CM 1: Purine
CM statistics calculated with simulation of 100 samples of length 238
Random seed: 1186083728
No partition points
Using CM E cutoff of 200.00
>gi|633168|emb|X83878.1|
Plus strand results:
Query = 1 - 102, Target = 168 - 267
Score = 79.36, E = 1.945e-07, P = 1.945e-07, GC = 46
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
+ A A++A AA A AA:AC+C:UAUAAU::CG:G AUAUGGC:CG::AGUUUCUACC:G
168 UUACAAUAUAAUAGGAACACUCAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGG 227
<<<<_______>>>>>>>,,))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
CA CCGUAAA UG C:GACUA:G+GU:A A+U A+
228 GCA-CCGUAAA-UGUCCGACUAUGGGUGAGCAAUGGAACCGC 267
Minus strand results:
Query = 1 - 102, Target = 270 - 171
Score = 2.25, E = 6.802, P = 0.9989, GC = 48
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
+ + A +:AC C:UA +::: :: UA GG :: :::GU AC: G
270 CGUGCGGUUCCAUUGCUCACCCAUA-GUCGGACAU-UUACGG-UGCCCGGUAGAAACUUG 214
<<<<_______>>>>>>>,,.))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGAC.UAcGaGuaAauauuaaauauuu 102
::::CC UA ::::C : UA:G GU: + U+++AUAUU
213 CGUGCCAUAUCCACGCGAUUaUAUGAGUGUUCCUAUUAUAUUG 171
>gi|2239287|gb|U51115.1|BSU51115
Plus strand results:
Query = 1 - 102, Target = 11655 - 11756
Score = 81.29, E = 1.259e-07, P = 1.259e-07, GC = 38
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
A AAAU AAA+AA A+ : CGUAUAAU::CG:GAAUAUGGC:CG::AGU UCUACCA:
11655 AGAAAUCAAAUAAGAUGAAUUCGUAUAAUCGCGGGAAUAUGGCUCGCAAGUCUCUACCAA 11714
<<<<_______>>>>>>>,,))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
GC ACCGUAAAU GC:UGACUACG : AU+U +++ UUU
11715 GCUACCGUAAAUGGCUUGACUACGUAAACAUUUCUUUCGUUU 11756
Query = 1 - 102, Target = 15589 - 15691
Score = 78.40, E = 2.415e-07, P = 2.415e-07, GC = 42
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
A+ A+A+ AAAA A :CUC:UAUAAU: :GGGAAUAUGGCCC: :AGUUUCUACC:G
15589 CAUGAAAUCAAAACACGACCUCAUAUAAUCUUGGGAAUAUGGCCCAUAAGUUUCUACCCG 15648
<<<<_______>>>>>>>,,)))).))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcG.aGuaAauauuaaauauuu 102
GCAACCGUAAAUUGCC:GACUA:G AG: AA + ++ +++++
15649 GCAACCGUAAAUUGCCGGACUAUGcAGGGAAGUGAUCGAUAAA 15691
Query = 1 - 102, Target = 13198 - 13294
Score = 5.41, E = 3.338, P = 0.9645, GC = 34
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
+A+ +U + AAAA AA : :U:::A AA:C::::G A UGGC::::G: UUU U ::
13198 UAUCUUCUUAAAAUAAGGAAUGAAAAAACCAGCUGCAC-UGGCAGCUGGUUUUUUUUGU- 13255
<<<<_______>>>>>>>,,))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
: C AA :U+++:: U:::A: : AUAU+ U +U
13256 ---UGCAAAAGAUAAAACCAUUUCAUACGAUAUACCGUCAUG 13294
Minus strand results:
Query = 1 - 102, Target = 11759 - 11658
Score = 9.64, E = 1.287, P = 0.7239, GC = 38
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
A AA+ AAA AAA+ : CGUA +::::: : UA GG: :::::GU AC: G
11759 AUCAAACGAAAGAAAUGUUUACGUA-GUCAAGCCAUUUACGGUAGCUUGGUAGAGACUUG 11701
<<<<_______>>>>>>>,,.))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGAC.UAcGaGuaAauauuaaauauuu 102
:: :CC UA : ::C : UACG : AU UUA++U +UU
11700 CGAGCCAUAUUCCCGCGAUUaUACGAAUUCAUCUUAUUUGAUU 11658
Query = 1 - 102, Target = 15695 - 15594
Score = 7.88, E = 1.911, P = 0.8521, GC = 43
:::::::::::::::::((((((((,,.,<<<<<<<_______>>>>>>>,,,,,,,,<<
1 aAaaauaaAaaaaaaaauaCuCgUAUA.aucucgggAAUAUGGcccgagaGUuUCUACCa 59
A ++U+A A A ++ C :: AUA +:C::::: UA GG:::::G:GU AC::
15695 CAGUUUUAUCGAUCACUUCCCUGCAUAgUCCGGCAAUUUACGGUUGCCGGGUAGAAACUU 15636
<<<<<_______>>>>>>>,,))))))))::::::::::::::
60 GgcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
+::::CC UA :::: ::A U :: G + + U++++U +UU
15635 AUGGGCCAUAUUCCCA-AGAUUAUAUGAGGUCGUGUUUUGAUU 15594
Query = 1 - 102, Target = 13846 - 13740
Score = 6.35, E = 2.7, P = 0.9328, GC = 45
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,.....
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCU..... 55
A A+A+A A AA AA:A :::A A :C ::::A A G :::: G: UUCU
13846 CAGCAAAUACACAAGAACAACUAAAAACCCGUCAUAGAAAGCAUGAUGGCGUUCUccgaa 13787
,,<<<<<<<_______>>>>>>>,,))))))))::::::::::::::
56 ACCaGgcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
ACC::GC :CCG : GC::G CU::: U:AA+ +A++ ++
13786 ACCGAGCGGCCGAUUCCAGCUUGCCUUUAACUGAAACCAAUUCCCAA 13740
Query = 1 - 102, Target = 825 - 748
Score = 2.84, E = 5.952, P = 0.9974, GC = 30
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
+AAAA+ AA AAAA A: ::C:U:U A UG C+ A A UCUAC
825 UAAAAACAACAAAAGGAGCUGCUUUUUA-----------UGCUCACACACGAUCUAC--- 780
<<<<_______>>>>>>>,,))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
G AAA +AC:A:G:: :A ++UU AU+U+U
779 ----AUGAAAA------AACAAAGCAUUACAUUUCCAUUUAU 748
Query = 1 - 102, Target = 8105 - 8018
Score = 1.70, E = 7.686, P = 0.9995, GC = 36
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
A+A A +A AA U:::AU A UAUGGC ++A+ GU UC A
8105 GAUACGGAUUACGGCAAAAGUGGCAUCA---------UAUGGCGUAAAGGUAUCAAG--- 8058
<<<<_______>>>>>>>,,))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
A CGUAA U+C ACU:::A AA+A +AAA+ +++
8057 --AAUCGUAAUAUACGCUACUGUCAUCAAAAAGAAAAACAAA 8018
Query = 1 - 102, Target = 4125 - 4023
Score = 1.38, E = 8.261, P = 0.9997, GC = 25
:::::::::::::::::((((((((,,,<<<<<<<_______.>>>.>>>>,,,,,,,,<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGG.ccc.gagaGUuUCUACC 58
AAA +AAA A A AA: :U:::AUAA :+:G:: AU U ::C :+: UUUC AC
4125 CAAACAAAACACUACAAAUUUGAAAUAAGCUGGUAUAUUUUCuUACaCGAAUUUUCGAC- 4067
<<<<<<_______>>>...>>>>,,))))))))::::::::::::::
59 aGgcaaCCGUAAAuug...cCuGACUAcGaGuaAauauuaaauauuu 102
:AAC GUA AUU: + +GA U:::A: :A+ AU+A+AU+ +
4066 ---AAACUGUAUAUUUaugAUAGAGUUUCAAUUAUCAUAAUAUUCAG 4023
Query = 1 - 102, Target = 14215 - 14125
Score = 0.90, E = 9.203, P = 0.9999, GC = 45
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
AA AA AA A :+ :UAUA+U: :+++ A A GG : :AGU
14215 AAGCGGAAUCAACGACGCCGUAAUAUAUUCAGAAAUAAACGG---CCAAGUCA------- 14166
<<<<_______>>>>>>>,,))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
C::CCGUAAA::GC+ CUA: +: ++ U+ AA+++ +
14165 -CUGCCGUAAACAGCAGCGCUAUCGCAACUACUGCAAAUACA 14125
Query = 1 - 102, Target = 13350 - 13253
Score = 0.79, E = 9.449, P = 0.9999, GC = 37
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
+AA UA AA A + :A +C:U: C::: AA :::G G C C:A
13350 UAAGGUACCGAACAGUCAAGUCAUU---UCCAUUUAAGUAAAGCAUGGCGGCACAUCUAC 13294
<<<<_______>>>>>>>,,))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
: :AC GUA AU: : U:A :A:G+ U: AU UU++ A+ +
13293 AUGACGGUAUAUCGUAUGA-AAUGGUUUUAUCUUUUGCAACA 13253
>gi|633168|emb|X83878.1|
Plus strand results:
Query = 1 - 102, Target = 168 - 267
Score = 79.36, E = 1.945e-07, P = 1.945e-07, GC = 46
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
+ A A++A AA A AA:AC+C:UAUAAU::CG:G AUAUGGC:CG::AGUUUCUACC:G
168 UUACAAUAUAAUAGGAACACUCAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGG 227
<<<<_______>>>>>>>,,))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102
CA CCGUAAA UG C:GACUA:G+GU:A A+U A+
228 GCA-CCGUAAA-UGUCCGACUAUGGGUGAGCAAUGGAACCGC 267
Minus strand results:
Query = 1 - 102, Target = 270 - 171
Score = 2.25, E = 6.802, P = 0.9989, GC = 48
:::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60
+ + A +:AC C:UA +::: :: UA GG :: :::GU AC: G
270 CGUGCGGUUCCAUUGCUCACCCAUA-GUCGGACAU-UUACGG-UGCCCGGUAGAAACUUG 214
<<<<_______>>>>>>>,,.))))))))::::::::::::::
61 gcaaCCGUAAAuugcCuGAC.UAcGaGuaAauauuaaauauuu 102
::::CC UA ::::C : UA:G GU: + U+++AUAUU
213 CGUGCCAUAUCCACGCGAUUaUAUGAGUGUUCCUAUUAUAUUG 171
//
Fin