Reference: Gish, W. (1996-2004) http://blast.wustl.edu
Query= AT1G70100.2 | Symbol: None | expressed protein | chr1:26406799-26409760
FORWARD | Aliases: None
(483 letters; record 9)
Database: AraRicMaiMedVir
151,652 sequences; 63,865,049 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
AT5G55660.1 | Symbol: None | expressed protein, similar t... 104 0.019 1
>AT5G55660.1 | Symbol: None | expressed protein, similar to unknown protein
(pir::T08929) | chr5:22556601-22560700 FORWARD | Aliases: MDF20.10,
MDF20_10
Length = 779
Score = 104 (41.7 bits), Expect = 0.019, P = 0.019
Identities = 58/240 (24%), Positives = 106/240 (44%)
Query: 115 - 350
Sbjct: 159 - 380
Score = 93 (37.8 bits), Expect = 0.29, P = 0.26
Identities = 45/211 (21%), Positives = 82/211 (38%)
Query: 182 - 389
Sbjct: 527 - 730
Score = 88 (36.0 bits), Expect = 1.0, P = 0.64
Identities = 54/229 (23%), Positives = 91/229 (39%)
Query: 175 - 398
Sbjct: 444 - 642
Score = 83 (34.3 bits), Expect = 3.6, P = 0.97
Identities = 85/386 (22%), Positives = 150/386 (38%)
Query: 115 - 473
Sbjct: 159 - 534
Score = 78 (32.5 bits), Expect = 0.43, Sum P(2) = 0.35
Identities = 50/253 (19%), Positives = 112/253 (44%)
Query: 36 - 280
Sbjct: 24 - 261
Score = 59 (25.8 bits), Expect = 0.43, Sum P(2) = 0.35
Identities = 45/225 (20%), Positives = 83/225 (36%)
Query: 267 - 478
Sbjct: 445 - 662
Score = 57 (25.1 bits), Expect = 0.68, Sum P(2) = 0.50
Identities = 43/212 (20%), Positives = 89/212 (41%)
Query: 276 - 481
Sbjct: 479 - 678
Parameters:
gi
noseqs
stats
wordmask=seg+xnu
qrecmin=1
qrecmax=10110
E=10
V=10000
B=10000
postsw
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.306 0.122 0.320 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 483 483 10. 78 3 10 23 0.19 35
35 0.22 37
Statistics:
Query Expected Observed HSPs
Frame MatID High Score High Score Reportable
+0 0 71 (31.4 bits) 2415 (1066.8 bits) 1089
Query Neighborhd Word Excluded Failed Successful Overlaps
Frame MatID Words Hits Hits Extensions Extensions Excluded
+0 0 14620 91959369 23132921 68703395 123053 3666