BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1141079027-8324-8848328247.BLASTQ4


Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
           3,742,891 sequences; 16,670,205,594 total letters
Query=  pyrR, 558 bases, FB21E40C checksum.
Length=558


                                                                   Score     E
Sequences producing significant alignments:                        (Bits)  Value

gi|41400296|gb|AE016958.1|  Mycobacterium avium subsp. paratub...   236    6e-59
gi|54013472|dbj|AP006618.1|  Nocardia farcinica IFM 10152 DNA, co   127    4e-26
gi|57546753|dbj|BA000030.2|  Streptomyces avermitilis MA-4680 gen   119    1e-23

ALIGNMENTS
>gi|41400296|gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete 
genome
Length=4829781

 Features in this part of subject sequence:
   PyrR

 Score =  236 bits (119),  Expect = 6e-59
 Identities = 248/291 (85%), Gaps = 0/291 (0%)
 Strand=Plus/Plus

Query  262      CCGCCGCGTCCGCTGGAGGCCACCTCCATTCCCGCGGGCGGTGTCGACGACGCGATCGTC  321
                |||||||| ||||||||||||||||| || || || |||||  ||||||||||| | || 
Sbjct  1166897  CCGCCGCGGCCGCTGGAGGCCACCTCGATCCCGGCCGGCGGCATCGACGACGCGCTGGTG  1166956

Query  322      ATCCTCGTCGACGACGTCCTGTACTCGGGCCGCTCGGTCCGCTCGGCGCTGGACGCGCTG  381
                ||||| ||||||||||| || ||||| ||||||||||| |||||||| ||||||||||||
Sbjct  1166957  ATCCTGGTCGACGACGTGCTCTACTCCGGCCGCTCGGTGCGCTCGGCACTGGACGCGCTG  1167016

Query  382      CGCGACATCGGTCGCCCCCGCATCGTGCAGCTGGCGGTGCTGGTCGACCGCGGGCACCGC  441
                |||||| | || ||||| ||  | ||||| ||||||||||||||||||||||| ||||||
Sbjct  1167017  CGCGACGTGGGCCGCCCGCGGGTGGTGCAACTGGCGGTGCTGGTCGACCGCGGTCACCGC  1167076

Query  442      GAGCTGCCCATCCGGGCCGACTACGTGGGCAAGAACGTCCCGACCTCACGCAGCGAAAGC  501
                ||||||||  | || ||||||||||| |||||||||||||| ||||| ||||| || |||
Sbjct  1167077  GAGCTGCCGCTGCGCGCCGACTACGTCGGCAAGAACGTCCCCACCTCGCGCAGTGAGAGC  1167136

Query  502      GTCCACGTGCTGCTCAGCGAACACGACGACCGCGACGGAGTGGTGATCTCG  552
                || |||||||||||   ||| ||||||| |  |||||| ||||||||||||
Sbjct  1167137  GTGCACGTGCTGCTGGCCGAGCACGACGGCGCCGACGGGGTGGTGATCTCG  1167187


>gi|54013472|dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
Length=6021225

 Features in this part of subject sequence:
   putative pyrimidine operon regulator

 Score =  127 bits (64),  Expect = 4e-26
 Identities = 85/92 (92%), Gaps = 0/92 (0%)
 Strand=Plus/Minus

Query  406      GTGCAGCTGGCGGTGCTGGTCGACCGCGGGCACCGCGAGCTGCCCATCCGGGCCGACTAC  465
                ||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct  3837536  GTGCAGCTGGCCGTGCTGGTCGACCGCGGCCACCGCGAGCTGCCGATCCGCGCCGACTAC  3837477

Query  466      GTGGGCAAGAACGTCCCGACCTCACGCAGCGA  497
                |||||||||||||| || ||||| ||||||||
Sbjct  3837476  GTGGGCAAGAACGTGCCCACCTCCCGCAGCGA  3837445


>gi|57546753|dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
Length=9025608

 Features in this part of subject sequence:
   putative pyrimidine operon regulatory protein

 Score =  119 bits (60),  Expect = 1e-23
 Identities = 135/160 (84%), Gaps = 0/160 (0%)
 Strand=Plus/Plus

Query  323      TCCTCGTCGACGACGTCCTGTACTCGGGCCGCTCGGTCCGCTCGGCGCTGGACGCGCTGC  382
                ||||||||||||||||||| | ||| |||||| |  ||||| | || || ||||||||| 
Sbjct  8189890  TCCTCGTCGACGACGTCCTCTTCTCCGGCCGCACCATCCGCGCCGCCCTCGACGCGCTGA  8189949

Query  383      GCGACATCGGTCGCCCCCGCATCGTGCAGCTGGCGGTGCTGGTCGACCGCGGGCACCGCG  442
                 ||||||||| ||||| |||  ||| ||||| ||||| || ||||||||||| |||||||
Sbjct  8189950  ACGACATCGGCCGCCCGCGCGCCGTACAGCTCGCGGTCCTCGTCGACCGCGGTCACCGCG  8190009

Query  443      AGCTGCCCATCCGGGCCGACTACGTGGGCAAGAACGTCCC  482
                | ||||||||||| ||||||||||| ||||||||| ||||
Sbjct  8190010  AACTGCCCATCCGCGCCGACTACGTCGGCAAGAACCTCCC  8190049



  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental 
samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Feb 23, 2006  9:00 AM
  Number of letters in database: -509,663,586
  Number of sequences in database:  3,742,891
Lambda     K      H
    1.37    0.711     1.31 
Gapped
Lambda     K      H
    1.37    0.711     1.31 
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 3742891
Number of Hits to DB: 2465616
Number of extensions: 117843
Number of successful extensions: 1771
Number of sequences better than 1e-23: 0
Number of HSP's better than 1e-23 without gapping: 0
Number of HSP's gapped: 1771
Number of HSP's successfully gapped: 0
Length of query: 558
Length of database: 16670205594
Length adjustment: 22
Effective length of query: 536
Effective length of database: 16670205594
Effective search space: 8935230198384
Effective search space used: 8891094027712
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
S2: 60 (119.4 bits)