# -*-Perl-*- Test Harness script for Bioperl
# $Id$
use strict;
BEGIN {
use lib '.';
use Bio::Root::Test;
test_begin(-tests => 14,
-requires_modules => [qw(IO::String LWP::UserAgent)]);
use_ok('Bio::Tools::Analysis::Protein::Scansite');
use_ok('Bio::SeqIO');
use_ok('Bio::WebAgent');
}
my $verbose = test_debug();
ok my $tool = Bio::WebAgent->new(-verbose =>$verbose);
my $seqio=Bio::SeqIO->new( -verbose => $verbose,
-format => 'swiss',
-file => test_input_file('swiss.dat'));
my $seq = $seqio->next_seq();
ok $tool = Bio::Tools::Analysis::Protein::Scansite->new(
-seq=>$seq->primary_seq);
ok $tool->stringency('Low');
is $tool->stringency(), 'Low';
is $tool->protein_id(), $tool->seq->display_id();
SKIP: {
test_skip(-tests => 6, -requires_networking => 2);
ok $tool->run();
skip "Something wrong with server? Terminated by error, skipping tests", 5 if $tool->status eq 'TERMINATED_BY_ERROR';
ok my $raw = $tool->result('');
print $raw if $verbose;
ok my $parsed = $tool->result('parsed');
is $parsed->[0]{'site'}, 'T101';
ok my @res = $tool->result('Bio::SeqFeatureI');
is $res[0]->start, 101;
}