LOCUS AAAA02000000 50231 rc DNA linear PLN 11-MAR-2005
DEFINITION Oryza sativa (indica cultivar-group) whole genome shotgun
sequencing project.
ACCESSION AAAA00000000
VERSION AAAA00000000.2 GI:54362548
KEYWORDS WGS.
SOURCE Oryza sativa (indica cultivar-group)
ORGANISM Oryza sativa (indica cultivar-group)
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
REFERENCE 1 (bases 1 to 50231)
AUTHORS Yu,J., Wang,J., Lin,W., Li,S., Li,H., Zhou,J., Ni,P., Dong,W.,
Hu,S., Zeng,C., Zhang,J., Zhang,Y., Li,R., Xu,Z., Li,S., Li,X.,
Zheng,H., Cong,L., Lin,L., Yin,J., Geng,J., Li,G., Shi,J., Liu,J.,
Lv,H., Li,J., Wang,J., Deng,Y., Ran,L., Shi,X., Wang,X., Wu,Q.,
Li,C., Ren,X., Wang,J., Wang,X., Li,D., Liu,D., Zhang,X., Ji,Z.,
Zhao,W., Sun,Y., Zhang,Z., Bao,J., Han,Y., Dong,L., Ji,J., Chen,P.,
Wu,S., Liu,J., Xiao,Y., Bu,D., Tan,J., Yang,L., Ye,C., Zhang,J.,
Xu,J., Zhou,Y., Yu,Y., Zhang,B., Zhuang,S., Wei,H., Liu,B., Lei,M.,
Yu,H., Li,Y., Xu,H., Wei,S., He,X., Fang,L., Zhang,Z., Zhang,Y.,
Huang,X., Su,Z., Tong,W., Li,J., Tong,Z., Li,S., Ye,J., Wang,L.,
Fang,L., Lei,T., Chen,C., Chen,H., Xu,Z., Li,H., Huang,H.,
Zhang,F., Xu,H., Li,N., Zhao,C., Li,S., Dong,L., Huang,Y., Li,L.,
Xi,Y., Qi,Q., Li,W., Zhang,B., Hu,W., Zhang,Y., Tian,X., Jiao,Y.,
Liang,X., Jin,J., Gao,L., Zheng,W., Hao,B., Liu,S., Wang,W.,
Yuan,L., Cao,M., McDermott,J., Samudrala,R., Wang,J., Wong,G.K. and
Yang,H.
TITLE The Genomes of Oryza sativa: A History of Duplications
JOURNAL PLoS Biol. 3 (2), E38 (2005)
PUBMED 15685292
REFERENCE 2 (bases 1 to 50231)
AUTHORS Yu,J., Hu,S., Wang,J., Li,S., Wong,K.-S.G., Liu,B., Deng,Y.,
Dai,L., Zhou,Y., Zhang,X., Cao,M., Liu,J., Sun,J., Tang,J.,
Chen,Y., Huang,X., Lin,W., Ye,C., Tong,W., Cong,L., Geng,J.,
Han,Y., Li,L., Li,W., Hu,G., Huang,X., Li,W., Li,J., Liu,Z., Li,L.,
Liu,J., Qi,Q., Liu,J., Li,L., Wang,X., Lu,H., Wu,T., Zhu,M., Ni,P.,
Han,H., Dong,W., Ren,X., Feng,X., Cui,P., Li,X., Wang,H., Xu,X.,
Zhai,W., Xu,Z., Zhang,J., He,S., Zhang,J., Xu,J., Zhang,K.,
Zheng,X., Dong,J., Zeng,W., Tao,L., Chen,X., He,J., Liu,D.,
Tian,W., Tian,C., Xia,H., Li,G., Gao,H., Li,P., Chen,W., Wang,X.,
Zhang,Y., Hu,J., Wang,J., Liu,S., Yang,J., Zhang,G., Bao,Q.,
Xiong,Y., Li,Z., Mao,L., Zhou,C., Chen,R., Zhu,Z., Hao,B.,
Zheng,W., Chen,S., Guo,W., Li,G., Liu,S., Huang,G., Tao,M.,
Wang,J., Zhu,L., Yuan,L. and Yang,H.
TITLE Direct Submission
JOURNAL Submitted (04-JAN-2002) Beijing Genomics Institute/Center of
Genomics & Bioinformatics, Institute of Genomics, Chinese Academy
of Sciences, Beijing Airport Industrial Zone B6, Beijing, Beijing
101300, P.R.China
REFERENCE 3 (bases 1 to 50231)
AUTHORS Yu,J., Wang,J., Lin,W., Li,S., Li,H., Zhou,J., Ni,P., Dong,W.,
Hu,S., Zeng,C., Zhang,J., Zhang,Y., Li,R., Xu,Z., Li,S., Li,X.,
Zheng,H., Cong,L., Lin,L., Yin,J., Geng,J., Li,G., Shi,J., Liu,J.,
Lv,H., Li,J., Wang,J., Deng,Y., Ran,L., Shi,X., Wang,X., Wu,Q.,
Li,C., Ren,X., Wang,J., Wang,X., Li,D., Liu,D., Zhang,X., Ji,Z.,
Zhao,W., Sun,Y., Zhang,Z., Bao,J., Han,Y., Dong,L., Ji,J., Chen,P.,
Wu,S., Liu,J., Xiao,Y., Bu,D., Tan,J., Yang,L., Ye,C., Zhang,J.,
Xu,J., Zhou,Y., Yu,Y., Zhang,B., Zhuang,S., Wei,H., Liu,B., Lei,M.,
Yu,H., Li,Y., Xu,H., Wei,S., He,X., Fang,L., Zhang,Z., Zhang,Y.,
Huang,X., Su,Z., Tong,W., Li,J., Tong,Z., Li,S., Ye,J., Wang,L.,
Fang,L., Lei,T., Chen,C., Chen,H., Xu,Z., Li,H., Huang,H.,
Zhang,F., Xu,H., Li,N., Zhao,C., Li,S., Dong,L., Huang,Y., Li,L.,
Xi,Y., Qi,Q., Li,W., Zhang,B., Hu,W., Zhang,Y., Zheng,W., Hao,B.,
Liu,S., Wang,W., Yuan,L., Cao,M.L., McDermott,J., Samudrala,R.,
Wang,J., Wong,G.K.-S. and Yang,H.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2003) Beijing Institute of Genomics, Chinese
Academy of Sciences, Beijing Airport Industrial Zone B6, Beijing,
Beijing 101300, P.R.China
COMMENT On Oct 21, 2004 this sequence version replaced gi:19924305.
The Oryza sativa (indica cultivar-group) whole genome shotgun (WGS)
project has the project accession AAAA00000000. This version of
the project (02) has the accession number AAAA02000000, and
consists of sequences AAAA02000001-AAAA02050231.
The improved whole-genome shotgun (WGS) sequences for the genomes
of indica and japonica rice, AAAA02000000 and AACV01000000,
respectively, have multi-megabase contiguity and are nearly
1000-fold improved over the drafts of 2002. Tested against a
non-redundant collection of 19,079 full-length cDNAs, 98.1% of the
genes are aligned without fragmentation to the mapped
super-scaffolds of one or the other genome. Despite having only a
small variation in gene content, there is an enormous variation in
intergenic regions. At least a quarter of the two sequences could
not be aligned, and in the aligned region
single-nucleotide-polymorphism (SNP) rates varied from as little as
3.0 SNP/kb in the coding regions, to 27.6 SNP/kb in the
transposable elements.
FEATURES Location/Qualifiers
source 1..50231
/organism="Oryza sativa (indica cultivar-group)"
/mol_type="genomic DNA"
/cultivar="93-11"
/db_xref="taxon:39946"
WGS AAAA02000001-AAAA02050231
WGS_SCAFLD CM000126-CM000137
WGS_SCAFLD CH398081-CH401163
//