MEGABLAST 1.4.13-Paracel [2002-12-12]


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), 
"A greedy algorithm for aligning DNA sequences", 
J Comput Biol 2000; 7(1-2):203-14.

Database: bwb/tmp/vISbyVPvvB 
           2 sequences; 80 total letters

Searching. done
Query= DNA sequence #1
         (40 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

reverse-complement of sequence #1                                      74   1e-19
DNA sequence #1                                                        74   1e-19

>reverse-complement of sequence #1
          Length = 40

 Score = 73.8 bits (37), Expect = 1e-19
 Identities = 37/37 (100%)
 Strand = Plus / Minus

                                               
Query: 2  ccccccccccccccccccccccccccccccccccccc 38
          |||||||||||||||||||||||||||||||||||||
Sbjct: 40 ccccccccccccccccccccccccccccccccccccc 4



 Score = 67.9 bits (34), Expect = 8e-18
 Identities = 34/34 (100%)
 Strand = Plus / Minus

                                            
Query: 1  cccccccccccccccccccccccccccccccccc 34
          ||||||||||||||||||||||||||||||||||
Sbjct: 36 cccccccccccccccccccccccccccccccccc 3


>DNA sequence #1
          Length = 40

 Score = 73.8 bits (37), Expect = 1e-19
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                               
Query: 2  ccccccccccccccccccccccccccccccccccccc 38
          |||||||||||||||||||||||||||||||||||||
Sbjct: 1  ccccccccccccccccccccccccccccccccccccc 37



 Score = 71.9 bits (36), Expect = 5e-19
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                              
Query: 1  cccccccccccccccccccccccccccccccccccc 36
          ||||||||||||||||||||||||||||||||||||
Sbjct: 3  cccccccccccccccccccccccccccccccccccc 38


Searching. done
Query= reverse-complement of sequence #1
         (40 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

reverse-complement of sequence #1                                      74   1e-19
DNA sequence #1                                                        74   1e-19

>reverse-complement of sequence #1
          Length = 40

 Score = 73.8 bits (37), Expect = 1e-19
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                               
Query: 3  ggggggggggggggggggggggggggggggggggggg 39
          |||||||||||||||||||||||||||||||||||||
Sbjct: 4  ggggggggggggggggggggggggggggggggggggg 40



 Score = 67.9 bits (34), Expect = 8e-18
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 7  gggggggggggggggggggggggggggggggggg 40
          ||||||||||||||||||||||||||||||||||
Sbjct: 3  gggggggggggggggggggggggggggggggggg 36


>DNA sequence #1
          Length = 40

 Score = 73.8 bits (37), Expect = 1e-19
 Identities = 37/37 (100%)
 Strand = Plus / Minus

                                               
Query: 3  ggggggggggggggggggggggggggggggggggggg 39
          |||||||||||||||||||||||||||||||||||||
Sbjct: 37 ggggggggggggggggggggggggggggggggggggg 1



 Score = 71.9 bits (36), Expect = 5e-19
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                              
Query: 5  gggggggggggggggggggggggggggggggggggg 40
          ||||||||||||||||||||||||||||||||||||
Sbjct: 38 gggggggggggggggggggggggggggggggggggg 3


  Database: bwb/tmp/vISbyVPvvB
    Posted date:  Jan 23, 2003  9:25 AM
  Number of letters in database: 80
  Number of sequences in database:  2
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 0, Extension: 0
Number of Hits to DB: 0
Number of Sequences: 2
length of database: 80
effective search space used:        0
S2: 4 ( 8.4 bits)