BLASTP 2.0MP-WashU [12-Feb-2001] [linux-i686 01:36:08 31-Jan-2001]
Copyright (C) 1996-2000 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2000) http://blast.wustl.edu
Query= gi|1786183|gb|AAC73113.1| (AE000111) aspartokinase I, homoserine
dehydrogenase I [Escherichia coli]
(820 letters)
Database: ecoli.aa
4289 sequences; 1,358,990 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
gb|AAC76922.1| (AE000468) aspartokinase II (contig by hand) 999 0.0e-00 1
>gb|AAC76922.1| (AE000468) aspartokinase II (contig by hand)
Length = 810
Score = 999 (999.9 bits), Expect = 0.0e-00, P = 0.0e-00
Identities = 250/810 (31%), Positives = 413/810 (51%)
Query: 5 KFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDALPNI 64
KFGG+S+A+ + +LRVA I+ ++ + V+SA TN L+ ++ + + + + +
Sbjct: 16 KFGGSSLADVKCYLRVAGIMAEYSQPDDMM-VVSAAGSTTNQLINWLKLSQTDRLSAHQV 74
Query: 65 SDAERIF-AELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLH-GISLLGQCPDSINAAL 122
R + +L++GL A+ L + FV + ++ +L GI+ D++ A +
Sbjct: 75 QQTLRRYQCDLISGLLPAEEADSL--ISAFVS-DLERLAALLDSGIN------DAVYAEV 125
Query: 123 ICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRI--P 180
+ GE S +M+ VL +G +D E L A + VD S + + P
Sbjct: 126 VGHGEVWSARLMSAVLNQQGLPAAWLDAREFLRAE-RAAQPQVDEGLSYPLLQQLLVQHP 184
Query: 181 ADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQV 240
+V+ GF + N GE V+LGRNGSDYSA + A IW+DV GVY+ DPR+V
Sbjct: 185 GKRLVV-TGFISRNNAGETVLLGRNGSDYSATQIGALAGVSRVTIWSDVAGVYSADPRKV 243
Query: 241 PDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRD 300
DA LL + EA EL+ A VLH RT+ P++ +I ++ + P T I
Sbjct: 244 KDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSEIDLQLRCSYTPDQGSTRIERVLA 303
Query: 301 EDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISF 360
+ +++ +++ + P + + + RA++ + + + + F
Sbjct: 304 SGT-GARIVTSHDDVCLIEFQVPASQDFKLAHKEIDQILKRAQVRPLAVGVHNDRQLLQF 362
Query: 361 CVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGIS 413
C A + + E GL L + + LA++++VG G+ T +
Sbjct: 363 CYTSEVADSALKILDEA-------GLPGELRLRQGLALVAMVGAGV-TRNPLH 407
Query: 414 A-KFFAALARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQVIEVFVIG 472
+F+ L + Q S+ V+ + ++ HQ +F ++ I + + G
Sbjct: 408 CHRFWQQLKGQPVEFTW--QSDDGISLVAVLRTGPTESLIQGLHQSVFRAEKRIGLVLFG 465
Query: 473 VGGVGGALLEQLKRQQSWLKNKH-IDLRVCGVANSKALLTNVHGLN----LENWQEELAQ 527
G +G LE R+QS L + + + GV +S+ L + GL+ L + +E +
Sbjct: 466 KGNIGSRWLELFAREQSTLSARTGFEFVLAGVVDSRRSLLSYDGLDASRALAFFNDEAVE 525
Query: 528 AKEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMD 587
E L ++ + + V++D T+SQ +ADQY DF GFHV++ NK A S +
Sbjct: 526 QDEE----SLFLWMRAHPYDDLVVLDVTASQQLADQYLDFASHGFHVISANKLAGASDSN 581
Query: 588 YYHQLRYAAEKSRRKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKL 647
Y Q+ A EK+ R +LY+ VGAGLP+ +++L+++GD ++ SGI SG+LS++F +
Sbjct: 582 KYRQIHDAFEKTGRHWLYNATVGAGLPINHTVRDLIDSGDTILSISGIFSGTLSWLFLQF 641
Query: 648 DEGMSFSEATTLAREMGYTEPDPRDDLSGMDVARKLLILARETGRELELADIEIEPVLPA 707
D + F+E A + G TEPDPRDDLSG DV RKL+ILARE G +E + +E ++PA
Sbjct: 642 DGSVPFTELVDQAWQQGLTEPDPRDDLSGKDVMRKLVILAREAGYNIEPDQVRVESLVPA 701
Query: 708 EFNAEGDVAAFMANLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGVCRVKIAEVDGNDP 767
G + F N +L++ R+ AR+ G VLRYV D +G RV + V + P
Sbjct: 702 HCEG-GSIDHFFENGDELNEQMVQRLEAAREMGLVLRYVARFDANGKARVGVEAVREDHP 760
Query: 768 LFKVKNGENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFADLLR 812
L + +N A S +Y+ PLV+RG GAG DVTA + +D+ R
Sbjct: 761 LASLLPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAGAIQSDINR 805
Parameters:
E=0.01
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 820 820 0.010 93 3 11 22 0.19 34
37 0.22 37
Statistics:
Database: /home/jes12/db/ecoli.aa
Title: ecoli.aa
Posted: 2:52:35 PM EST Nov 18, 2001
Created: 9:46:47 AM EST Nov 18, 2001
Format: XDF-1
# of letters in database: 1,358,990
# of sequences in database: 4289
# of database sequences satisfying E: 4
No. of states in DFA: 573 (61 KB)
Total size of DFA: 281 KB (1149 KB)
Time to generate neighborhood: 0.00u 0.02s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 1
Search cpu time: 1.58u 0.00s 1.58t Elapsed: 00:00:01
Total cpu time: 1.59u 0.02s 1.61t Elapsed: 00:00:01
Start: Thu Dec 6 11:09:14 2001 End: Thu Dec 6 11:09:15 2001