#---------------------------------------------------------------------------------
# qrna 1.2b (Tue Dec 18 15:04:38 CST 2001) using squid 1.5m (Sept 1997)
#---------------------------------------------------------------------------------
# PAM model = BLOSUM62 scaled by 1.000
#---------------------------------------------------------------------------------
# RNA model = /mix_tied_linux.cfg
#---------------------------------------------------------------------------------
# seq file = ecoli-trna.blast.q
# #seqs: 94 (max_len = 78)
#---------------------------------------------------------------------------------
# full length version: -- length range = [0,1000]
#---------------------------------------------------------------------------------
# 1 [+ strand]
>DA0780-1- (76)
>ECOLI-225501- (76)
length alignment: 76 (id=77.63)
posX: 0-75 [0-72](73) -- (0.18 0.30 0.36 0.16)
posY: 0-75 [0-71](72) -- (0.17 0.29 0.33 0.21)
21.414226 -10.515196 16.075247
19.988807 -3.972533 12.698167
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 0 75
COD ends = 74 0
RNA ends = 0 12
OTH = 20.871 COD = -4.957 RNA = 15.208
logoddspostOTH = 0.000 logoddspostCOD = -25.828 logoddspostRNA = -5.663
# 2 [+ strand]
>DA0780-1- (76)
>ECOLI-4034592- (76)
length alignment: 76 (id=77.63)
posX: 0-75 [0-72](73) -- (0.18 0.30 0.36 0.16)
posY: 0-75 [0-71](72) -- (0.17 0.29 0.33 0.21)
21.414226 -10.515196 16.075247
19.988807 -3.972533 12.698167
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 0 75
COD ends = 74 0
RNA ends = 0 12
OTH = 20.871 COD = -4.957 RNA = 15.208
logoddspostOTH = 0.000 logoddspostCOD = -25.828 logoddspostRNA = -5.663
# 3 [+ strand]
>DA0780-1- (70)
>ECOLI-3979754- (70)
length alignment: 70 (id=72.86)
posX: 0-69 [0-68](69) -- (0.17 0.29 0.38 0.16)
posY: 0-69 [0-69](70) -- (0.16 0.30 0.36 0.19)
21.384909 12.463364 22.249356
21.249381 17.921616 22.037246
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = RNA
OTH ends = 0 69
COD ends = 68 1
RNA ends = 3 69
OTH = 21.319 COD = 16.954 RNA = 22.147
logoddspostOTH = 0.000 logoddspostCOD = -4.365 logoddspostRNA = 0.828
# 4 [+ strand]
>DA0780-8- (56)
>ECOLI-779995- (56)
length alignment: 56 (id=71.43)
posX: 0-55 [0-55](56) -- (0.20 0.29 0.34 0.18)
posY: 0-55 [0-54](55) -- (0.18 0.29 0.35 0.18)
14.761275 -0.369781 17.076846
14.838704 10.225100 21.877122
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = RNA
OTH ends = 55 0
COD ends = 54 0
RNA ends = 35 19
OTH = 14.801 COD = 9.226 RNA = 20.928
logoddspostOTH = 0.000 logoddspostCOD = -5.574 logoddspostRNA = 6.127
# 5 [+ strand]
>DA0780-8- (56)
>ECOLI-780298- (56)
length alignment: 56 (id=71.43)
posX: 0-55 [0-55](56) -- (0.20 0.29 0.34 0.18)
posY: 0-55 [0-54](55) -- (0.18 0.29 0.35 0.18)
14.761275 -0.369781 17.076846
14.838704 10.225100 21.877122
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = RNA
OTH ends = 55 0
COD ends = 54 0
RNA ends = 35 19
OTH = 14.801 COD = 9.226 RNA = 20.928
logoddspostOTH = 0.000 logoddspostCOD = -5.574 logoddspostRNA = 6.127
# 6 [+ strand]
>DA0780-8- (56)
>ECOLI-2518730- (56)
length alignment: 56 (id=71.43)
posX: 0-55 [0-55](56) -- (0.20 0.29 0.34 0.18)
posY: 0-55 [0-54](55) -- (0.18 0.29 0.35 0.18)
14.761275 -0.369781 17.076846
14.838704 10.225100 21.877122
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = RNA
OTH ends = 55 0
COD ends = 54 0
RNA ends = 35 19
OTH = 14.801 COD = 9.226 RNA = 20.928
logoddspostOTH = 0.000 logoddspostCOD = -5.574 logoddspostRNA = 6.127
# 7 [+ strand]
>DA0780-8- (56)
>ECOLI-2518850- (56)
length alignment: 56 (id=71.43)
posX: 0-55 [0-55](56) -- (0.20 0.29 0.34 0.18)
posY: 0-55 [0-54](55) -- (0.18 0.29 0.35 0.18)
14.761275 -0.369781 17.076846
14.838704 10.225100 21.877122
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = RNA
OTH ends = 55 0
COD ends = 54 0
RNA ends = 35 19
OTH = 14.801 COD = 9.226 RNA = 20.928
logoddspostOTH = 0.000 logoddspostCOD = -5.574 logoddspostRNA = 6.127
# 8 [+ strand]
>DA0780-8- (56)
>ECOLI-2518972- (56)
length alignment: 56 (id=71.43)
posX: 0-55 [0-55](56) -- (0.20 0.29 0.34 0.18)
posY: 0-55 [0-54](55) -- (0.18 0.29 0.35 0.18)
14.761275 -0.369781 17.076846
14.838704 10.225100 21.877122
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = RNA
OTH ends = 55 0
COD ends = 54 0
RNA ends = 35 19
OTH = 14.801 COD = 9.226 RNA = 20.928
logoddspostOTH = 0.000 logoddspostCOD = -5.574 logoddspostRNA = 6.127
# 9 [+ strand]
>DA0780-2- (73)
>ECOLI-2284230- (73)
length alignment: 73 (id=64.38)
posX: 0-72 [0-71](72) -- (0.18 0.31 0.35 0.17)
posY: 0-72 [0-72](73) -- (0.15 0.27 0.38 0.19)
13.918545 -8.608490 24.007519
15.073192 7.016852 12.344431
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = RNA
OTH ends = 72 0
COD ends = 72 0
RNA ends = 0 70
OTH = 14.608 COD = 6.017 RNA = 23.008
logoddspostOTH = 0.000 logoddspostCOD = -8.592 logoddspostRNA = 8.400
# 10 [+ strand]
>DA0780-7- (59)
>ECOLI-2945191- (59)
length alignment: 59 (id=67.80)
posX: 0-58 [0-55](56) -- (0.20 0.27 0.36 0.18)
posY: 0-58 [0-56](57) -- (0.19 0.28 0.32 0.21)
7.994668 -17.443195 7.730549
8.785962 -9.672509 13.155362
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = RNA
OTH ends = 58 0
COD ends = 58 1
RNA ends = 39 21
OTH = 8.444 COD = -10.666 RNA = 12.189
logoddspostOTH = 0.000 logoddspostCOD = -19.110 logoddspostRNA = 3.745
# 11 [+ strand]
>DA0780-7- (59)
>ECOLI-2945301- (59)
length alignment: 59 (id=67.80)
posX: 0-58 [0-55](56) -- (0.20 0.27 0.36 0.18)
posY: 0-58 [0-56](57) -- (0.19 0.28 0.32 0.21)
7.994668 -17.443195 7.730549
8.785962 -9.672509 13.155362
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = RNA
OTH ends = 58 0
COD ends = 58 1
RNA ends = 39 21
OTH = 8.444 COD = -10.666 RNA = 12.189
logoddspostOTH = 0.000 logoddspostCOD = -19.110 logoddspostRNA = 3.745
# 12 [+ strand]
>DA0780-7- (59)
>ECOLI-2945411- (59)
length alignment: 59 (id=67.80)
posX: 0-58 [0-55](56) -- (0.20 0.27 0.36 0.18)
posY: 0-58 [0-56](57) -- (0.19 0.28 0.32 0.21)
7.994668 -17.443195 7.730549
8.785962 -9.672509 13.155362
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = RNA
OTH ends = 58 0
COD ends = 58 1
RNA ends = 39 21
OTH = 8.444 COD = -10.666 RNA = 12.189
logoddspostOTH = 0.000 logoddspostCOD = -19.110 logoddspostRNA = 3.745
# 13 [+ strand]
>DA0780-1- (76)
>ECOLI-3424373- (76)
length alignment: 76 (id=77.63)
posX: 0-75 [0-72](73) -- (0.16 0.36 0.30 0.18)
posY: 0-75 [0-71](72) -- (0.21 0.33 0.29 0.17)
20.682006 -9.755632 13.248665
21.241284 -22.237923 16.258281
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 75 0
COD ends = 1 68
RNA ends = 75 63
OTH = 20.989 COD = -10.755 RNA = 15.427
logoddspostOTH = 0.000 logoddspostCOD = -31.744 logoddspostRNA = -5.561
# 14 [+ strand]
>DA0780-6- (71)
>ECOLI-2815582- (71)
length alignment: 71 (id=71.83)
posX: 0-70 [0-67](68) -- (0.16 0.34 0.31 0.19)
posY: 0-70 [0-68](69) -- (0.19 0.32 0.28 0.22)
16.431838 -14.269383 12.463979
16.326307 -7.331733 13.720289
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 0 70
COD ends = 70 1
RNA ends = 24 8
OTH = 16.380 COD = -8.320 RNA = 13.225
logoddspostOTH = 0.000 logoddspostCOD = -24.700 logoddspostRNA = -3.155
# 15 [+ strand]
>DA0780-6- (71)
>ECOLI-2815857- (71)
length alignment: 71 (id=71.83)
posX: 0-70 [0-67](68) -- (0.16 0.34 0.31 0.19)
posY: 0-70 [0-68](69) -- (0.19 0.32 0.28 0.22)
16.431838 -14.269383 12.463979
16.326307 -7.331733 13.720289
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 0 70
COD ends = 70 1
RNA ends = 24 8
OTH = 16.380 COD = -8.320 RNA = 13.225
logoddspostOTH = 0.000 logoddspostCOD = -24.700 logoddspostRNA = -3.155
# 16 [+ strand]
>DA0780-6- (71)
>ECOLI-2815996- (71)
length alignment: 71 (id=71.83)
posX: 0-70 [0-67](68) -- (0.16 0.34 0.31 0.19)
posY: 0-70 [0-68](69) -- (0.19 0.32 0.28 0.22)
16.431838 -14.269383 12.463979
16.326307 -7.331733 13.720289
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 0 70
COD ends = 70 1
RNA ends = 24 8
OTH = 16.380 COD = -8.320 RNA = 13.225
logoddspostOTH = 0.000 logoddspostCOD = -24.700 logoddspostRNA = -3.155
# 17 [+ strand]
>DA0780-6- (71)
>ECOLI-2816271- (71)
length alignment: 71 (id=71.83)
posX: 0-70 [0-67](68) -- (0.16 0.34 0.31 0.19)
posY: 0-70 [0-68](69) -- (0.19 0.32 0.28 0.22)
16.431838 -14.269383 12.463979
16.326307 -7.331733 13.720289
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 0 70
COD ends = 70 1
RNA ends = 24 8
OTH = 16.380 COD = -8.320 RNA = 13.225
logoddspostOTH = 0.000 logoddspostCOD = -24.700 logoddspostRNA = -3.155
# 18 [+ strand]
>DA0780-1- (76)
>ECOLI-2515836- (76)
length alignment: 76 (id=71.05)
posX: 0-75 [0-72](73) -- (0.16 0.36 0.30 0.18)
posY: 0-75 [0-71](72) -- (0.21 0.33 0.26 0.19)
14.736984 -14.375325 8.884532
14.851236 -24.156886 9.868232
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 75 0
COD ends = 1 75
RNA ends = 75 63
OTH = 14.795 COD = -15.374 RNA = 9.459
logoddspostOTH = 0.000 logoddspostCOD = -30.169 logoddspostRNA = -5.337
# 19 [+ strand]
>DA0780-1- (76)
>ECOLI-2515951- (76)
length alignment: 76 (id=71.05)
posX: 0-75 [0-72](73) -- (0.16 0.36 0.30 0.18)
posY: 0-75 [0-71](72) -- (0.21 0.33 0.26 0.19)
14.736984 -14.375325 8.884532
14.851236 -24.156886 9.868232
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 75 0
COD ends = 1 75
RNA ends = 75 63
OTH = 14.795 COD = -15.374 RNA = 9.459
logoddspostOTH = 0.000 logoddspostCOD = -30.169 logoddspostRNA = -5.337
# 20 [+ strand]
>DA0780-6- (52)
>ECOLI-2155594- (52)
length alignment: 52 (id=71.15)
posX: 0-51 [0-48](49) -- (0.16 0.41 0.27 0.16)
posY: 0-51 [0-48](49) -- (0.18 0.41 0.29 0.12)
5.862400 -19.930995 -1.194701
7.783836 -15.355771 0.726735
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 51 0
COD ends = 50 0
RNA ends = 52 52
OTH = 7.122 COD = -16.296 RNA = 0.065
logoddspostOTH = 0.000 logoddspostCOD = -23.418 logoddspostRNA = -7.057
# 21 [+ strand]
>DA0780-7- (59)
>ECOLI-3315645- (59)
length alignment: 59 (id=66.10)
posX: 0-58 [0-55](56) -- (0.18 0.36 0.27 0.20)
posY: 0-58 [0-56](57) -- (0.21 0.30 0.28 0.21)
7.886726 -12.920042 12.597060
6.999592 -16.997763 6.986972
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = RNA
OTH ends = 0 58
COD ends = 0 58
RNA ends = 20 36
OTH = 7.510 COD = -13.837 RNA = 11.626
logoddspostOTH = 0.000 logoddspostCOD = -21.347 logoddspostRNA = 4.116
# 22 [+ strand]
>DA0940-1- (77)
>ECOLI-225500- (77)
length alignment: 77 (id=75.32)
posX: 0-76 [0-75](76) -- (0.14 0.34 0.37 0.14)
posY: 0-76 [0-74](75) -- (0.16 0.31 0.33 0.20)
24.181055 -0.353323 26.401988
23.109013 11.590026 23.929123
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = RNA
OTH ends = 0 76
COD ends = 76 0
RNA ends = 0 73
OTH = 23.742 COD = 10.590 RNA = 25.641
logoddspostOTH = 0.000 logoddspostCOD = -13.152 logoddspostRNA = 1.899
# 23 [+ strand]
>DA0940-1- (77)
>ECOLI-4034591- (77)
length alignment: 77 (id=75.32)
posX: 0-76 [0-75](76) -- (0.14 0.34 0.37 0.14)
posY: 0-76 [0-74](75) -- (0.16 0.31 0.33 0.20)
24.181055 -0.353323 26.401988
23.109013 11.590026 23.929123
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = RNA
OTH ends = 0 76
COD ends = 76 0
RNA ends = 0 73
OTH = 23.742 COD = 10.590 RNA = 25.641
logoddspostOTH = 0.000 logoddspostCOD = -13.152 logoddspostRNA = 1.899
# 24 [+ strand]
>DA0940-1- (77)
>ECOLI-779777- (77)
length alignment: 77 (id=70.13)
posX: 0-76 [0-75](76) -- (0.14 0.34 0.37 0.14)
posY: 0-76 [0-74](75) -- (0.21 0.24 0.27 0.28)
19.326669 -6.735706 19.727199
19.360233 -2.001147 14.966454
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 76 0
COD ends = 74 1
RNA ends = 0 73
OTH = 19.344 COD = -2.948 RNA = 18.779
logoddspostOTH = 0.000 logoddspostCOD = -22.291 logoddspostRNA = -0.564
# 25 [+ strand]
>DA0940-1- (77)
>ECOLI-780066- (77)
length alignment: 77 (id=70.13)
posX: 0-76 [0-75](76) -- (0.14 0.34 0.37 0.14)
posY: 0-76 [0-74](75) -- (0.21 0.24 0.27 0.28)
19.326669 -6.735706 19.727199
19.360233 -2.001147 14.966454
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 76 0
COD ends = 74 1
RNA ends = 0 73
OTH = 19.344 COD = -2.948 RNA = 18.779
logoddspostOTH = 0.000 logoddspostCOD = -22.291 logoddspostRNA = -0.564
# 26 [+ strand]
>DA0940-1- (77)
>ECOLI-780370- (77)
length alignment: 77 (id=70.13)
posX: 0-76 [0-75](76) -- (0.14 0.34 0.37 0.14)
posY: 0-76 [0-74](75) -- (0.21 0.24 0.27 0.28)
19.326669 -6.735706 19.727199
19.360233 -2.001147 14.966454
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 76 0
COD ends = 74 1
RNA ends = 0 73
OTH = 19.344 COD = -2.948 RNA = 18.779
logoddspostOTH = 0.000 logoddspostCOD = -22.291 logoddspostRNA = -0.564
# 27 [+ strand]
>DA0940-1- (77)
>ECOLI-780592- (77)
length alignment: 77 (id=70.13)
posX: 0-76 [0-75](76) -- (0.14 0.34 0.37 0.14)
posY: 0-76 [0-74](75) -- (0.21 0.24 0.27 0.28)
19.326669 -6.735706 19.727199
19.360233 -2.001147 14.966454
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 76 0
COD ends = 74 1
RNA ends = 0 73
OTH = 19.344 COD = -2.948 RNA = 18.779
logoddspostOTH = 0.000 logoddspostCOD = -22.291 logoddspostRNA = -0.564
# 28 [+ strand]
>DA0940-1- (77)
>ECOLI-780800- (77)
length alignment: 77 (id=70.13)
posX: 0-76 [0-75](76) -- (0.14 0.34 0.37 0.14)
posY: 0-76 [0-74](75) -- (0.21 0.24 0.27 0.28)
19.326669 -6.735706 19.727199
19.360233 -2.001147 14.966454
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 76 0
COD ends = 74 1
RNA ends = 0 73
OTH = 19.344 COD = -2.948 RNA = 18.779
logoddspostOTH = 0.000 logoddspostCOD = -22.291 logoddspostRNA = -0.564
# 29 [+ strand]
>DA0940-1- (77)
>ECOLI-2519045- (77)
length alignment: 77 (id=70.13)
posX: 0-76 [0-75](76) -- (0.14 0.34 0.37 0.14)
posY: 0-76 [0-74](75) -- (0.21 0.24 0.27 0.28)
19.326669 -6.735706 19.727199
19.360233 -2.001147 14.966454
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 76 0
COD ends = 74 1
RNA ends = 0 73
OTH = 19.344 COD = -2.948 RNA = 18.779
logoddspostOTH = 0.000 logoddspostCOD = -22.291 logoddspostRNA = -0.564
# 30 [+ strand]
>DA0940-1- (78)
>ECOLI-563946- (78)
length alignment: 78 (id=69.23)
posX: 0-77 [0-75](76) -- (0.14 0.34 0.37 0.14)
posY: 0-77 [0-75](76) -- (0.18 0.30 0.32 0.20)
17.963663 -9.269558 17.104482
18.280556 -6.326426 22.143566
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = RNA
OTH ends = 77 0
COD ends = 72 1
RNA ends = 44 28
OTH = 18.131 COD = -7.150 RNA = 21.187
logoddspostOTH = 0.000 logoddspostCOD = -25.281 logoddspostRNA = 3.056
# 31 [+ strand]
>DA0940-1- (78)
>ECOLI-3979754- (78)
length alignment: 78 (id=69.23)
posX: 0-77 [0-75](76) -- (0.14 0.34 0.37 0.14)
posY: 0-77 [0-75](76) -- (0.14 0.33 0.36 0.17)
18.718315 -12.877073 20.514241
18.551819 -5.649083 11.109117
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = RNA
OTH ends = 0 77
COD ends = 76 1
RNA ends = 0 74
OTH = 18.637 COD = -6.639 RNA = 19.516
logoddspostOTH = 0.000 logoddspostCOD = -25.277 logoddspostRNA = 0.879
# 32 [+ strand]
>DA0940-2- (75)
>ECOLI-3980115- (75)
length alignment: 75 (id=64.00)
posX: 0-74 [0-74](75) -- (0.15 0.35 0.36 0.15)
posY: 0-74 [0-74](75) -- (0.16 0.27 0.36 0.21)
16.673417 5.650160 34.947176
16.791520 4.389619 18.597200
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = RNA
OTH ends = 74 0
COD ends = 2 73
RNA ends = 0 70
OTH = 16.734 COD = 5.153 RNA = 33.947
logoddspostOTH = 0.000 logoddspostCOD = -11.580 logoddspostRNA = 17.214
# 33 [+ strand]
>DA0940-8- (58)
>ECOLI-3979896- (58)
length alignment: 58 (id=68.97)
posX: 0-57 [0-56](57) -- (0.18 0.32 0.33 0.18)
posY: 0-57 [0-55](56) -- (0.16 0.21 0.30 0.32)
11.514323 -1.612738 9.963681
11.181613 -0.641287 8.426787
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 0 57
COD ends = 57 0
RNA ends = 20 37
OTH = 11.358 COD = -1.047 RNA = 9.391
logoddspostOTH = 0.000 logoddspostCOD = -12.404 logoddspostRNA = -1.967
# 34 [+ strand]
>DA0940-1- (77)
>ECOLI-3424371- (77)
length alignment: 77 (id=75.32)
posX: 0-76 [0-75](76) -- (0.14 0.37 0.34 0.14)
posY: 0-76 [0-74](75) -- (0.20 0.33 0.31 0.16)
23.109013 5.520843 24.913393
24.181055 9.917873 33.181724
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = RNA
OTH ends = 76 0
COD ends = 76 2
RNA ends = 76 3
OTH = 23.742 COD = 8.985 RNA = 32.186
logoddspostOTH = 0.000 logoddspostCOD = -14.758 logoddspostRNA = 8.444
# 35 [+ strand]
>DA0940-1- (77)
>ECOLI-2515834- (77)
length alignment: 77 (id=70.13)
posX: 0-76 [0-75](76) -- (0.14 0.37 0.34 0.14)
posY: 0-76 [0-74](75) -- (0.20 0.33 0.28 0.19)
18.645991 3.152473 25.533618
18.627918 3.690656 29.967242
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = RNA
OTH ends = 0 76
COD ends = 76 2
RNA ends = 76 3
OTH = 18.637 COD = 3.447 RNA = 29.033
logoddspostOTH = 0.000 logoddspostCOD = -15.190 logoddspostRNA = 10.396
# 36 [+ strand]
>DA0940-1- (77)
>ECOLI-2515949- (77)
length alignment: 77 (id=70.13)
posX: 0-76 [0-75](76) -- (0.14 0.37 0.34 0.14)
posY: 0-76 [0-74](75) -- (0.20 0.33 0.28 0.19)
18.645991 3.152473 25.533618
18.627918 3.690656 29.967242
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = RNA
OTH ends = 0 76
COD ends = 76 2
RNA ends = 76 3
OTH = 18.637 COD = 3.447 RNA = 29.033
logoddspostOTH = 0.000 logoddspostCOD = -15.190 logoddspostRNA = 10.396
# 37 [+ strand]
>DA0940-5- (76)
>ECOLI-2815580- (76)
length alignment: 76 (id=71.05)
posX: 0-75 [0-71](72) -- (0.15 0.35 0.35 0.15)
posY: 0-75 [0-71](72) -- (0.18 0.31 0.31 0.21)
13.333636 -36.156781 13.057277
13.159042 -36.377514 9.144681
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 0 75
COD ends = 0 73
RNA ends = 32 52
OTH = 13.249 COD = -36.263 RNA = 12.150
logoddspostOTH = 0.000 logoddspostCOD = -49.512 logoddspostRNA = -1.099
# 38 [+ strand]
>DA0940-5- (76)
>ECOLI-2815855- (76)
length alignment: 76 (id=71.05)
posX: 0-75 [0-71](72) -- (0.15 0.35 0.35 0.15)
posY: 0-75 [0-71](72) -- (0.18 0.31 0.31 0.21)
13.333636 -36.156781 13.057277
13.159042 -36.377514 9.144681
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 0 75
COD ends = 0 73
RNA ends = 32 52
OTH = 13.249 COD = -36.263 RNA = 12.150
logoddspostOTH = 0.000 logoddspostCOD = -49.512 logoddspostRNA = -1.099
# 39 [+ strand]
>DA0940-5- (76)
>ECOLI-2815994- (76)
length alignment: 76 (id=71.05)
posX: 0-75 [0-71](72) -- (0.15 0.35 0.35 0.15)
posY: 0-75 [0-71](72) -- (0.18 0.31 0.31 0.21)
13.333636 -36.156781 13.057277
13.159042 -36.377514 9.144681
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 0 75
COD ends = 0 73
RNA ends = 32 52
OTH = 13.249 COD = -36.263 RNA = 12.150
logoddspostOTH = 0.000 logoddspostCOD = -49.512 logoddspostRNA = -1.099
# 40 [+ strand]
>DA0940-5- (76)
>ECOLI-2816269- (76)
length alignment: 76 (id=71.05)
posX: 0-75 [0-71](72) -- (0.15 0.35 0.35 0.15)
posY: 0-75 [0-71](72) -- (0.18 0.31 0.31 0.21)
13.333636 -36.156781 13.057277
13.159042 -36.377514 9.144681
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 0 75
COD ends = 0 73
RNA ends = 32 52
OTH = 13.249 COD = -36.263 RNA = 12.150
logoddspostOTH = 0.000 logoddspostCOD = -49.512 logoddspostRNA = -1.099
# 41 [+ strand]
>DA0940-9- (69)
>ECOLI-1804478- (69)
length alignment: 69 (id=66.67)
posX: 0-68 [0-67](68) -- (0.15 0.34 0.35 0.16)
posY: 0-68 [0-66](67) -- (0.13 0.39 0.31 0.16)
10.953909 -9.639667 10.662024
12.823044 -5.075973 10.777964
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 68 0
COD ends = 66 1
RNA ends = 51 31
OTH = 12.172 COD = -6.016 RNA = 10.721
logoddspostOTH = 0.000 logoddspostCOD = -18.188 logoddspostRNA = -1.451
# 42 [+ strand]
>DA0940-8- (58)
>ECOLI-3706024- (58)
length alignment: 58 (id=68.97)
posX: 0-57 [0-55](56) -- (0.18 0.34 0.30 0.18)
posY: 0-57 [0-55](56) -- (0.20 0.39 0.25 0.16)
9.771742 -15.688073 2.357499
9.187335 -13.325765 1.773092
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 0 57
COD ends = 55 1
RNA ends = -1 -1
OTH = 9.509 COD = -14.069 RNA = 2.095
logoddspostOTH = 0.000 logoddspostCOD = -23.578 logoddspostRNA = -7.414
# 43 [+ strand]
>DA0940-7- (73)
>ECOLI-695888- (73)
length alignment: 73 (id=64.38)
posX: 0-72 [0-69](70) -- (0.16 0.34 0.34 0.16)
posY: 0-72 [0-69](70) -- (0.24 0.26 0.26 0.24)
10.281468 -22.207847 3.873799
9.636380 -19.716135 1.831177
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 0 72
COD ends = 72 1
RNA ends = 10 26
OTH = 9.995 COD = -20.480 RNA = 3.187
logoddspostOTH = 0.000 logoddspostCOD = -30.475 logoddspostRNA = -6.807
# 44 [+ strand]
>DA0940-7- (73)
>ECOLI-696281- (73)
length alignment: 73 (id=64.38)
posX: 0-72 [0-69](70) -- (0.16 0.34 0.34 0.16)
posY: 0-72 [0-69](70) -- (0.24 0.26 0.26 0.24)
10.281468 -22.207847 3.873799
9.636380 -19.716135 1.831177
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 0 72
COD ends = 72 1
RNA ends = 10 26
OTH = 9.995 COD = -20.480 RNA = 3.187
logoddspostOTH = 0.000 logoddspostCOD = -30.475 logoddspostRNA = -6.807
# 45 [+ strand]
>DA0940-6- (62)
>ECOLI-695990- (62)
length alignment: 62 (id=62.90)
posX: 0-61 [0-60](61) -- (0.16 0.38 0.30 0.16)
posY: 0-61 [0-60](61) -- (0.25 0.30 0.26 0.20)
10.452429 5.015902 10.936383
9.772183 2.186248 11.450894
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = RNA
OTH ends = 0 61
COD ends = 0 61
RNA ends = 38 22
OTH = 10.152 COD = 4.206 RNA = 11.216
logoddspostOTH = 0.000 logoddspostCOD = -5.946 logoddspostRNA = 1.064
# 46 [+ strand]
>DA0940-6- (62)
>ECOLI-696099- (62)
length alignment: 62 (id=62.90)
posX: 0-61 [0-60](61) -- (0.16 0.38 0.30 0.16)
posY: 0-61 [0-60](61) -- (0.25 0.30 0.26 0.20)
10.452429 5.015902 10.936383
9.772183 2.186248 11.450894
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = RNA
OTH ends = 0 61
COD ends = 0 61
RNA ends = 38 22
OTH = 10.152 COD = 4.206 RNA = 11.216
logoddspostOTH = 0.000 logoddspostCOD = -5.946 logoddspostRNA = 1.064
# 47 [+ strand]
>DA0940-10- (69)
>ECOLI-2816349- (69)
length alignment: 69 (id=63.77)
posX: 0-68 [0-66](67) -- (0.15 0.34 0.36 0.15)
posY: 0-68 [0-65](66) -- (0.18 0.27 0.36 0.18)
9.155278 -17.238488 5.252253
9.115589 -17.289968 6.575597
LOCAL_DIAG_VITERBI -- [Inside SCFG]
winner = OTH
OTH ends = 0 68
COD ends = 0 56
RNA ends = 26 10
OTH = 9.136 COD = -17.264 RNA = 6.061
logoddspostOTH = 0.000 logoddspostCOD = -26.400 logoddspostRNA = -3.075