FGENESH 2.3 Prediction of potential genes in C_elegans genomic DNA
Time : Wed Feb 27 13:43:15 2008
Seq name: gi|1914348|emb|Z81551.1| Caenorhabditis elegans Cosmid F56A12, complete sequence
Length of sequence: 26028
Number of predicted genes 4 in +chain 1 in -chain 3
Number of predicted exons 19 in +chain 4 in -chain 15
Positions of predicted genes and exons:
G Str Feature Start End Score ORF Len
1 - PolA 29 -0.94
1 - 1 CDSl 828 - 903 2.72 828 - 902 75
1 - 2 CDSf 996 - 1201 9.86 998 - 1201 204
1 - TSS 1869 -4.49
2 - PolA 9879 1.25
2 - 1 CDSl 10132 - 10275 7.05 10132 - 10275 144
2 - 2 CDSi 11180 - 11291 3.76 11180 - 11290 111
2 - 3 CDSi 11786 - 12035 1.01 11788 - 12033 246
2 - 4 CDSi 12238 - 12404 9.79 12239 - 12403 165
2 - 5 CDSf 12884 - 12900 0.72 12886 - 12900 15
2 - TSS 13142 -4.89
3 + TSS 14096 -7.69
3 + 1 CDSf 14778 - 15104 27.84 14778 - 15104 327
3 + 2 CDSi 15673 - 15802 20.10 15673 - 15801 129
3 + 3 CDSi 16175 - 16524 28.83 16177 - 16524 348
3 + 4 CDSl 16988 - 17212 15.92 16988 - 17212 225
3 + PolA 17223 1.25
4 - PolA 17420 1.25
4 - 1 CDSl 17552 - 17630 0.75 17552 - 17629 78
4 - 2 CDSi 17690 - 17848 22.67 17692 - 17847 156
4 - 3 CDSi 18221 - 18453 26.88 18223 - 18453 231
4 - 4 CDSi 18501 - 18637 19.50 18501 - 18635 135
4 - 5 CDSi 18850 - 19024 8.97 18851 - 19024 174
4 - 6 CDSi 19073 - 19156 8.63 19073 - 19156 84
4 - 7 CDSi 19206 - 19472 23.22 19206 - 19472 267
4 - 8 CDSf 20381 - 20479 21.19 20381 - 20479 99
4 - TSS 21231 -5.29
Predicted protein(s):
>FGENESH: 1 2 exon (s) 828 - 1201 93 aa, chain -
MSCRHRSTSTTGCKHQNILYAREKMYVWECQHGNGKKGEKLIVGMGVLELLGVSMRILYA
REKVSAWEICFGFYKFSFQKAENHETCRKIIEN
>FGENESH: 2 5 exon (s) 10132 - 12900 229 aa, chain -
MNLLQSTSIDYHVAHNVWLQMENNLYFLRIHLLSSPIWGVGAAVNTFLIETVDQITIAGV
KRGLSLLNYFLFTYGKPLPIEHIVKGPLSTKIPSMCYWQLCSKIFRKMKTPKSGKTEFLC
VSIFVAQAFFSFKDPEARDKAETLDNDHVAGVVKIVAPITYIYTSPSILLAQTSCLERRT
PVKYIDLFLCFFFLFFFPDPLVLIGTGWHAWAPLTIICSMFSDEKSTNS
>FGENESH: 3 4 exon (s) 14778 - 17212 343 aa, chain +
MSSIPPYFMTDHPPIDTSSYFDCYQQHQLPLQYTFTSSSNSNTSNSSTSPSHISDQFSSS
GGPPYELSSHILTPSSVIPTPSPSVASASISSPTIPAFGCTMSEYSMEQMEAISTSLFQA
RDGDRLVAFFKQLESLYGPNAVDHLRSEAIIVAYTYALYHSNEFETLFHLLSNRHFQQRH
YNDLQDIWHHARYKESQLKRGKELNPVEKYRLRRKFPAPKTIWDGEEIVYSFKDSSRKFL
KQFFRNVSEYPTQEQKREISRATGLKIVQISNWFKNRRQRDKSNNSAKCSPPSSSSSTNG
GSDFLPIITPQSFNLAAAPFNMNMIYGTLRDSQSDNDQFTFNP
>FGENESH: 4 8 exon (s) 17552 - 20479 410 aa, chain -
MNETDDNWTVFTKLYSCQYRASDDSPQFTLWLDGPVTISAAIFSAIGTVYAIGFLRNGHL
NRRMSAALYTLCLMDFMLTMTTVLFLSIEPLSILLFRTNIFYQHQDMILILYGIRNSFAM
SSPMLVCYITYIRYRVVNNPLKFASHYGRSRKSISASKMSTAAQPSSTESAKFTISFPAE
MFYEFHTRSNAGKRGANFRRFFRPFLVPILLVILCFVIHSTSYFEFNLITCFDEVHQTES
KMLQMTQLRGDSYWYFQFKVALTMTTETLGPMLFISTLSLFTEYKMHQNVKERRRLFESQ
KRSRNTLVTEELKDKASKALAVFIVVKFLILRSLPTLIDLYEVLIENSINFGPFMTKVTR
ISDFLVILNSATNTLAYFGKVRFEKWLERRIRCRIVKKEAKEILSTSLTG