at sites (syn nonsyn).
1 (0.0 0.0)
2 GTC.ATC (0.0 1.0)
3 TTT.TTC (1.0 0.0)
4 (0.0 0.0)
5 (0.0 0.0)
6 (0.0 0.0)
7 (0.0 0.0)
8 (0.0 0.0)
9 (0.0 0.0)
10 (0.0 0.0)
11 (0.0 0.0)
12 (0.0 0.0)
13 (0.0 0.0)
14 AGA.AAA AGA.AGG (1.0 1.0)
15 TTT.CTT TTG.TTT (0.0 2.0)
16 (0.0 0.0)
17 CTG.ATG CTG.ATG (0.0 2.0)
18 (0.0 0.0)
19 (0.0 0.0)
20 (0.0 0.0)
21 AGG.AAG (0.0 1.0)
22 (0.0 0.0)
23 ATC.GTC (0.0 1.0)
24 (0.0 0.0)
25 (0.0 0.0)
26 (0.0 0.0)
27 (0.0 0.0)
28 (0.0 0.0)
29 ATG.GTG (0.0 1.0)
30 (0.0 0.0)
31 (0.0 0.0)
32 (0.0 0.0)
33 (0.0 0.0)
34 (0.0 0.0)
35 (0.0 0.0)
36 (0.0 0.0)
37 GAT.AAT GAT.GAC GAT.GGT GAT.GGT (1.0 3.0)
38 TAT.TAC (1.0 0.0)
39 (0.0 0.0)
40 (0.0 0.0)
41 GAA.GAC CGA.CAA CAA.GAA CGA.CGT (1.0 3.0)
42 (0.0 0.0)
43 (0.0 0.0)
44 (0.0 0.0)
45 (0.0 0.0)
46 (0.0 0.0)
47 CCT.GCT (0.0 1.0)
48 (0.0 0.0)
49 GAC.GAT (1.0 0.0)
50 CAA.AGA CAA.GAA (0.5 2.5)
51 (0.0 0.0)
52 (0.0 0.0)
53 (0.0 0.0)
54 (0.0 0.0)
55 (0.0 0.0)
56 (0.0 0.0)
57 (0.0 0.0)
58 (0.0 0.0)
59 (0.0 0.0)
60 (0.0 0.0)
61 (0.0 0.0)
62 CAC.CGC CAC.CGC (0.0 2.0)
63 TAC.TAT (1.0 0.0)
64 (0.0 0.0)
65 (0.0 0.0)
66 AAT.AAC (1.0 0.0)
67 AAT.GAT (0.0 1.0)
68 (0.0 0.0)
69 AAA.AGA (0.0 1.0)
70 (0.0 0.0)
71 (0.0 0.0)
72 (0.0 0.0)
73 (0.0 0.0)
74 (0.0 0.0)
75 AAT.GAT (0.0 1.0)
76 (0.0 0.0)
77 (0.0 0.0)
78 (0.0 0.0)
79 ATA.TTA (0.0 1.0)
80 (0.0 0.0)
81 (0.0 0.0)
82 AAT.AGT AAT.AGT (0.0 2.0)
83 (0.0 0.0)
84 (0.0 0.0)
85 (0.0 0.0)
86 (0.0 0.0)
87 AAT.AAC GAT.AAT (1.0 1.0)
88 AAC.GAC (0.0 1.0)
89 (0.0 0.0)
90 GCT.GCC GCT.ACT (1.0 1.0)
91 GAA.CAA GAT.GAA (0.0 2.0)
92 (0.0 0.0)
93 GTA.GTG (1.0 0.0)
94 GCT.ACT GCT.GCC (1.0 1.0)
95 (0.0 0.0)
96 (0.0 0.0)
97 (0.0 0.0)
98 (0.0 0.0)
99 (0.0 0.0)
100 (0.0 0.0)
101 CGT.CGC CGT.CGC CGT.AGT (2.0 1.0)
102 (0.0 0.0)
103 (0.0 0.0)
104 (0.0 0.0)
105 (0.0 0.0)
106 ATT.GTT (0.0 1.0)
107 AGA.AGG AGA.CGA (2.0 0.0)
108 (0.0 0.0)
109 (0.0 0.0)
110 (0.0 0.0)
111 (0.0 0.0)
112 (0.0 0.0)
113 AGA.AAA AGA.AAA (0.0 2.0)
114 AAT.AAG AAT.GCT (0.0 3.0)
115 CAT.CGT CAT.CAC (1.0 1.0)
116 (0.0 0.0)
117 (0.0 0.0)
118 (0.0 0.0)
119 AGA.AAA (0.0 1.0)
120 (0.0 0.0)
121 GTC.CTC (0.0 1.0)
122 AGT.CGT (0.0 1.0)
123 (0.0 0.0)
124 TAT.TAC (1.0 0.0)
125 GTT.ATT (0.0 1.0)
126 GAA.AAA CAA.GAA (0.0 2.0)
127 (0.0 0.0)
128 (0.0 0.0)
129 (0.0 0.0)
130 GTG.GTA GTG.GTA GTG.GTA (3.0 0.0)
(2) Joint reconstruction of ancestral sequences (eqn. 2 in Yang et al. 1995 Genetics 141:1641-1650), using the algorithm of Pupko et al. (2000 Mol Biol Evol 17:890-896).
Listed by site, reconstruction (prob.)
Site Freq Data:
1 2 AAG (K) AAG (K) AAG (K) AAG (K) AAG (K) AAG (K) AAG (K) : AAG AAG AAG AAG AAG (0.9999)
2 1 GTC (V) GTC (V) ATC (I) ATC (I) ATC (I) GTC (V) GTC (V) : GTC GTC ATC ATC GTC (0.9589)
3 1 TTT (F) TTT (F) TTT (F) TTT (F) TTT (F) TTC (F) TTT (F) : TTT TTT TTT TTT TTT (0.9846)
4 1 GAA (E) GAA (E) GAA (E) GAA (E) GAA (E) GAA (E) GAA (E) : GAA GAA GAA GAA GAA (0.9999)
5 2 AGG (R) AGG (R) AGG (R) AGG (R) AGG (R) AGG (R) AGG (R) : AGG AGG AGG AGG AGG (1.0000)
6 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT TGT TGT TGT TGT (1.0000)
7 2 GAG (E) GAG (E) GAG (E) GAG (E) GAG (E) GAG (E) GAG (E) : GAG GAG GAG GAG GAG (0.9999)
8 3 TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) : TTG TTG TTG TTG TTG (1.0000)
9 3 GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) : GCC GCC GCC GCC GCC (1.0000)
10 1 AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) AGA (R) : AGA AGA AGA AGA AGA (0.9999)
11 2 ACT (T) ACT (T) ACT (T) ACT (T) ACT (T) ACT (T) ACT (T) : ACT ACT ACT ACT ACT (1.0000)
12 2 CTG (L) CTG (L) CTG (L) CTG (L) CTG (L) CTG (L) CTG (L) : CTG CTG CTG CTG CTG (1.0000)
13 2 AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) : AAA AAA AAA AAA AAA (0.9999)
14 1 AGA (R) AGA (R) AAA (K) AAA (K) AGA (R) AGG (R) AGG (R) : AGA AGA AGA AAA AGG (0.9789)
15 1 TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) CTT (L) TTT (F) : TTG TTG TTG TTG TTT (0.9894)
16 5 GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) : GGA GGA GGA GGA GGA (0.9999)
17 1 ATG (M) ATG (M) CTG (L) CTG (L) CTG (L) ATG (M) CTG (L) : CTG ATG CTG CTG CTG (0.8701)
18 4 GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) : GAT GAT GAT GAT GAT (0.9998)
19 3 GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) : GGC GGC GGC GGC GGC (0.9999)
20 2 TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) : TAC TAC TAC TAC TAC (1.0000)
21 1 AGG (R) AGG (R) AAG (K) AAG (K) AGG (R) AGG (R) AGG (R) : AGG AGG AGG AAG AGG (0.9935)
22 5 GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) : GGA GGA GGA GGA GGA (0.9999)
23 1 ATC (I) ATC (I) GTC (V) GTC (V) ATC (I) ATC (I) ATC (I) : ATC ATC ATC GTC ATC (0.9950)
24 3 AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) : AGC AGC AGC AGC AGC (0.9999)
25 1 CTA (L) CTA (L) CTA (L) CTA (L) CTA (L) CTA (L) CTA (L) : CTA CTA CTA CTA CTA (1.0000)
26 5 GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) : GCA GCA GCA GCA GCA (1.0000)
27 4 AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) : AAC AAC AAC AAC AAC (0.9999)
28 5 TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) : TGG TGG TGG TGG TGG (1.0000)
29 1 ATG (M) ATG (M) GTG (V) GTG (V) GTG (V) ATG (M) ATG (M) : ATG ATG GTG GTG ATG (0.9668)
30 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT TGT TGT TGT TGT (1.0000)
31 3 TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) : TTG TTG TTG TTG TTG (1.0000)
32 3 GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) : GCC GCC GCC GCC GCC (1.0000)
33 2 AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) : AAA AAA AAA AAA AAA (0.9999)
34 5 TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) : TGG TGG TGG TGG TGG (1.0000)
35 2 GAG (E) GAG (E) GAG (E) GAG (E) GAG (E) GAG (E) GAG (E) : GAG GAG GAG GAG GAG (0.9999)
36 1 AGT (S) AGT (S) AGT (S) AGT (S) AGT (S) AGT (S) AGT (S) : AGT AGT AGT AGT AGT (0.9998)
37 1 GGT (G) GGT (G) GGT (G) GGT (G) AAT (N) GAC (D) GAT (D) : GAT GGT GAT GGT GAT (0.6376)
38 1 TAC (Y) TAT (Y) TAT (Y) TAT (Y) TAT (Y) TAT (Y) TAT (Y) : TAT TAT TAT TAT TAT (0.9616)
39 4 AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) : AAC AAC AAC AAC AAC (0.9999)
40 2 ACA (T) ACA (T) ACA (T) ACA (T) ACA (T) ACA (T) ACA (T) : ACA ACA ACA ACA ACA (1.0000)
41 1 CGA (R) CGA (R) GAC (D) GAA (E) CAA (Q) CGT (R) CGT (R) : CGA CGA CAA GAA CGT (0.9586)
42 3 GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) : GCT GCT GCT GCT GCT (1.0000)
43 2 ACA (T) ACA (T) ACA (T) ACA (T) ACA (T) ACA (T) ACA (T) : ACA ACA ACA ACA ACA (1.0000)
44 4 AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) : AAC AAC AAC AAC AAC (0.9999)
45 2 TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) : TAC TAC TAC TAC TAC (1.0000)
46 2 AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) : AAT AAT AAT AAT AAT (0.9998)
47 1 GCT (A) CCT (P) CCT (P) CCT (P) CCT (P) CCT (P) CCT (P) : CCT CCT CCT CCT CCT (0.9979)
48 5 GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) : GGA GGA GGA GGA GGA (0.9999)
49 1 GAC (D) GAC (D) GAT (D) GAC (D) GAC (D) GAC (D) GAC (D) : GAC GAC GAC GAC GAC (0.9890)
50 1 AGA (R) AGA (R) GAA (E) GAA (E) CAA (Q) CAA (Q) CAA (Q) : CAA AGA CAA GAA CAA (0.9726)
51 3 AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) : AGC AGC AGC AGC AGC (0.9999)
52 2 ACT (T) ACT (T) ACT (T) ACT (T) ACT (T) ACT (T) ACT (T) : ACT ACT ACT ACT ACT (1.0000)
53 4 GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) : GAT GAT GAT GAT GAT (0.9998)
54 1 TAT (Y) TAT (Y) TAT (Y) TAT (Y) TAT (Y) TAT (Y) TAT (Y) : TAT TAT TAT TAT TAT (1.0000)
55 1 GGG (G) GGG (G) GGG (G) GGG (G) GGG (G) GGG (G) GGG (G) : GGG GGG GGG GGG GGG (1.0000)
56 1 ATA (I) ATA (I) ATA (I) ATA (I) ATA (I) ATA (I) ATA (I) : ATA ATA ATA ATA ATA (1.0000)
57 1 TTT (F) TTT (F) TTT (F) TTT (F) TTT (F) TTT (F) TTT (F) : TTT TTT TTT TTT TTT (1.0000)
58 2 CAG (Q) CAG (Q) CAG (Q) CAG (Q) CAG (Q) CAG (Q) CAG (Q) : CAG CAG CAG CAG CAG (1.0000)
59 2 ATC (I) ATC (I) ATC (I) ATC (I) ATC (I) ATC (I) ATC (I) : ATC ATC ATC ATC ATC (1.0000)
60 2 AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) : AAT AAT AAT AAT AAT (0.9998)
61 3 AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) AGC (S) : AGC AGC AGC AGC AGC (0.9999)
62 1 CGC (R) CGC (R) CGC (R) CGC (R) CAC (H) CAC (H) CAC (H) : CAC CGC CAC CGC CAC (0.7383)
63 1 TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAC (Y) TAT (Y) TAT (Y) : TAC TAC TAC TAC TAT (0.9908)
64 5 TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) : TGG TGG TGG TGG TGG (1.0000)
65 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT TGT TGT TGT TGT (1.0000)
66 1 AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) AAC (N) : AAT AAT AAT AAT AAT (0.8888)
67 1 GAT (D) GAT (D) AAT (N) AAT (N) AAT (N) AAT (N) AAT (N) : AAT GAT AAT AAT AAT (0.9642)
68 3 GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) : GGC GGC GGC GGC GGC (0.9999)
69 1 AAA (K) AAA (K) AAA (K) AAA (K) AAA (K) AGA (R) AGA (R) : AAA AAA AAA AAA AGA (0.9899)
70 1 ACC (T) ACC (T) ACC (T) ACC (T) ACC (T) ACC (T) ACC (T) : ACC ACC ACC ACC ACC (1.0000)
71 2 CCA (P) CCA (P) CCA (P) CCA (P) CCA (P) CCA (P) CCA (P) : CCA CCA CCA CCA CCA (1.0000)
72 5 GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) : GGA GGA GGA GGA GGA (0.9999)
73 5 GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) : GCA GCA GCA GCA GCA (1.0000)
74 2 GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) : GTT GTT GTT GTT GTT (0.9999)
75 1 AAT (N) AAT (N) AAT (N) GAT (D) AAT (N) AAT (N) AAT (N) : AAT AAT AAT AAT AAT (0.9638)
76 3 GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) GCC (A) : GCC GCC GCC GCC GCC (1.0000)
77 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT TGT TGT TGT TGT (1.0000)
78 1 CAT (H) CAT (H) CAT (H) CAT (H) CAT (H) CAT (H) CAT (H) : CAT CAT CAT CAT CAT (1.0000)
79 1 TTA (L) TTA (L) ATA (I) ATA (I) ATA (I) ATA (I) ATA (I) : ATA TTA ATA ATA ATA (0.9961)
80 1 TCC (S) TCC (S) TCC (S) TCC (S) TCC (S) TCC (S) TCC (S) : TCC TCC TCC TCC TCC (1.0000)
81 1 TGC (C) TGC (C) TGC (C) TGC (C) TGC (C) TGC (C) TGC (C) : TGC TGC TGC TGC TGC (1.0000)
82 1 AGT (S) AAT (N) AAT (N) AGT (S) AAT (N) AAT (N) AAT (N) : AAT AAT AAT AAT AAT (0.9224)
83 3 GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) : GCT GCT GCT GCT GCT (1.0000)
84 3 TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) TTG (L) : TTG TTG TTG TTG TTG (1.0000)
85 2 CTG (L) CTG (L) CTG (L) CTG (L) CTG (L) CTG (L) CTG (L) : CTG CTG CTG CTG CTG (1.0000)
86 3 CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) : CAA CAA CAA CAA CAA (1.0000)
87 1 GAT (D) GAT (D) AAT (N) AAC (N) GAT (D) GAT (D) GAT (D) : GAT GAT GAT AAT GAT (0.9799)
88 1 AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) GAC (D) GAC (D) : AAC AAC AAC AAC GAC (0.9905)
89 2 ATC (I) ATC (I) ATC (I) ATC (I) ATC (I) ATC (I) ATC (I) : ATC ATC ATC ATC ATC (1.0000)
90 1 GCT (A) GCC (A) GCT (A) GCT (A) GCT (A) ACT (T) ACT (T) : GCT GCT GCT GCT ACT (0.9782)
91 1 GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) CAA (Q) GAA (E) : GAT GAT GAT GAT GAA (0.9916)
92 3 GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) GCT (A) : GCT GCT GCT GCT GCT (1.0000)
93 1 GTA (V) GTA (V) GTA (V) GTA (V) GTA (V) GTG (V) GTG (V) : GTA GTA GTA GTA GTG (0.9911)
94 1 GCT (A) GCT (A) GCT (A) GCT (A) ACT (T) GCC (A) GCC (A) : GCT GCT GCT GCT GCC (0.9373)
95 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT TGT TGT TGT TGT (1.0000)
96 5 GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) : GCA GCA GCA GCA GCA (1.0000)
97 2 AAG (K) AAG (K) AAG (K) AAG (K) AAG (K) AAG (K) AAG (K) : AAG AAG AAG AAG AAG (0.9999)
98 2 AGG (R) AGG (R) AGG (R) AGG (R) AGG (R) AGG (R) AGG (R) : AGG AGG AGG AGG AGG (1.0000)
99 2 GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) : GTT GTT GTT GTT GTT (0.9999)
100 1 GTC (V) GTC (V) GTC (V) GTC (V) GTC (V) GTC (V) GTC (V) : GTC GTC GTC GTC GTC (1.0000)
101 1 CGT (R) CGC (R) AGT (S) AGT (S) AGT (S) CGT (R) CGC (R) : CGT CGT AGT AGT CGT (0.9153)
102 4 GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) : GAT GAT GAT GAT GAT (0.9998)
103 2 CCA (P) CCA (P) CCA (P) CCA (P) CCA (P) CCA (P) CCA (P) : CCA CCA CCA CCA CCA (1.0000)
104 3 CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) : CAA CAA CAA CAA CAA (1.0000)
105 3 GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) GGC (G) : GGC GGC GGC GGC GGC (0.9999)
106 1 ATT (I) ATT (I) ATT (I) GTT (V) ATT (I) ATT (I) ATT (I) : ATT ATT ATT ATT ATT (0.9779)
107 1 AGA (R) AGA (R) CGA (R) CGA (R) AGA (R) AGA (R) AGG (R) : AGA AGA AGA CGA AGA (0.9144)
108 5 GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) : GCA GCA GCA GCA GCA (1.0000)
109 5 TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) : TGG TGG TGG TGG TGG (1.0000)
110 1 GTG (V) GTG (V) GTG (V) GTG (V) GTG (V) GTG (V) GTG (V) : GTG GTG GTG GTG GTG (1.0000)
111 5 GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) GCA (A) : GCA GCA GCA GCA GCA (1.0000)
112 5 TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) TGG (W) : TGG TGG TGG TGG TGG (1.0000)
113 1 AGA (R) AGA (R) AAA (K) AGA (R) AGA (R) AAA (K) AAA (K) : AGA AGA AGA AGA AAA (0.9527)
114 1 AAT (N) AAT (N) AAG (K) AAT (N) AAT (N) GCT (A) GCT (A) : AAT AAT AAT AAT GCT (0.9702)
115 1 CGT (R) CGT (R) CAC (H) CAC (H) CAC (H) CAT (H) CAT (H) : CAT CGT CAC CAC CAT (0.9482)
116 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT TGT TGT TGT TGT (1.0000)
117 3 CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) CAA (Q) : CAA CAA CAA CAA CAA (1.0000)
118 4 AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) AAC (N) : AAC AAC AAC AAC AAC (0.9999)
119 1 AGA (R) AGA (R) AGA (R) AAA (K) AGA (R) AGA (R) AGA (R) : AGA AGA AGA AGA AGA (0.9748)
120 4 GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) GAT (D) : GAT GAT GAT GAT GAT (0.9998)
121 1 GTC (V) CTC (L) GTC (V) GTC (V) GTC (V) GTC (V) GTC (V) : GTC GTC GTC GTC GTC (0.9981)
122 1 CGT (R) CGT (R) AGT (S) AGT (S) AGT (S) AGT (S) AGT (S) : AGT CGT AGT AGT AGT (0.9920)
123 2 CAG (Q) CAG (Q) CAG (Q) CAG (Q) CAG (Q) CAG (Q) CAG (Q) : CAG CAG CAG CAG CAG (1.0000)
124 1 TAT (Y) TAT (Y) TAT (Y) TAC (Y) TAT (Y) TAT (Y) TAT (Y) : TAT TAT TAT TAT TAT (0.9932)
125 1 GTT (V) ATT (I) GTT (V) GTT (V) GTT (V) GTT (V) GTT (V) : GTT GTT GTT GTT GTT (0.9882)
126 1 CAA (Q) CAA (Q) GAA (E) AAA (K) CAA (Q) CAA (Q) CAA (Q) : CAA CAA CAA GAA CAA (0.5165)
127 1 GGT (G) GGT (G) GGT (G) GGT (G) GGT (G) GGT (G) GGT (G) : GGT GGT GGT GGT GGT (0.9998)
128 7 TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) TGT (C) : TGT TGT TGT TGT TGT (1.0000)
129 5 GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) GGA (G) : GGA GGA GGA GGA GGA (0.9999)
130 1 GTG (V) GTA (V) GTA (V) GTG (V) GTG (V) GTA (V) GTA (V) : GTG GTG GTG GTG GTA (0.7827)
List of extant and reconstructed sequences
Hsa_Human AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA ATG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GGT TAC AAC ACA CGA GCT ACA AAC TAC AAT GCT GGA GAC AGA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CGC TAC TGG TGT AAT GAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT TTA TCC TGC AGT GCT TTG CTG CAA GAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC CGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AGA AAT CGT TGT CAA AAC AGA GAT GTC CGT CAG TAT GTT CAA GGT TGT GGA GTG
Hla_gibbon AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA ATG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GGT TAT AAC ACA CGA GCT ACA AAC TAC AAT CCT GGA GAC AGA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CGC TAC TGG TGT AAT GAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT TTA TCC TGC AAT GCT TTG CTG CAA GAT AAC ATC GCC GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC CGC GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AGA AAT CGT TGT CAA AAC AGA GAT CTC CGT CAG TAT ATT CAA GGT TGT GGA GTA
Cgu/Can_colobus AAG ATC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AAA TTG GGA CTG GAT GGC TAC AAG GGA GTC AGC CTA GCA AAC TGG GTG TGT TTG GCC AAA TGG GAG AGT GGT TAT AAC ACA GAC GCT ACA AAC TAC AAT CCT GGA GAT GAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CGC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA AAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC AGT GAT CCA CAA GGC ATT CGA GCA TGG GTG GCA TGG AAA AAG CAC TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT GAA GGT TGT GGA GTA
Pne_langur AAG ATC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AAA TTG GGA CTG GAT GGC TAC AAG GGA GTC AGC CTA GCA AAC TGG GTG TGT TTG GCC AAA TGG GAG AGT GGT TAT AAC ACA GAA GCT ACA AAC TAC AAT CCT GGA GAC GAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CGC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT GAT GCC TGT CAT ATA TCC TGC AGT GCT TTG CTG CAA AAC AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC AGT GAT CCA CAA GGC GTT CGA GCA TGG GTG GCA TGG AGA AAT CAC TGT CAA AAC AAA GAT GTC AGT CAG TAC GTT AAA GGT TGT GGA GTG
Mmu_rhesus AAG ATC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA CTG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG GTG TGT TTG GCC AAA TGG GAG AGT AAT TAT AAC ACA CAA GCT ACA AAC TAC AAT CCT GGA GAC CAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CAC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA GAT AAC ATC GCT GAT GCT GTA ACT TGT GCA AAG AGG GTT GTC AGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AGA AAT CAC TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT CAA GGT TGT GGA GTG
Ssc_squirrelM AAG GTC TTC GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGG CTT GGA ATG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GAC TAT AAC ACA CGT GCT ACA AAC TAC AAT CCT GGA GAC CAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CAC TAT TGG TGT AAT AAT GGC AGA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA GAT GAC ATC ACT CAA GCT GTG GCC TGT GCA AAG AGG GTT GTC CGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AAA GCT CAT TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT CAA GGT TGT GGA GTA
Cja_marmoset AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGG TTT GGA CTG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GAT TAT AAC ACA CGT GCT ACA AAC TAC AAT CCT GGA GAC CAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CAC TAT TGG TGT AAC AAT GGC AGA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA GAT GAC ATC ACT GAA GCT GTG GCC TGT GCA AAG AGG GTT GTC CGC GAT CCA CAA GGC ATT AGG GCA TGG GTG GCA TGG AAA GCT CAT TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT CAA GGT TGT GGA GTA
node #8 AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA CTG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GAT TAT AAC ACA CGA GCT ACA AAC TAC AAT CCT GGA GAC CAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CAC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA GAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC CGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AGA AAT CAT TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT CAA GGT TGT GGA GTG
node #9 AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA ATG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GGT TAT AAC ACA CGA GCT ACA AAC TAC AAT CCT GGA GAC AGA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CGC TAC TGG TGT AAT GAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT TTA TCC TGC AAT GCT TTG CTG CAA GAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC CGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AGA AAT CGT TGT CAA AAC AGA GAT GTC CGT CAG TAT GTT CAA GGT TGT GGA GTG
node #10 AAG ATC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA CTG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG GTG TGT TTG GCC AAA TGG GAG AGT GAT TAT AAC ACA CAA GCT ACA AAC TAC AAT CCT GGA GAC CAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CAC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA GAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC AGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AGA AAT CAC TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT CAA GGT TGT GGA GTG
node #11 AAG ATC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AAA TTG GGA CTG GAT GGC TAC AAG GGA GTC AGC CTA GCA AAC TGG GTG TGT TTG GCC AAA TGG GAG AGT GGT TAT AAC ACA GAA GCT ACA AAC TAC AAT CCT GGA GAC GAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CGC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA AAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC AGT GAT CCA CAA GGC ATT CGA GCA TGG GTG GCA TGG AGA AAT CAC TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT GAA GGT TGT GGA GTG
node #12 AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGG TTT GGA CTG GAT GGC TAC AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GAT TAT AAC ACA CGT GCT ACA AAC TAC AAT CCT GGA GAC CAA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT AGC CAC TAT TGG TGT AAT AAT GGC AGA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC TGC AAT GCT TTG CTG CAA GAT GAC ATC ACT GAA GCT GTG GCC TGT GCA AAG AGG GTT GTC CGT GAT CCA CAA GGC ATT AGA GCA TGG GTG GCA TGG AAA GCT CAT TGT CAA AAC AGA GAT GTC AGT CAG TAT GTT CAA GGT TGT GGA GTA