BLASTX 2.0.13 [May-26-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 18.ctg12393
(6959 letters)
Database: h_nrNov10_2000
57,234 sequences; 18,303,128 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|728837|sp|P39194|ALU7_HUMAN ALU SUBFAMILY SQ SEQUENCE CONTAM... 161 8e-39
gi|728836|sp|P39193|ALU6_HUMAN ALU SUBFAMILY SP SEQUENCE CONTAM... 156 3e-37
>gi|728837|sp|P39194|ALU7_HUMAN ALU SUBFAMILY SQ SEQUENCE
CONTAMINATION WARNING ENTRY
Length = 593
Score = 161 bits (404), Expect = 8e-39
Identities = 73/97 (75%), Positives = 76/97 (78%)
Frame = -1
Query: 2996 FFLRQSFTLVTQAGVQWHDLSSLQPLPPRFKGFSSLSLPISWDYRRLPPCLANFCIFHKD 2817
FFLR+SF LV QAGVQW DL SLQP PP FK FS LSLP SWDYRR PP ANFCIF +D
Sbjct: 299 FFLRRSFALVAQAGVQWRDLGSLQPPPPGFKRFSCLSLPSSWDYRRPPPRPANFCIFSRD 358
Query: 2816 GVLPCWPGWS*TPDLR*YAHFGIPKCWDYRREPPCPA 2706
GV PCWPGWS TPDLR G+PKCWDYRREPP PA
Sbjct: 359 GVSPCWPGWSRTPDLRXSTRLGLPKCWDYRREPPRPA 395
Score = 156 bits (391), Expect = 3e-37
Identities = 76/97 (78%), Positives = 83/97 (85%)
Frame = +3
Query: 2706 GRARWLTPVIPALWDAKVGISSEVRSSRPAWPTWQNSVFMKNTKISQAWWQAPVIPANWE 2885
GRARWLTPVIPALW+A+ G S EVRSSRPAWPTW N V KNTKIS+AWW+APVIPA E
Sbjct: 1 GRARWLTPVIPALWEAEAGGSPEVRSSRPAWPTWXNPVSTKNTKISRAWWRAPVIPATRE 60
Query: 2886 AEAGESLESRRQRLQ*AEIVPLHSSLGDKSKTLSQKK 2996
AEAGESLE R+RLQ AEI PLHSSLG+KS+T SQKK
Sbjct: 61 AEAGESLEPGRRRLQXAEIAPLHSSLGNKSETPSQKK 97
Score = 140 bits (349), Expect = 2e-32
Identities = 74/101 (73%), Positives = 79/101 (77%)
Frame = -2
Query: 2995 FF*DRVLLLSPRLECNGTISAHCNLCLLDSRDSPASASQLAGITGACHHAWLIFVFFIKT 2816
FF D V LL PRLEC+G ISAHCNL L S DSPASAS++AGITGA HHA LIFVF ++T
Sbjct: 399 FFXDGVSLLLPRLECSGAISAHCNLRLPGSSDSPASASRVAGITGARHHARLIFVFLVET 458
Query: 2815 EFCHVGQAGLELLTSDDMPTLASQSAGITGVSHRARPGIMF 2693
F HVGQAGLELLTS D P ASQSAGITGVSHRAR F
Sbjct: 459 GFHHVGQAGLELLTSGDPPASASQSAGITGVSHRARXXXFF 499
Score = 134 bits (334), Expect = 1e-30
Identities = 67/89 (75%), Positives = 71/89 (79%)
Frame = +1
Query: 2707 AGHGGSRL*SQHFGMPKWAYHLRSGVQDQPGQHGKTPSL*KIQKLARHGGRRL*SQLIGR 2886
AG GGSRL SQHFG P+ HLRSGV+DQPGQHG+TPSL KIQKLA GG RL SQL+GR
Sbjct: 101 AGRGGSRLXSQHFGRPRRVDHLRSGVRDQPGQHGETPSLLKIQKLAGRGGGRLXSQLLGR 160
Query: 2887 LRLENPLNLGGRGCSELRSCHCTPAWVTR 2973
LR EN LN GG GCSE RS HCTPAW TR
Sbjct: 161 LRQENRLNPGGGGCSEPRSRHCTPAWATR 189
Score = 129 bits (321), Expect = 4e-29
Identities = 72/101 (71%), Positives = 75/101 (73%)
Frame = +2
Query: 2693 KHYTWPGTVAHACNPSTLGCQSGHII*GQEFKTSLANMAKLRLYEKYKN*PGMVAGACNP 2872
K PG VAHACNPSTLG + G I GQEF+TSLANM K RLY KYKN PG+VAGACNP
Sbjct: 195 KKXXXPGAVAHACNPSTLGGRGGWITXGQEFETSLANMVKPRLYXKYKNXPGVVAGACNP 254
Query: 2873 S*LGG*GWRIP*I*EAEVAVS*DRAIALQPG*QE*NSVSKK 2995
S GG G RI EAEVAVS DRA ALQPG QE NSVSKK
Sbjct: 255 SYSGGXGRRIAXTREAEVAVSRDRATALQPGQQERNSVSKK 295
Score = 119 bits (295), Expect = 5e-26
Identities = 74/101 (73%), Positives = 79/101 (77%), Gaps = 54/101 (53%)
Frame = +1
Query: 5179 FFLRWSFALSPRLECSGAISAHCNLRLPGSSNSPASASRVAGTTGVRHHTRLIFVFFVKT 5358
FF L PRLECSGAISAHCNLRLPGSS+SPASASRVAG TG RHH RLIFVF V+T
Sbjct: 399 FFXDGVSLLLPRLECSGAISAHCNLRLPGSSDSPASASRVAGITGARHHARLIFVFLVET 458
Query: 5359 GFHHVGQ------------------AGLN------------------------------- 5391
GFHHVGQ AG+
Sbjct: 459 GFHHVGQAGLELLTSGDPPASASQSAGITGVSHRARXXXFFETEFRSCCPGWSAVARSRL 518
Query: 5392 -----SRPQVIHLSQPPKVLGLQV*ATVPGYFMDF 5481
SR Q I L QPP+ LGLQ AT PG F+ F
Sbjct: 519 TATSASRVQAILLPQPPEXLGLQAPATTPGXFLYF 553
Score = 113 bits (281), Expect = 2e-24
Identities = 65/94 (69%), Positives = 73/94 (77%), Gaps = 55/94 (58%)
Frame = +3
Query: 5205 VTQAGMQWCNLSSLQPPPPRFKQFSCLSLPSSWDYRCAPPHQANFCIFCKDRFSPRWPGW 5384
V QAG+QW +L SLQPPPP FK+FSCLSLPSSWDYR PP ANFCIF +D SP WPGW
Sbjct: 308 VAQAGVQWRDLGSLQPPPPGFKRFSCLSLPSSWDYRRPPPRPANFCIFSRDGVSPCWPGW 367
Query: 5385 S-----------------------------------------ELQTSG------------ 5405
S L+ SG
Sbjct: 368 SRTPDLRXSTRLGLPKCWDYRREPPRPAXXXFFXDGVSLLLPRLECSGAISAHCNLRLPG 427
Query: 5406 --DSPVSASQSAGITGVSHRARLLHGFLI 5486
DSP SAS+ AGITG H ARL+ FL+
Sbjct: 428 SSDSPASASRVAGITGARHHARLIFVFLV 456
Score = 111 bits (276), Expect(2) = 1e-32
Identities = 51/63 (80%), Positives = 55/63 (86%)
Frame = -1
Query: 5387 RPAWPTW*KPVFTKNTKISLVWWRTPVVPATREAEAGELLEPGRRRLQ*AEIAPLHSSLG 5208
RPAWPTW PV TKNTKIS WWR PV+PATREAEAGE LEPGRRRLQ AEIAPLHSSLG
Sbjct: 28 RPAWPTWXNPVSTKNTKISRAWWRAPVIPATREAEAGESLEPGRRRLQXAEIAPLHSSLG 87
Query: 5207 DRA 5199
+++
Sbjct: 88 NKS 90
Score = 89.7 bits (219), Expect(2) = 6e-24
Identities = 45/61 (73%), Positives = 45/61 (73%)
Frame = -2
Query: 5386 DQPGQRGENLSLQKIQKLAWCGGAHL*SQLLGRLRQENCLNLGGGGCSELRLHHCIPAWV 5207
DQPGQ GE SL KIQKLA GG L SQLLGRLRQEN LN GGGGCSE R HC PAW
Sbjct: 128 DQPGQHGETPSLLKIQKLAGRGGGRLXSQLLGRLRQENRLNPGGGGCSEPRSRHCTPAWA 187
Query: 5206 T 5204
T
Sbjct: 188 T 188
Score = 87.8 bits (214), Expect = 1e-16
Identities = 53/89 (59%), Positives = 56/89 (62%)
Frame = -3
Query: 2973 SCHPGWSAMARSQLTATSASXXXXXXXXXXXXXXXXXXXATMPG*FLYFS*RRSFAMLAR 2794
SC PGWSA+ARS+LTATSAS AT PG FLYF RR F MLAR
Sbjct: 505 SCCPGWSAVARSRLTATSASRVQAILLPQPPEXLGLQAPATTPGXFLYFXXRRGFTMLAR 564
Query: 2793 LVLNS*PQMICPLWHPKVLGLQA*ATVPG 2707
LV NS PQ+I P PKVLGLQA AT PG
Sbjct: 565 LVSNSXPQVIHPPRPPKVLGLQAXATAPG 593
Score = 83.1 bits (202), Expect = 4e-15
Identities = 45/62 (72%), Positives = 48/62 (76%)
Frame = -3
Query: 5388 QTSLANVVKTCLYKKYKN*PGVVAHTCSPSYSGG*GRRIA*TWEAEVAVS*DCTTAFQPG 5209
+TSLAN+VK LY KYKN PGVVA C+PSYSGG GRRIA T EAEVAVS D TA QPG
Sbjct: 226 ETSLANMVKPRLYXKYKNXPGVVAGACNPSYSGGXGRRIAXTREAEVAVSRDRATALQPG 285
Query: 5208 *Q 5203
Q
Sbjct: 286 QQ 287
Score = 62.8 bits (150), Expect = 5e-09
Identities = 36/61 (59%), Positives = 41/61 (67%)
Frame = +2
Query: 5204 CHPGWNAVVQSQLTATSASQVQAIXXXXXXXXXXXXVCATTPG*FLYFL*RQVFTTLARL 5383
C PGW+AV +S+LTATSAS+VQAI ATTPG FLYF R+ FT LARL
Sbjct: 506 CCPGWSAVARSRLTATSASRVQAILLPQPPEXLGLQAPATTPGXFLYFXXRRGFTMLARL 565
Query: 5384 V 5386
V
Sbjct: 566 V 566
Score = 50.4 bits (118), Expect(2) = 1e-32
Identities = 23/26 (88%), Positives = 23/26 (88%)
Frame = -2
Query: 5464 RARWLTPVIPALWEAETGESPEVWSS 5387
RARWLTPVIPALWEAE G SPEV SS
Sbjct: 2 RARWLTPVIPALWEAEAGGSPEVRSS 27
Score = 47.6 bits (111), Expect = 2e-04
Identities = 23/38 (60%), Positives = 24/38 (62%)
Frame = +2
Query: 5390 TPDLR*FTCLSLPKCWDYRCEPPCPATSWIFDYRLCLL 5503
TPDLR T L LPKCWDYR EPP PA F + LL
Sbjct: 370 TPDLRXSTRLGLPKCWDYRREPPRPAXXXFFXDGVSLL 407
Score = 43.4 bits (100), Expect(2) = 6e-24
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = -3
Query: 5466 AGHGGSHL*SQHFGRLRQVNHLRSGVQ 5386
AG GGS L SQHFGR R+V+HLRSGV+
Sbjct: 101 AGRGGSRLXSQHFGRPRRVDHLRSGVR 127
>gi|728836|sp|P39193|ALU6_HUMAN ALU SUBFAMILY SP SEQUENCE
CONTAMINATION WARNING ENTRY
Length = 593
Score = 156 bits (390), Expect = 3e-37
Identities = 71/97 (73%), Positives = 74/97 (76%)
Frame = -1
Query: 2996 FFLRQSFTLVTQAGVQWHDLSSLQPLPPRFKGFSSLSLPISWDYRRLPPCLANFCIFHKD 2817
FFLR+SF LV QAGVQW DL S QP PP FK FS LSLP SWDYR PP ANFCIF +D
Sbjct: 299 FFLRRSFALVAQAGVQWRDLGSPQPPPPGFKRFSCLSLPSSWDYRHAPPRPANFCIFSRD 358
Query: 2816 GVLPCWPGWS*TPDLR*YAHFGIPKCWDYRREPPCPA 2706
GV PCW GWS TPDLR A G+PKCWDYRREPP PA
Sbjct: 359 GVSPCWSGWSRTPDLRXSARLGLPKCWDYRREPPRPA 395
Score = 146 bits (364), Expect = 4e-34
Identities = 72/97 (74%), Positives = 81/97 (83%)
Frame = +3
Query: 2706 GRARWLTPVIPALWDAKVGISSEVRSSRPAWPTWQNSVFMKNTKISQAWWQAPVIPANWE 2885
GRARWLTPVIPALW+A+ G S EV SSRPA PTW+N V KNTKIS+AWW+ PVIPA E
Sbjct: 1 GRARWLTPVIPALWEAEAGGSPEVGSSRPAXPTWRNPVSTKNTKISRAWWRMPVIPATRE 60
Query: 2886 AEAGESLESRRQRLQ*AEIVPLHSSLGDKSKTLSQKK 2996
AEAGESLE R+RL+ AEI PLHSSLG+KS+T SQKK
Sbjct: 61 AEAGESLEPGRRRLRXAEIAPLHSSLGNKSETPSQKK 97
Score = 133 bits (332), Expect = 2e-30
Identities = 72/101 (71%), Positives = 76/101 (74%)
Frame = -2
Query: 2995 FF*DRVLLLSPRLECNGTISAHCNLCLLDSRDSPASASQLAGITGACHHAWLIFVFFIKT 2816
FF D V LL PRLECNG ISAH NL L S DSPASAS++AGITG HHA LIFVF ++T
Sbjct: 399 FFXDGVSLLLPRLECNGAISAHRNLRLPGSSDSPASASRVAGITGMRHHARLIFVFLVET 458
Query: 2815 EFCHVGQAGLELLTSDDMPTLASQSAGITGVSHRARPGIMF 2693
F HVGQAGLEL TS D P ASQSAGITGVSHRAR F
Sbjct: 459 GFLHVGQAGLELPTSGDPPASASQSAGITGVSHRARXXXFF 499
Score = 129 bits (320), Expect = 5e-29
Identities = 65/89 (73%), Positives = 69/89 (77%)
Frame = +1
Query: 2707 AGHGGSRL*SQHFGMPKWAYHLRSGVQDQPGQHGKTPSL*KIQKLARHGGRRL*SQLIGR 2886
AG GGSRL SQHFG P+ A HLRSGV+DQP QHG+TPSL KIQKLA GG L SQL+GR
Sbjct: 101 AGRGGSRLXSQHFGRPRRADHLRSGVRDQPDQHGETPSLLKIQKLAGRGGACLXSQLLGR 160
Query: 2887 LRLENPLNLGGRGCSELRSCHCTPAWVTR 2973
LR EN LN GG GC E RS HCTPAW TR
Sbjct: 161 LRQENRLNPGGGGCGEPRSRHCTPAWATR 189
Score = 125 bits (311), Expect = 6e-28
Identities = 70/101 (69%), Positives = 74/101 (72%)
Frame = +2
Query: 2693 KHYTWPGTVAHACNPSTLGCQSGHII*GQEFKTSLANMAKLRLYEKYKN*PGMVAGACNP 2872
K PG VAHACNPSTLG + G I G+EF+TSL NM K RLY KYKN PG+VA ACNP
Sbjct: 195 KKXXXPGAVAHACNPSTLGGRGGRITXGREFETSLTNMEKPRLYXKYKNXPGVVAHACNP 254
Query: 2873 S*LGG*GWRIP*I*EAEVAVS*DRAIALQPG*QE*NSVSKK 2995
S GG G RI EAEVAVS DRAIALQPG QE NSVSKK
Sbjct: 255 SYSGGXGRRIAXTREAEVAVSRDRAIALQPGQQERNSVSKK 295
Score = 109 bits (270), Expect = 4e-23
Identities = 71/101 (70%), Positives = 78/101 (76%), Gaps = 54/101 (53%)
Frame = +1
Query: 5179 FFLRWSFALSPRLECSGAISAHCNLRLPGSSNSPASASRVAGTTGVRHHTRLIFVFFVKT 5358
FF L PRLEC+GAISAH NLRLPGSS+SPASASRVAG TG+RHH RLIFVF V+T
Sbjct: 399 FFXDGVSLLLPRLECNGAISAHRNLRLPGSSDSPASASRVAGITGMRHHARLIFVFLVET 458
Query: 5359 GFHHVGQ------------------AGLN------------------------------- 5391
GF HVGQ AG+
Sbjct: 459 GFLHVGQAGLELPTSGDPPASASQSAGITGVSHRARXXXFFETEFRSCCPGWSAMARSRL 518
Query: 5392 -----SRPQVIHLSQPPKVLGLQV*ATVPGYFMDF 5481
SR Q I L QPP+ LGLQ AT PG F+ F
Sbjct: 519 TATSASRVQAILLPQPPEXLGLQACATTPGXFLYF 553
Score = 105 bits (260), Expect = 6e-22
Identities = 62/94 (65%), Positives = 71/94 (74%), Gaps = 55/94 (58%)
Frame = +3
Query: 5205 VTQAGMQWCNLSSLQPPPPRFKQFSCLSLPSSWDYRCAPPHQANFCIFCKDRFSPRWPGW 5384
V QAG+QW +L S QPPPP FK+FSCLSLPSSWDYR APP ANFCIF +D SP W GW
Sbjct: 308 VAQAGVQWRDLGSPQPPPPGFKRFSCLSLPSSWDYRHAPPRPANFCIFSRDGVSPCWSGW 367
Query: 5385 S-----------------------------------------------------ELQTSG 5405
S L+ G
Sbjct: 368 SRTPDLRXSARLGLPKCWDYRREPPRPAXXXFFXDGVSLLLPRLECNGAISAHRNLRLPG 427
Query: 5406 DS--PVSASQSAGITGVSHRARLLHGFLI 5486
S P SAS+ AGITG+ H ARL+ FL+
Sbjct: 428 SSDSPASASRVAGITGMRHHARLIFVFLV 456
Score = 104 bits (258), Expect(2) = 1e-30
Identities = 49/63 (77%), Positives = 54/63 (84%)
Frame = -1
Query: 5387 RPAWPTW*KPVFTKNTKISLVWWRTPVVPATREAEAGELLEPGRRRLQ*AEIAPLHSSLG 5208
RPA PTW PV TKNTKIS WWR PV+PATREAEAGE LEPGRRRL+ AEIAPLHSSLG
Sbjct: 28 RPAXPTWRNPVSTKNTKISRAWWRMPVIPATREAEAGESLEPGRRRLRXAEIAPLHSSLG 87
Query: 5207 DRA 5199
+++
Sbjct: 88 NKS 90
Score = 88.2 bits (215), Expect = 1e-16
Identities = 53/89 (59%), Positives = 56/89 (62%)
Frame = -3
Query: 2973 SCHPGWSAMARSQLTATSASXXXXXXXXXXXXXXXXXXXATMPG*FLYFS*RRSFAMLAR 2794
SC PGWSAMARS+LTATSAS AT PG FLYF RR F+ML R
Sbjct: 505 SCCPGWSAMARSRLTATSASRVQAILLPQPPEXLGLQACATTPGXFLYFXXRRGFSMLVR 564
Query: 2793 LVLNS*PQMICPLWHPKVLGLQA*ATVPG 2707
LV NS PQ+I P PKVLGLQA AT PG
Sbjct: 565 LVSNSRPQVIRPPRPPKVLGLQAXATAPG 593
Score = 85.8 bits (209), Expect(2) = 2e-22
Identities = 44/61 (72%), Positives = 44/61 (72%)
Frame = -2
Query: 5386 DQPGQRGENLSLQKIQKLAWCGGAHL*SQLLGRLRQENCLNLGGGGCSELRLHHCIPAWV 5207
DQP Q GE SL KIQKLA GGA L SQLLGRLRQEN LN GGGGC E R HC PAW
Sbjct: 128 DQPDQHGETPSLLKIQKLAGRGGACLXSQLLGRLRQENRLNPGGGGCGEPRSRHCTPAWA 187
Query: 5206 T 5204
T
Sbjct: 188 T 188
Score = 80.8 bits (196), Expect = 2e-14
Identities = 43/62 (69%), Positives = 46/62 (73%)
Frame = -3
Query: 5388 QTSLANVVKTCLYKKYKN*PGVVAHTCSPSYSGG*GRRIA*TWEAEVAVS*DCTTAFQPG 5209
+TSL N+ K LY KYKN PGVVAH C+PSYSGG GRRIA T EAEVAVS D A QPG
Sbjct: 226 ETSLTNMEKPRLYXKYKNXPGVVAHACNPSYSGGXGRRIAXTREAEVAVSRDRAIALQPG 285
Query: 5208 *Q 5203
Q
Sbjct: 286 QQ 287
Score = 63.2 bits (151), Expect = 4e-09
Identities = 34/61 (55%), Positives = 41/61 (66%)
Frame = +2
Query: 5204 CHPGWNAVVQSQLTATSASQVQAIXXXXXXXXXXXXVCATTPG*FLYFL*RQVFTTLARL 5383
C PGW+A+ +S+LTATSAS+VQAI CATTPG FLYF R+ F+ L RL
Sbjct: 506 CCPGWSAMARSRLTATSASRVQAILLPQPPEXLGLQACATTPGXFLYFXXRRGFSMLVRL 565
Query: 5384 V 5386
V
Sbjct: 566 V 566
Score = 50.8 bits (119), Expect(2) = 1e-30
Identities = 23/26 (88%), Positives = 23/26 (88%)
Frame = -2
Query: 5464 RARWLTPVIPALWEAETGESPEVWSS 5387
RARWLTPVIPALWEAE G SPEV SS
Sbjct: 2 RARWLTPVIPALWEAEAGGSPEVGSS 27
Score = 45.7 bits (106), Expect = 7e-04
Identities = 22/38 (57%), Positives = 23/38 (59%)
Frame = +2
Query: 5390 TPDLR*FTCLSLPKCWDYRCEPPCPATSWIFDYRLCLL 5503
TPDLR L LPKCWDYR EPP PA F + LL
Sbjct: 370 TPDLRXSARLGLPKCWDYRREPPRPAXXXFFXDGVSLL 407
Score = 41.8 bits (96), Expect(2) = 2e-22
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = -3
Query: 5466 AGHGGSHL*SQHFGRLRQVNHLRSGVQ 5386
AG GGS L SQHFGR R+ +HLRSGV+
Sbjct: 101 AGRGGSRLXSQHFGRPRRADHLRSGVR 127
Database: h_nrNov10_2000
Posted date: Nov 10, 2000 9:40 AM
Number of letters in database: 18,303,128
Number of sequences in database: 57,234
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 262249022
Number of Sequences: 57234
Number of extensions: 6465920
Number of successful extensions: 16162
Number of sequences better than 1.0e-03: 302
Number of HSP's better than 0.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 14866
Number of HSP's gapped (non-prelim): 1104
length of query: 2319
length of database: 18,303,128
effective HSP length: 55
effective length of query: 2264
effective length of database: 15,155,258
effective search space: 34311504112
effective search space used: 34311504112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 105 (45.3 bits)