t/data/testdbaccnums.out

BLASTP 2.2.4 [Aug-26-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
RID: 1036160600-011802-21377
Query= test_result
         (8 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           1,220,597 sequences; 388,937,031 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|NP_065733.1|CYT19 (NM_020682) Cyt19 protein; likely ortholog of r...    31   0.18 
emb|XP_053690.4|Cyt19 (XM_053690) similar to Cyt19 protein; likely or...    31   0.18 
dbj|NP_056277.2|DKFZP586L0724 (NM_015462) DKFZP586L0724 protein [Homo sapiens...    21   113  
pir||T14789 hypothetical protein DKFZp586L0724.1 - human >gi|581...    21   113  
prf||XP_064862.2 (XM_064862) similar to pheromone receptor [Homo...    21   152  
pdb|BAB13968.1|1 (AK022138) unnamed protein product [Homo sapiens]      21   204  
sp|Q16478|GLK5_HUMAN Glutamate receptor, ionotropic kainate 5 pr...    21   204  
pat|US|NP_002079.2 (NM_002088) glutamate receptor, ionotropic, kai...    21   204  
bbs|NP_079463.2| (NM_025187) hypothetical protein FLJ12076 [Homo...    21   204  
gnl|db1|NP_002444.1 (NM_002453) mitochondrial translational initiat...    21   204  
ref|XP_051877.1| (XM_051877) similar to NS1-binding protein-like...    20   274  
lcl|AAH16829.1| (BC016829) Unknown (protein for IMAGE:413...    20   274  
gi|1|gb|NP_065733.1|CYT19 (NM_020682) Cyt19 protein; likely ortholog of r...    31   0.18 
gi|2|emb|XP_053690.4|Cyt19 (XM_053690) similar to Cyt19 protein; likely or...    31   0.18 
gi|3|dbj|NP_056277.2|DKFZP586L0724 (NM_015462) DKFZP586L0724 protein [Homo sapiens...    21   113  
gi|4|pir||T14789 hypothetical protein DKFZp586L0724.1 - human >gi|581...    21   113  
gi|5|prf||XP_064862.2 (XM_064862) similar to pheromone receptor [Homo...    21   152  
gi|6|pdb|BAB13968.1|1 (AK022138) unnamed protein product [Homo sapiens]      21   204  
gi|7|sp|Q16478|GLK5_HUMAN Glutamate receptor, ionotropic kainate 5 pr...    21   204  
gi|8|pat|US|NP_002079.2 (NM_002088) glutamate receptor, ionotropic, kai...    21   204  
gi|9|bbs|NP_079463.2| (NM_025187) hypothetical protein FLJ12076 [Homo...    21   204  
gi|10|gnl|db1|NP_002444.1 (NM_002453) mitochondrial translational initiat...    21   204  
gi|11|ref|XP_051877.1| (XM_051877) similar to NS1-binding protein-like...    20   274  
gi|12|lcl|AAH16829.1| (BC016829) Unknown (protein for IMAGE:413...    20   274  
MY_test_ID (BC016829) Unknown (protein for IMAGE:413...    20   274  

ALIGNMENTS
>pir||T14789 hypothetical protein DKFZp586L0724.1 - human
 emb|CAB53709.1| (AL110271) hypothetical protein [Homo sapiens]
 gb|AAH01726.1|AAH01726 (BC001726) Similar to DKFZP586L0724 protein [Homo sapiens]
          Length = 314

 Score = 21.4 bits (43), Expect =   113
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   LMFDANFT 8
           L+ DANFT
Sbjct: 247 LLLDANFT 254


>gb|NP_065733.1|CYT19 (NM_020682) Cyt19 protein; likely ortholog of rat methyltransferase
           Cyt19; S-adenosylmethionine:arsenic (III)
           methyltransferase [Homo sapiens]
 gb|AAG09731.1|AF226730_1 (AF226730) Cyt19 [Homo sapiens]
          Length = 338

 Score = 30.8 bits (65), Expect = 0.18
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1   LMFDANFT 8
           LMFDANFT
Sbjct: 286 LMFDANFT 293


>emb|XP_053690.4|Cyt19 (XM_053690) similar to Cyt19 protein; likely ortholog of rat
           methyltransferase Cyt19; S-adenosylmethionine:arsenic
           (III) methyltransferase [Homo sapiens]
          Length = 375

 Score = 30.8 bits (65), Expect = 0.18
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1   LMFDANFT 8
           LMFDANFT
Sbjct: 286 LMFDANFT 293


>dbj|NP_056277.2|DKFZP586L0724 (NM_015462) DKFZP586L0724 protein [Homo sapiens]
 dbj|BAB14647.1| (AK023702) unnamed protein product [Homo sapiens]
          Length = 719

 Score = 21.4 bits (43), Expect =   113
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   LMFDANFT 8
           L+ DANFT
Sbjct: 652 LLLDANFT 659


>prf||XP_064862.2 (XM_064862) similar to pheromone receptor [Homo sapiens]
          Length = 370

 Score = 21.0 bits (42), Expect =   152
 Identities = 5/5 (100%), Positives = 5/5 (100%)

Query: 2   MFDAN 6
           MFDAN
Sbjct: 348 MFDAN 352


>pdb|BAB13968.1|1 (AK022138) unnamed protein product [Homo sapiens]
          Length = 258

 Score = 20.6 bits (41), Expect =   204
 Identities = 5/5 (100%), Positives = 5/5 (100%)

Query: 1  LMFDA 5
          LMFDA
Sbjct: 45 LMFDA 49


>sp|Q16478|GLK5_HUMAN Glutamate receptor, ionotropic kainate 5 precursor (Glutamate
           receptor KA-2) (KA2) (Excitatory amino acid receptor 2)
           (EAA2)
 pir||I57936 glutamate receptor subunit - human
 gb|AAB22591.1| (S40369) glutamate receptor subunit; EAA2; excitatory amino acid
           receptor 2 [Homo sapiens]
          Length = 980

 Score = 20.6 bits (41), Expect =   204
 Identities = 5/5 (100%), Positives = 5/5 (100%)

Query: 1   LMFDA 5
           LMFDA
Sbjct: 306 LMFDA 310


>pat|US|NP_002079.2 (NM_002088) glutamate receptor, ionotropic, kainate 5 [Homo
           sapiens]
 emb|CAC80547.1| (AJ249209) kainate receptor subunit KA2a [Homo sapiens]
          Length = 981

 Score = 20.6 bits (41), Expect =   204
 Identities = 5/5 (100%), Positives = 5/5 (100%)

Query: 1   LMFDA 5
           LMFDA
Sbjct: 306 LMFDA 310


>bbs|NP_079463.2| (NM_025187) hypothetical protein FLJ12076 [Homo sapiens]
 sp|Q9BSU1|U183_HUMAN UPF0183 protein
 gb|AAH04556.1|AAH04556 (BC004556) Similar to CG7083 gene product [Homo sapiens]
 gb|AAK96888.1| (AF176088) lin-10-like protein [Homo sapiens]
          Length = 422

 Score = 20.6 bits (41), Expect =   204
 Identities = 5/5 (100%), Positives = 5/5 (100%)

Query: 1  LMFDA 5
          LMFDA
Sbjct: 67 LMFDA 71



 Score = 16.8 bits (32), Expect =  2880
 Identities = 4/5 (80%), Positives = 5/5 (100%)

Query: 2   MFDAN 6
           +FDAN
Sbjct: 296 LFDAN 300


>gnl|db1|NP_002444.1 (NM_002453) mitochondrial translational initiation factor 2
           precursor; IF-2mt [Homo sapiens]
 sp|P46199|IF2M_HUMAN Translation initiation factor IF-2, mitochondrial precursor
           (IF-2Mt) (IF-2(Mt))
 pir||A55628 translation initiation factor IF-2 precursor, mitochondrial - human
 gb|AAA67038.1| (L34600) initiation factor 2 [Homo sapiens]
 gb|AAM14617.1|AF494407_1 (AF494407) mitochondrial translation-initiation factor 2 [Homo
           sapiens]
 gb|AAM70196.1| (AF495546) translation initiation factor 2 [Homo sapiens]
          Length = 727

 Score = 20.6 bits (41), Expect =   204
 Identities = 5/6 (83%), Positives = 5/6 (83%)

Query: 1   LMFDAN 6
           LMFD N
Sbjct: 398 LMFDEN 403


>ref|XP_051877.1| (XM_051877) similar to NS1-binding protein-like protein [Homo
          sapiens]
 dbj|BAA74873.1| (AB020657) KIAA0850 protein [Homo sapiens]
 emb|CAB72329.1| (AL078644) bG279B7.1.1 (NS1-binding protein (KIAA0850, BTB/POZ
          domain and Kelch motifs containing protein)) [Homo
          sapiens]
 gb|AAG43485.1| (AF205218) NS1-binding protein-like protein [Homo sapiens]
          Length = 642

 Score = 20.2 bits (40), Expect =   274
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 1/8 (12%)

Query: 1  LMF-DANF 7
          LMF D NF
Sbjct: 7  LMFEDENF 14


>lcl|AAH16829.1| (BC016829) Unknown (protein for IMAGE:4132295) [Homo sapiens]
          Length = 391

 Score = 20.2 bits (40), Expect =   274
 Identities = 5/6 (83%), Positives = 5/6 (83%)

Query: 3  FDANFT 8
          FD NFT
Sbjct: 32 FDTNFT 37

>gi|1|gb|NP_065733.1|CYT19 (NM_020682) Cyt19 protein; likely ortholog of rat methyltransferase
           Cyt19; S-adenosylmethionine:arsenic (III)
           methyltransferase [Homo sapiens]
 gb|AAG09731.1|AF226730_1 (AF226730) Cyt19 [Homo sapiens]
          Length = 338

 Score = 30.8 bits (65), Expect = 0.18
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1   LMFDANFT 8
           LMFDANFT
Sbjct: 286 LMFDANFT 293


>gi|2|emb|XP_053690.4|Cyt19 (XM_053690) similar to Cyt19 protein; likely ortholog of rat
           methyltransferase Cyt19; S-adenosylmethionine:arsenic
           (III) methyltransferase [Homo sapiens]
          Length = 375

 Score = 30.8 bits (65), Expect = 0.18
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1   LMFDANFT 8
           LMFDANFT
Sbjct: 286 LMFDANFT 293


>gi|3|dbj|NP_056277.2|DKFZP586L0724 (NM_015462) DKFZP586L0724 protein [Homo sapiens]
 dbj|BAB14647.1| (AK023702) unnamed protein product [Homo sapiens]
          Length = 719

 Score = 21.4 bits (43), Expect =   113
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   LMFDANFT 8
           L+ DANFT
Sbjct: 652 LLLDANFT 659


>gi|4|pir||T14789 hypothetical protein DKFZp586L0724.1 - human
 emb|CAB53709.1| (AL110271) hypothetical protein [Homo sapiens]
 gb|AAH01726.1|AAH01726 (BC001726) Similar to DKFZP586L0724 protein [Homo sapiens]
          Length = 314

 Score = 21.4 bits (43), Expect =   113
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   LMFDANFT 8
           L+ DANFT
Sbjct: 247 LLLDANFT 254


>gi|5|prf||XP_064862.2 (XM_064862) similar to pheromone receptor [Homo sapiens]
          Length = 370

 Score = 21.0 bits (42), Expect =   152
 Identities = 5/5 (100%), Positives = 5/5 (100%)

Query: 2   MFDAN 6
           MFDAN
Sbjct: 348 MFDAN 352


>gi|6|pdb|BAB13968.1|1 (AK022138) unnamed protein product [Homo sapiens]
          Length = 258

 Score = 20.6 bits (41), Expect =   204
 Identities = 5/5 (100%), Positives = 5/5 (100%)

Query: 1  LMFDA 5
          LMFDA
Sbjct: 45 LMFDA 49


>gi|7|sp|Q16478|GLK5_HUMAN Glutamate receptor, ionotropic kainate 5 precursor (Glutamate
           receptor KA-2) (KA2) (Excitatory amino acid receptor 2)
           (EAA2)
 pir||I57936 glutamate receptor subunit - human
 gb|AAB22591.1| (S40369) glutamate receptor subunit; EAA2; excitatory amino acid
           receptor 2 [Homo sapiens]
          Length = 980

 Score = 20.6 bits (41), Expect =   204
 Identities = 5/5 (100%), Positives = 5/5 (100%)

Query: 1   LMFDA 5
           LMFDA
Sbjct: 306 LMFDA 310


>gi|8|pat|US|NP_002079.2 (NM_002088) glutamate receptor, ionotropic, kainate 5 [Homo
           sapiens]
 emb|CAC80547.1| (AJ249209) kainate receptor subunit KA2a [Homo sapiens]
          Length = 981

 Score = 20.6 bits (41), Expect =   204
 Identities = 5/5 (100%), Positives = 5/5 (100%)

Query: 1   LMFDA 5
           LMFDA
Sbjct: 306 LMFDA 310


>gi|9|bbs|NP_079463.2| (NM_025187) hypothetical protein FLJ12076 [Homo sapiens]
 sp|Q9BSU1|U183_HUMAN UPF0183 protein
 gb|AAH04556.1|AAH04556 (BC004556) Similar to CG7083 gene product [Homo sapiens]
 gb|AAK96888.1| (AF176088) lin-10-like protein [Homo sapiens]
          Length = 422

 Score = 20.6 bits (41), Expect =   204
 Identities = 5/5 (100%), Positives = 5/5 (100%)

Query: 1  LMFDA 5
          LMFDA
Sbjct: 67 LMFDA 71



 Score = 16.8 bits (32), Expect =  2880
 Identities = 4/5 (80%), Positives = 5/5 (100%)

Query: 2   MFDAN 6
           +FDAN
Sbjct: 296 LFDAN 300


>gi|10|gnl|db1|NP_002444.1 (NM_002453) mitochondrial translational initiation factor 2
           precursor; IF-2mt [Homo sapiens]
 sp|P46199|IF2M_HUMAN Translation initiation factor IF-2, mitochondrial precursor
           (IF-2Mt) (IF-2(Mt))
 pir||A55628 translation initiation factor IF-2 precursor, mitochondrial - human
 gb|AAA67038.1| (L34600) initiation factor 2 [Homo sapiens]
 gb|AAM14617.1|AF494407_1 (AF494407) mitochondrial translation-initiation factor 2 [Homo
           sapiens]
 gb|AAM70196.1| (AF495546) translation initiation factor 2 [Homo sapiens]
          Length = 727

 Score = 20.6 bits (41), Expect =   204
 Identities = 5/6 (83%), Positives = 5/6 (83%)

Query: 1   LMFDAN 6
           LMFD N
Sbjct: 398 LMFDEN 403


>gi|11|ref|XP_051877.1| (XM_051877) similar to NS1-binding protein-like protein [Homo
          sapiens]
 dbj|BAA74873.1| (AB020657) KIAA0850 protein [Homo sapiens]
 emb|CAB72329.1| (AL078644) bG279B7.1.1 (NS1-binding protein (KIAA0850, BTB/POZ
          domain and Kelch motifs containing protein)) [Homo
          sapiens]
 gb|AAG43485.1| (AF205218) NS1-binding protein-like protein [Homo sapiens]
          Length = 642

 Score = 20.2 bits (40), Expect =   274
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 1/8 (12%)

Query: 1  LMF-DANF 7
          LMF D NF
Sbjct: 7  LMFEDENF 14


>gi|12|lcl|AAH16829.1| (BC016829) Unknown (protein for IMAGE:4132295) [Homo sapiens]
          Length = 391

 Score = 20.2 bits (40), Expect =   274
 Identities = 5/6 (83%), Positives = 5/6 (83%)

Query: 3  FDANFT 8
          FD NFT
Sbjct: 32 FDTNFT 37

>MY_test_ID (BC016829) Unknown (protein for IMAGE:4132295) [Homo sapiens]
          Length = 391

 Score = 20.2 bits (40), Expect =   274
 Identities = 5/6 (83%), Positives = 5/6 (83%)

Query: 3  FDANFT 8
          FD NFT
Sbjct: 32 FDTNFT 37


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Oct 31, 2002  3:52 AM
  Number of letters in database: 388,937,031
  Number of sequences in database:  1,220,597
  
Lambda     K      H
   0.328    0.274     1.77 

Gapped
Lambda     K      H
   0.294    0.110    0.610 


Matrix: PAM30
Gap Penalties: Existence: 9, Extension: 1
Number of Hits to DB: 660,045
Number of Sequences: 1220597
Number of extensions: 3731
Number of successful extensions: 3028
Number of sequences better than 200000.0: 2850
Number of HSP's better than 200000.0 without gapping: 2850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3028
length of query: 8
length of database: 35,444,647
effective HSP length: 0
effective length of query: 9
effective length of database: 35,444,647
effective search space: 319001823
effective search space used: 319001823
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 35 (14.8 bits)
X3: 58 (24.6 bits)
S1: 18 (10.4 bits)
S2: 18 (10.8 bits)
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