,"AUTHORS"
"Bio-Analysis","Bio/AnalysisI.pm"
,"Bio/Draw/Pictogram.pm"
"Bio-Taxonomy","Bio/Taxonomy/Tree.pm"
"Bio-Taxonomy","Bio/Taxonomy/FactoryI.pm"
"Bio-Taxonomy","Bio/Taxonomy/Node.pm"
"Bio-Taxonomy","Bio/Taxonomy/Taxon.pm"
,"Bio/HandlerBaseI.pm"
,"Bio/DescribableI.pm"
,"Bio/Nexml/Factory.pm"
,"Bio/MapIO/mapmaker.pm"
,"Bio/MapIO/fpc.pm"
"Bio-SeqEvolution","Bio/SeqEvolution/DNAPoint.pm"
"Bio-SeqEvolution","Bio/SeqEvolution/EvolutionI.pm"
"Bio-SeqEvolution","Bio/SeqEvolution/Factory.pm"
"Bio-SeqIO","Bio/SeqIO.pm"
,"Bio/OntologyIO.pm"
,"Bio/PhyloNetwork.pm"
,"Bio/DBLinkContainerI.pm"
"Bio-Map","Bio/Map/Contig.pm"
"Bio-Map","Bio/Map/CytoMap.pm"
"Bio-Map","Bio/Map/MapI.pm"
"Bio-Map","Bio/Map/Gene.pm"
"Bio-Map","Bio/Map/SimpleMap.pm"
"Bio-Map","Bio/Map/LinkagePosition.pm"
"Bio-Map","Bio/Map/CytoMarker.pm"
"Bio-Map","Bio/Map/PositionI.pm"
"Bio-Map","Bio/Map/Microsatellite.pm"
"Bio-Map","Bio/Map/OrderedPositionWithDistance.pm"
"Bio-Map","Bio/Map/Prediction.pm"
"Bio-Map","Bio/Map/Physical.pm"
"Bio-Map","Bio/Map/PositionHandler.pm"
"Bio-Map","Bio/Map/Position.pm"
"Bio-Map","Bio/Map/PositionWithSequence.pm"
"Bio-Map","Bio/Map/GenePosition.pm"
"Bio-Map","Bio/Map/MarkerI.pm"
"Bio-Map","Bio/Map/RelativeI.pm"
"Bio-Map","Bio/Map/MappableI.pm"
"Bio-Map","Bio/Map/GeneMap.pm"
"Bio-Map","Bio/Map/TranscriptionFactor.pm"
"Bio-Map","Bio/Map/Clone.pm"
"Bio-Map","Bio/Map/Mappable.pm"
"Bio-Map","Bio/Map/OrderedPosition.pm"
"Bio-Map","Bio/Map/Marker.pm"
"Bio-Map","Bio/Map/LinkageMap.pm"
"Bio-Map","Bio/Map/GeneRelative.pm"
"Bio-Map","Bio/Map/Relative.pm"
"Bio-Map","Bio/Map/CytoPosition.pm"
"Bio-Map","Bio/Map/FPCMarker.pm"
"Bio-Map","Bio/Map/PositionHandlerI.pm"
"Bio-Map","Bio/Map/EntityI.pm"
"Bio-Restriction","Bio/Restriction/EnzymeCollection.pm"
"Bio-Restriction","Bio/Restriction/IO/withrefm.pm"
"Bio-Restriction","Bio/Restriction/IO/itype2.pm"
"Bio-Restriction","Bio/Restriction/IO/prototype.pm"
"Bio-Restriction","Bio/Restriction/IO/bairoch.pm"
"Bio-Restriction","Bio/Restriction/IO/base.pm"
"Bio-Restriction","Bio/Restriction/Enzyme/MultiSite.pm"
"Bio-Restriction","Bio/Restriction/Enzyme/MultiCut.pm"
"Bio-Restriction","Bio/Restriction/IO.pm"
"Bio-Restriction","Bio/Restriction/Analysis.pm"
"Bio-Restriction","Bio/Restriction/Enzyme.pm"
"Bio-Restriction","Bio/Restriction/EnzymeI.pm"
,"Bio/LocationI.pm"
"Bio-Tree","Bio/TreeIO/phyloxml.pm"
"Bio-Tree","Bio/TreeIO/pag.pm"
"Bio-Tree","Bio/TreeIO/lintree.pm"
"Bio-Tree","Bio/TreeIO/svggraph.pm"
"Bio-Tree","Bio/TreeIO/nexml.pm"
"Bio-Tree","Bio/TreeIO/nhx.pm"
"Bio-Tree","Bio/TreeIO/nexus.pm"
"Bio-Tree","Bio/TreeIO/tabtree.pm"
"Bio-Tree","Bio/TreeIO/newick.pm"
"Bio-Tree","Bio/TreeIO/cluster.pm"
"Bio-Tree","Bio/TreeIO/TreeEventBuilder.pm"
"Bio-Analysis","Bio/AnalysisResultI.pm"
,"Bio/Range.pm"
"Bio-Tree","Bio/TreeIO.pm"
,"Bio/IdentifiableI.pm"
"Bio-Das","Bio/Das/SegmentI.pm"
"Bio-Das","Bio/Das/FeatureTypeI.pm"
,"Bio/PullParserI.pm"
"Bio-Analysis","Bio/Factory/AnalysisI.pm"
,"Bio/Factory/SequenceProcessorI.pm"
,"Bio/Factory/SequenceStreamI.pm"
,"Bio/Factory/ObjectFactoryI.pm"
,"Bio/Factory/TreeFactoryI.pm"
,"Bio/Factory/SeqAnalysisParserFactoryI.pm"
,"Bio/Factory/MapFactoryI.pm"
,"Bio/Factory/SequenceFactoryI.pm"
,"Bio/Factory/SeqAnalysisParserFactory.pm"
,"Bio/Factory/ObjectBuilderI.pm"
,"Bio/Factory/ApplicationFactoryI.pm"
,"Bio/Factory/FTLocationFactory.pm"
,"Bio/Factory/ObjectFactory.pm"
,"Bio/Factory/DriverFactory.pm"
,"Bio/Factory/LocationFactoryI.pm"
,"Bio/Species.pm"
,"Bio/NexmlIO.pm"
"Bio-Cluster","Bio/Cluster/UniGene.pm"
"Bio-Cluster","Bio/Cluster/UniGeneI.pm"
"Bio-Cluster","Bio/Cluster/FamilyI.pm"
"Bio-Cluster","Bio/Cluster/SequenceFamily.pm"
"Bio-Cluster","Bio/Cluster/ClusterFactory.pm"
,"Bio/SimpleAlign.pm"
"Bio-Cluster","Bio/ClusterI.pm"
"Bio-Coordinate","Bio/Coordinate/Graph.pm"
"Bio-Coordinate","Bio/Coordinate/GeneMapper.pm"
"Bio-Coordinate","Bio/Coordinate/Chain.pm"
"Bio-Coordinate","Bio/Coordinate/Collection.pm"
"Bio-Coordinate","Bio/Coordinate/Result.pm"
"Bio-Coordinate","Bio/Coordinate/ResultI.pm"
"Bio-Coordinate","Bio/Coordinate/Pair.pm"
"Bio-Coordinate","Bio/Coordinate/MapperI.pm"
"Bio-Coordinate","Bio/Coordinate/ExtrapolatingPair.pm"
"Bio-Coordinate","Bio/Coordinate/Utils.pm"
"Bio-Coordinate","Bio/Coordinate/Result/Gap.pm"
"Bio-Coordinate","Bio/Coordinate/Result/Match.pm"
,"Bio/Seq.pm"
"Bio-Tree","Bio/Tree/Draw/Cladogram.pm"
"Bio-Tree","Bio/Tree/DistanceFactory.pm"
"Bio-Tree","Bio/Tree/Compatible.pm"
"Bio-Tree","Bio/Tree/TreeI.pm"
"Bio-Tree","Bio/Tree/Tree.pm"
"Bio-Tree","Bio/Tree/AnnotatableNode.pm"
"Bio-Tree","Bio/Tree/NodeI.pm"
"Bio-Tree","Bio/Tree/AlleleNode.pm"
"Bio-Tree","Bio/Tree/Statistics.pm"
"Bio-Tree","Bio/Tree/RandomFactory.pm"
"Bio-Tree","Bio/Tree/Node.pm"
"Bio-Tree","Bio/Tree/TreeFunctionsI.pm"
"Bio-Tree","Bio/Tree/NodeNHX.pm"
,"Bio/Structure/IO/pdb.pm"
"Bio-Structure","Bio/Structure/Atom.pm"
"Bio-Structure","Bio/Structure/Residue.pm"
"Bio-Structure","Bio/Structure/StructureI.pm"
"Bio-Structure","Bio/Structure/Chain.pm"
"Bio-Structure","Bio/Structure/IO.pm"
"Bio-Structure","Bio/Structure/Model.pm"
"Bio-Structure","Bio/Structure/Entry.pm"
"Bio-Structure","Bio/Structure/SecStr/DSSP/Res.pm"
"Bio-Structure","Bio/Structure/SecStr/STRIDE/Res.pm"
"Bio-SeqFeature-Annotated","Bio/SeqFeature/Annotated.pm"
"Bio-SeqFeature-Gene","Bio/SeqFeature/Gene/ExonI.pm"
"Bio-SeqFeature-Gene","Bio/SeqFeature/Gene/UTR.pm"
"Bio-SeqFeature-Gene","Bio/SeqFeature/Gene/Exon.pm"
"Bio-SeqFeature-Gene","Bio/SeqFeature/Gene/Transcript.pm"
"Bio-SeqFeature-Gene","Bio/SeqFeature/Gene/GeneStructure.pm"
"Bio-SeqFeature-Gene","Bio/SeqFeature/Gene/GeneStructureI.pm"
"Bio-SeqFeature-Gene","Bio/SeqFeature/Gene/Poly_A_site.pm"
"Bio-SeqFeature-Gene","Bio/SeqFeature/Gene/NC_Feature.pm"
"Bio-SeqFeature-Gene","Bio/SeqFeature/Gene/Promoter.pm"
"Bio-SeqFeature-Gene","Bio/SeqFeature/Gene/Intron.pm"
"Bio-SeqFeature-Gene","Bio/SeqFeature/Gene/TranscriptI.pm"
,"Bio/SeqFeature/Generic.pm"
,"Bio/SeqFeature/SiRNA/Pair.pm"
,"Bio/SeqFeature/SiRNA/Oligo.pm"
,"Bio/SeqFeature/FeaturePair.pm"
,"Bio/SeqFeature/Similarity.pm"
,"Bio/SeqFeature/Computation.pm"
,"Bio/SeqFeature/Collection.pm"
,"Bio/SeqFeature/Primer.pm"
,"Bio/SeqFeature/SimilarityPair.pm"
,"Bio/SeqFeature/AnnotationAdaptor.pm"
,"Bio/SeqFeature/PositionProxy.pm"
,"Bio/SeqFeature/TypedSeqFeatureI.pm"
,"Bio/SeqFeature/Lite.pm"
,"Bio/SeqFeature/CollectionI.pm"
,"Bio/SeqFeature/Tools/Unflattener.pm"
,"Bio/SeqFeature/Tools/IDHandler.pm"
,"Bio/SeqFeature/Tools/FeatureNamer.pm"
,"Bio/SeqFeature/Tools/TypeMapper.pm"
"Bio-Variation","Bio/Variation/AAReverseMutate.pm"
"Bio-Variation","Bio/Variation/IO/flat.pm"
"Bio-Variation","Bio/Variation/IO/xml.pm"
"Bio-Variation","Bio/Variation/AAChange.pm"
"Bio-Variation","Bio/Variation/SNP.pm"
"Bio-Variation","Bio/Variation/README"
"Bio-Variation","Bio/Variation/SeqDiff.pm"
"Bio-Variation","Bio/Variation/IO.pm"
"Bio-Variation","Bio/Variation/RNAChange.pm"
"Bio-Variation","Bio/Variation/DNAMutation.pm"
"Bio-Variation","Bio/Variation/Allele.pm"
"Bio-Variation","Bio/Variation/VariantI.pm"
,"Bio/AnnotationCollectionI.pm"
,"Bio/Perl.pm"
,"Bio/MolEvol/CodonModel.pm"
"Bio-Align","Bio/AlignIO/proda.pm"
"Bio-Align","Bio/AlignIO/stockholm.pm"
"Bio-Align","Bio/AlignIO/clustalw.pm"
"Bio-Align","Bio/AlignIO/xmfa.pm"
"Bio-Align","Bio/AlignIO/selex.pm"
"Bio-Align","Bio/AlignIO/fasta.pm"
"Bio-Align","Bio/AlignIO/bl2seq.pm"
"Bio-Align","Bio/AlignIO/emboss.pm"
"Bio-Align","Bio/AlignIO/arp.pm"
"Bio-Align","Bio/AlignIO/prodom.pm"
"Bio-Align","Bio/AlignIO/po.pm"
"Bio-Align","Bio/AlignIO/nexml.pm"
"Bio-Align","Bio/AlignIO/meme.pm"
"Bio-Align","Bio/AlignIO/mega.pm"
"Bio-Align","Bio/AlignIO/pfam.pm"
"Bio-Align","Bio/AlignIO/largemultifasta.pm"
"Bio-Align","Bio/AlignIO/maf.pm"
"Bio-Align","Bio/AlignIO/nexus.pm"
"Bio-Align","Bio/AlignIO/msf.pm"
"Bio-Align","Bio/AlignIO/psi.pm"
"Bio-Align","Bio/AlignIO/phylip.pm"
"Bio-Align","Bio/AlignIO/Handler/GenericAlignHandler.pm"
"Bio-Align","Bio/AlignIO/mase.pm"
"Bio-Align","Bio/AlignIO/metafasta.pm"
,"Bio/SeqFeatureI.pm"
"Bio-Align","Bio/Align/DNAStatistics.pm"
"Bio-Align","Bio/Align/ProteinStatistics.pm"
"Bio-Align","Bio/Align/AlignI.pm"
"Bio-Align","Bio/Align/PairwiseStatistics.pm"
"Bio-Align","Bio/Align/Utilities.pm"
"Bio-Align","Bio/Align/Graphics.pm"
"Bio-Align","Bio/Align/StatisticsI.pm"
,"Bio/UpdateableSeqI.pm"
,"Bio/CodonUsage/IO.pm"
,"Bio/CodonUsage/Table.pm"
,"Bio/ClusterIO/unigene.pm"
,"Bio/ClusterIO/dbsnp.pm"
,"Bio/PrimarySeq.pm"
,"Bio/SearchIO.pm"
"Bio-Seq-Meta","Bio/Seq/MetaI.pm"
"Bio-Seq","Bio/Seq/LargeSeqI.pm"
"Bio-Seq","Bio/Seq/EncodedSeq.pm"
"Bio-Seq","Bio/Seq/LargeSeq.pm"
"Bio-Seq","Bio/Seq/QualI.pm"
"Bio-Seq","Bio/Seq/SeqWithQuality.pm"
"Bio-Seq","Bio/Seq/LargeLocatableSeq.pm"
"Bio-Seq","Bio/Seq/Quality.pm"
"Bio-Seq","Bio/Seq/TraceI.pm"
"Bio-Seq","Bio/Seq/SequenceTrace.pm"
"Bio-Seq-Meta","Bio/Seq/Meta.pm"
"Bio-Seq","Bio/Seq/PrimedSeq.pm"
"Bio-Seq","Bio/Seq/SeqFastaSpeedFactory.pm"
"Bio-Seq","Bio/Seq/SeqBuilder.pm"
"Bio-Seq","Bio/Seq/RichSeqI.pm"
"Bio-Seq","Bio/Seq/BaseSeqProcessor.pm"
"Bio-Seq","Bio/Seq/PrimaryQual.pm"
"Bio-Seq-Meta","Bio/Seq/Meta/Array.pm"
"Bio-Seq","Bio/Seq/LargePrimarySeq.pm"
"Bio-Seq","Bio/Seq/SeqFactory.pm"
"Bio-Seq","Bio/Seq/RichSeq.pm"
,"Bio/IdCollectionI.pm"
"Bio-Analysis","Bio/AnalysisParserI.pm"
"Bio-Ontology","Bio/Ontology/GOterm.pm"
"Bio-Ontology","Bio/Ontology/DocumentRegistry.pm"
"Bio-Ontology","Bio/Ontology/RelationshipFactory.pm"
"Bio-Ontology","Bio/Ontology/Ontology.pm"
"Bio-Ontology","Bio/Ontology/InterProTerm.pm"
"Bio-Ontology","Bio/Ontology/TermI.pm"
"Bio-Ontology","Bio/Ontology/Path.pm"
"Bio-Ontology","Bio/Ontology/TermFactory.pm"
"Bio-Ontology","Bio/Ontology/SimpleGOEngine/GraphAdaptor02.pm"
"Bio-Ontology","Bio/Ontology/SimpleGOEngine/GraphAdaptor.pm"
"Bio-Ontology","Bio/Ontology/Relationship.pm"
"Bio-Ontology","Bio/Ontology/RelationshipI.pm"
"Bio-Ontology","Bio/Ontology/Term.pm"
"Bio-Ontology","Bio/Ontology/OBOEngine.pm"
"Bio-Ontology","Bio/Ontology/OntologyEngineI.pm"
"Bio-Ontology","Bio/Ontology/OntologyI.pm"
"Bio-Ontology","Bio/Ontology/PathI.pm"
"Bio-Ontology","Bio/Ontology/SimpleOntologyEngine.pm"
"Bio-Ontology","Bio/Ontology/OBOterm.pm"
"Bio-Ontology","Bio/Ontology/RelationshipType.pm"
"Bio-Ontology","Bio/Ontology/OntologyStore.pm"
,"Bio/AnnotatableI.pm"
"Bio-Assembly","Bio/Assembly/Contig.pm"
"Bio-Assembly","Bio/Assembly/IO/maq.pm"
"Bio-Assembly","Bio/Assembly/IO/ace.pm"
"Bio-Assembly","Bio/Assembly/IO/phrap.pm"
"Bio-Assembly","Bio/Assembly/IO/sam.pm"
"Bio-Assembly","Bio/Assembly/IO/tigr.pm"
"Bio-Assembly","Bio/Assembly/IO/bowtie.pm"
"Bio-Assembly","Bio/Assembly/ScaffoldI.pm"
"Bio-Assembly","Bio/Assembly/IO.pm"
"Bio-Assembly","Bio/Assembly/Singlet.pm"
"Bio-Assembly","Bio/Assembly/ContigAnalysis.pm"
"Bio-Assembly","Bio/Assembly/Scaffold.pm"
"Bio-Assembly","Bio/Assembly/Tools/ContigSpectrum.pm"
,"Bio/Symbol/DNAAlphabet.pm"
,"Bio/Symbol/README.Symbol"
,"Bio/Symbol/Symbol.pm"
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,"Bio/Symbol/ProteinAlphabet.pm"
,"Bio/Symbol/Alphabet.pm"
,"Bio/Symbol/SymbolI.pm"
,"Bio/MapIO.pm"
,"Bio/WebAgent.pm"
"Bio-Annotation","Bio/Annotation/SimpleValue.pm"
"Bio-Annotation","Bio/Annotation/Relation.pm"
"Bio-Annotation","Bio/Annotation/OntologyTerm.pm"
"Bio-Annotation","Bio/Annotation/TypeManager.pm"
"Bio-Annotation","Bio/Annotation/Tree.pm"
"Bio-Annotation","Bio/Annotation/AnnotationFactory.pm"
"Bio-Annotation","Bio/Annotation/Collection.pm"
"Bio-Annotation","Bio/Annotation/StructuredValue.pm"
"Bio-Annotation","Bio/Annotation/Reference.pm"
"Bio-Annotation","Bio/Annotation/TagTree.pm"
"Bio-Annotation","Bio/Annotation/DBLink.pm"
"Bio-Annotation","Bio/Annotation/Target.pm"
"Bio-Annotation","Bio/Annotation/Comment.pm"
"Bio-Phenotype","Bio/Phenotype/PhenotypeI.pm"
"Bio-Phenotype","Bio/Phenotype/MeSH/Twig.pm"
"Bio-Phenotype","Bio/Phenotype/MeSH/Term.pm"
"Bio-Phenotype","Bio/Phenotype/Phenotype.pm"
"Bio-Phenotype","Bio/Phenotype/Measure.pm"
"Bio-Phenotype","Bio/Phenotype/Correlate.pm"
"Bio-Phenotype","Bio/Phenotype/OMIM/MiniMIMentry.pm"
"Bio-Phenotype","Bio/Phenotype/OMIM/OMIMentry.pm"
"Bio-Phenotype","Bio/Phenotype/OMIM/OMIMparser.pm"
"Bio-Phenotype","Bio/Phenotype/OMIM/OMIMentryAllelicVariant.pm"
"Bio-Index","Bio/Index/BlastTable.pm"
"Bio-Index","Bio/Index/Qual.pm"
"Bio-HMMER","Bio/Index/Hmmer.pm"
"Bio-Index","Bio/Index/Swissprot.pm"
"Bio-Index","Bio/Index/Fasta.pm"
"Bio-Index","Bio/Index/SwissPfam.pm"
"Bio-Index","Bio/Index/AbstractSeq.pm"
"Bio-Index","Bio/Index/Stockholm.pm"
"Bio-Index","Bio/Index/EMBL.pm"
"Bio-Index","Bio/Index/Blast.pm"
"Bio-Index","Bio/Index/Abstract.pm"
"Bio-Index","Bio/Index/GenBank.pm"
"Bio-Index","Bio/Index/Fastq.pm"
"Bio-PhyloNetwork","Bio/PhyloNetwork/TreeFactoryMulti.pm"
"Bio-PhyloNetwork","Bio/PhyloNetwork/TreeFactoryX.pm"
"Bio-PhyloNetwork","Bio/PhyloNetwork/TreeFactory.pm"
"Bio-PhyloNetwork","Bio/PhyloNetwork/FactoryX.pm"
"Bio-PhyloNetwork","Bio/PhyloNetwork/RandomFactory.pm"
"Bio-PhyloNetwork","Bio/PhyloNetwork/GraphViz.pm"
"Bio-PhyloNetwork","Bio/PhyloNetwork/muVector.pm"
"Bio-PhyloNetwork","Bio/PhyloNetwork/Factory.pm"
"Bio-Matrix","Bio/Matrix/IO/mlagan.pm"
"Bio-Matrix","Bio/Matrix/IO/phylip.pm"
"Bio-Matrix","Bio/Matrix/IO/scoring.pm"
"Bio-Matrix","Bio/Matrix/Generic.pm"
"Bio-Matrix","Bio/Matrix/Scoring.pm"
"Bio-Matrix","Bio/Matrix/IO.pm"
"Bio-Matrix","Bio/Matrix/PhylipDist.pm"
"Bio-Matrix","Bio/Matrix/Mlagan.pm"
"Bio-Matrix","Bio/Matrix/MatrixI.pm"
"Bio-Matrix","Bio/Matrix/PSM/IO/mast.pm"
"Bio-Matrix","Bio/Matrix/PSM/IO/psiblast.pm"
"Bio-Matrix","Bio/Matrix/PSM/IO/masta.pm"
"Bio-Matrix","Bio/Matrix/PSM/IO/meme.pm"
"Bio-Matrix","Bio/Matrix/PSM/IO/transfac.pm"
"Bio-Matrix","Bio/Matrix/PSM/SiteMatrixI.pm"
"Bio-Matrix","Bio/Matrix/PSM/SiteMatrix.pm"
"Bio-Matrix","Bio/Matrix/PSM/ProtMatrix.pm"
"Bio-Matrix","Bio/Matrix/PSM/IO.pm"
"Bio-Matrix","Bio/Matrix/PSM/ProtPsm.pm"
"Bio-Matrix","Bio/Matrix/PSM/InstanceSiteI.pm"
"Bio-Matrix","Bio/Matrix/PSM/Psm.pm"
"Bio-Matrix","Bio/Matrix/PSM/PsmHeaderI.pm"
"Bio-Matrix","Bio/Matrix/PSM/InstanceSite.pm"
"Bio-Matrix","Bio/Matrix/PSM/PsmHeader.pm"
"Bio-Matrix","Bio/Matrix/PSM/PsmI.pm"
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"Bio-Search","Bio/SearchIO/axt.pm"
"Bio-Search","Bio/SearchIO/rnamotif.pm"
"Bio-Search","Bio/SearchIO/SearchResultEventBuilder.pm"
"Bio-HMMER","Bio/SearchIO/hmmer_pull.pm"
"Bio-Search","Bio/SearchIO/fasta.pm"
"Bio-Search","Bio/SearchIO/SearchWriterI.pm"
"Bio-Search","Bio/SearchIO/psl.pm"
"Bio-Search","Bio/SearchIO/erpin.pm"
"Bio-Search","Bio/SearchIO/IteratedSearchResultEventBuilder.pm"
"Bio-Search","Bio/SearchIO/cross_match.pm"
"Bio-Search","Bio/SearchIO/EventHandlerI.pm"
"Bio-Search","Bio/SearchIO/exonerate.pm"
"Bio-Search","Bio/SearchIO/gmap_f9.pm"
"Bio-HMMER","Bio/SearchIO/hmmer3.pm"
"Bio-Search","Bio/SearchIO/infernal.pm"
"Bio-Search","Bio/SearchIO/Writer/GbrowseGFF.pm"
"Bio-Search","Bio/SearchIO/Writer/HSPTableWriter.pm"
"Bio-Search","Bio/SearchIO/Writer/BSMLResultWriter.pm"
"Bio-Search","Bio/SearchIO/Writer/HitTableWriter.pm"
"Bio-Search","Bio/SearchIO/Writer/HTMLResultWriter.pm"
"Bio-Search","Bio/SearchIO/Writer/TextResultWriter.pm"
"Bio-Search","Bio/SearchIO/Writer/ResultTableWriter.pm"
"Bio-Search","Bio/SearchIO/megablast.pm"
"Bio-Search","Bio/SearchIO/blastxml.pm"
"Bio-Search","Bio/SearchIO/FastHitEventBuilder.pm"
"Bio-Search","Bio/SearchIO/wise.pm"
"Bio-Search","Bio/SearchIO/blast_pull.pm"
"Bio-Search","Bio/SearchIO/waba.pm"
"Bio-HMMER","Bio/SearchIO/hmmer.pm"
"Bio-Search","Bio/SearchIO/blasttable.pm"
"Bio-Search","Bio/SearchIO/blast.pm"
"Bio-Search","Bio/SearchIO/sim4.pm"
"Bio-Search","Bio/SearchIO/XML/BlastHandler.pm"
"Bio-Search","Bio/SearchIO/XML/PsiBlastHandler.pm"
"Bio-FeatureIO","Bio/FeatureIO/gtf.pm"
"Bio-FeatureIO","Bio/FeatureIO/interpro.pm"
"Bio-FeatureIO","Bio/FeatureIO/bed.pm"
"Bio-FeatureIO","Bio/FeatureIO/gff.pm"
"Bio-FeatureIO","Bio/FeatureIO/vecscreen_simple.pm"
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"Bio-Search","Bio/Search/Tiling/MapTiling.pm"
"Bio-Search","Bio/Search/Tiling/MapTileUtils.pm"
"Bio-Search","Bio/Search/Tiling/TilingI.pm"
"Bio-Search","Bio/Search/SearchUtils.pm"
"Bio-Search","Bio/Search/GenericDatabase.pm"
"Bio-Search","Bio/Search/Iteration/GenericIteration.pm"
"Bio-Search","Bio/Search/Iteration/IterationI.pm"
"Bio-Search","Bio/Search/BlastStatistics.pm"
"Bio-Search","Bio/Search/Processor.pm"
"Bio-Search","Bio/Search/Hit/BlastHit.pm"
"Bio-Search","Bio/Search/Hit/GenericHit.pm"
"Bio-Search","Bio/Search/Hit/Fasta.pm"
"Bio-Search","Bio/Search/Hit/ModelHit.pm"
"Bio-Search","Bio/Search/Hit/HitI.pm"
"Bio-HMMER","Bio/Search/Hit/hmmer3Hit.pm"
"Bio-HMMER","Bio/Search/Hit/HMMERHit.pm"
"Bio-Search","Bio/Search/Hit/PsiBlastHit.pm"
"Bio-Search","Bio/Search/Hit/BlastPullHit.pm"
"Bio-Search","Bio/Search/Hit/HitFactory.pm"
"Bio-Search","Bio/Search/Hit/PullHitI.pm"
"Bio-Search","Bio/Search/Hit/HmmpfamHit.pm"
"Bio-Search","Bio/Search/BlastUtils.pm"
"Bio-Search","Bio/Search/GenericStatistics.pm"
"Bio-Search","Bio/Search/StatisticsI.pm"
"Bio-Search","Bio/Search/HSP/GenericHSP.pm"
"Bio-Search","Bio/Search/HSP/HSPI.pm"
"Bio-Search","Bio/Search/HSP/FastaHSP.pm"
"Bio-Search","Bio/Search/HSP/BlastHSP.pm"
"Bio-Search","Bio/Search/HSP/WABAHSP.pm"
"Bio-Search","Bio/Search/HSP/HmmpfamHSP.pm"
"Bio-Search","Bio/Search/HSP/BlastPullHSP.pm"
"Bio-Search","Bio/Search/HSP/ModelHSP.pm"
"Bio-Search","Bio/Search/HSP/HSPFactory.pm"
"Bio-HMMER","Bio/Search/HSP/HMMERHSP.pm"
"Bio-HMMER","Bio/Search/HSP/hmmer3HSP.pm"
"Bio-Search","Bio/Search/HSP/PSLHSP.pm"
"Bio-Search","Bio/Search/HSP/PsiBlastHSP.pm"
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"Bio-Search","Bio/Search/Result/BlastResult.pm"
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"Bio-Search","Bio/Search/Result/WABAResult.pm"
"Bio-Search","Bio/Search/Result/ResultI.pm"
"Bio-Search","Bio/Search/Result/BlastPullResult.pm"
"Bio-Search","Bio/Search/Result/HmmpfamResult.pm"
"Bio-HMMER","Bio/Search/Result/HMMERResult.pm"
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"Bio-Search","Bio/Search/Result/PullResultI.pm"
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"Bio-Biblio","Bio/Biblio/Organisation.pm"
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"Bio-Biblio","Bio/Biblio/JournalArticle.pm"
"Bio-Biblio","Bio/Biblio/BookArticle.pm"
"Bio-Biblio","Bio/Biblio/Thesis.pm"
"Bio-Biblio","Bio/Biblio/MedlineJournalArticle.pm"
"Bio-Biblio","Bio/Biblio/Article.pm"
"Bio-Biblio","Bio/Biblio/Book.pm"
"Bio-Biblio","Bio/Biblio/MedlineBookArticle.pm"
"Bio-Biblio","Bio/Biblio/Proceeding.pm"
"Bio-Biblio","Bio/Biblio/Person.pm"
"Bio-Biblio","Bio/Biblio/PubmedJournalArticle.pm"
"Bio-Biblio","Bio/Biblio/Provider.pm"
"Bio-Biblio","Bio/Biblio/BiblioBase.pm"
"Bio-Biblio","Bio/Biblio/PubmedBookArticle.pm"
"Bio-Biblio","Bio/Biblio/MedlineBook.pm"
"Bio-Biblio","Bio/Biblio/MedlineJournal.pm"
"Bio-DB","Bio/DB/HIV.pm"
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"Bio-DB-SeqFeature","Bio/DB/SeqFeature/NormalizedFeature.pm"
"Bio-DB-SeqFeature","Bio/DB/SeqFeature/Segment.pm"
"Bio-DB-SeqFeature","Bio/DB/SeqFeature/NormalizedFeatureI.pm"
"Bio-DB-SeqFeature","Bio/DB/SeqFeature/Store/berkeleydb.pm"
"Bio-DB-SeqFeature","Bio/DB/SeqFeature/Store/LoadHelper.pm"
"Bio-DB-SeqFeature","Bio/DB/SeqFeature/Store/GFF2Loader.pm"
"Bio-DB-SeqFeature","Bio/DB/SeqFeature/Store/Loader.pm"
"Bio-DB-SeqFeature","Bio/DB/SeqFeature/Store/DBI/Iterator.pm"
"Bio-DB-SeqFeature","Bio/DB/SeqFeature/Store/DBI/mysql.pm"
"Bio-DB-SeqFeature","Bio/DB/SeqFeature/Store/DBI/SQLite.pm"
"Bio-DB-SeqFeature","Bio/DB/SeqFeature/Store/DBI/Pg.pm"
"Bio-DB-SeqFeature","Bio/DB/SeqFeature/Store/berkeleydb3.pm"
"Bio-DB-SeqFeature","Bio/DB/SeqFeature/Store/GFF3Loader.pm"
"Bio-DB-SeqFeature","Bio/DB/SeqFeature/Store/FeatureFileLoader.pm"
"Bio-DB-SeqFeature","Bio/DB/SeqFeature/Store/bdb.pm"
"Bio-DB-SeqFeature","Bio/DB/SeqFeature/Store/memory.pm"
"Bio-DB-SeqFeature","Bio/DB/SeqFeature/Store.pm"
"Bio-DB-SeqFeature","Bio/DB/SeqFeature/NormalizedTableFeatureI.pm"
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"Bio-DB-GFF","Bio/DB/GFF/Homol.pm"
"Bio-DB-GFF","Bio/DB/GFF/Feature.pm"
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"Bio-DB-GFF","Bio/DB/GFF/Adaptor/memory/feature_serializer.pm"
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"Bio-DB-GFF","Bio/DB/GFF/Adaptor/dbi.pm"
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"Bio-DB-GFF","Bio/DB/GFF/Adaptor/ace.pm"
"Bio-DB-GFF","Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm"
"Bio-DB-GFF","Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm"
"Bio-DB-GFF","Bio/DB/GFF/Adaptor/dbi/caching_handle.pm"
"Bio-DB-GFF","Bio/DB/GFF/Adaptor/dbi/mysql.pm"
"Bio-DB-GFF","Bio/DB/GFF/Adaptor/dbi/pg.pm"
"Bio-DB-GFF","Bio/DB/GFF/Adaptor/dbi/oracleace.pm"
"Bio-DB-GFF","Bio/DB/GFF/Adaptor/dbi/pg_fts.pm"
"Bio-DB-GFF","Bio/DB/GFF/Adaptor/dbi/oracle.pm"
"Bio-DB-GFF","Bio/DB/GFF/Adaptor/dbi/mysqlace.pm"
"Bio-DB-GFF","Bio/DB/GFF/Adaptor/dbi/iterator.pm"
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"Bio-DB-GFF","Bio/DB/GFF/Adaptor/biofetch.pm"
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"Bio-DB-GFF","Bio/DB/GFF/Util/Binning.pm"
"Bio-DB-GFF","Bio/DB/GFF/Util/Rearrange.pm"
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"Bio-DB-GFF","Bio/DB/GFF/Aggregator/coding.pm"
"Bio-DB-GFF","Bio/DB/GFF/Aggregator/ucsc_twinscan.pm"
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"Bio-DB-GFF","Bio/DB/GFF/Aggregator/clone.pm"
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"Bio-DB-GFF","Bio/DB/GFF/Aggregator/orf.pm"
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"Bio-DB-GFF","Bio/DB/GFF/Aggregator/ucsc_refgene.pm"
"Bio-DB-GFF","Bio/DB/GFF/Aggregator/ucsc_genscan.pm"
"Bio-DB-GFF","Bio/DB/GFF/Aggregator/ucsc_softberry.pm"
"Bio-DB-GFF","Bio/DB/GFF/Aggregator/ucsc_sanger22.pm"
"Bio-DB-GFF","Bio/DB/GFF/Aggregator/ucsc_unigene.pm"
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"Bio-DB-GFF","Bio/DB/GFF/Aggregator/so_transcript.pm"
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