CPU time (band calc): 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00
sequence: gi|2239287|gb|U51115.1|BSU51115
hit 0   :  15589  15691    78.40 bits
hit 1   :  15589  15691    78.40 bits
           :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
         1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60      
            A+ A+A+ AAAA A   :CUC:UAUAAU: :GGGAAUAUGGCCC: :AGUUUCUACC:G
     15589 CAUGAAAUCAAAACACGACCUCAUAUAAUCUUGGGAAUAUGGCCCAUAAGUUUCUACCCG 15648   

           <<<<_______>>>>>>>,,)))).))))::::::::::::::
        61 gcaaCCGUAAAuugcCuGACUAcG.aGuaAauauuaaauauuu 102     
           GCAACCGUAAAUUGCC:GACUA:G AG: AA + ++  +++++
     15649 GCAACCGUAAAUUGCCGGACUAUGcAGGGAAGUGAUCGAUAAA 15691   

hit 2   :  13198  13294     5.41 bits
hit 3   :  13198  13294     5.41 bits
           :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
         1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60      
           +A+ +U + AAAA AA : :U:::A AA:C::::G A  UGGC::::G: UUU U  :: 
     13198 UAUCUUCUUAAAAUAAGGAAUGAAAAAACCAGCUGCAC-UGGCAGCUGGUUUUUUUUGU- 13255   

           <<<<_______>>>>>>>,,))))))))::::::::::::::
        61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102     
              : C  AA :U+++::  U:::A: : AUAU+   U +U 
     13256 ---UGCAAAAGAUAAAACCAUUUCAUACGAUAUACCGUCAUG 13294   

hit 4   :  11655  11756    81.29 bits
hit 5   :  11655  11756    81.29 bits
           :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
         1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60      
           A AAAU AAA+AA A+   : CGUAUAAU::CG:GAAUAUGGC:CG::AGU UCUACCA:
     11655 AGAAAUCAAAUAAGAUGAAUUCGUAUAAUCGCGGGAAUAUGGCUCGCAAGUCUCUACCAA 11714   

           <<<<_______>>>>>>>,,))))))))::::::::::::::
        61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102     
           GC ACCGUAAAU GC:UGACUACG :   AU+U +++  UUU
     11715 GCUACCGUAAAUGGCUUGACUACGUAAACAUUUCUUUCGUUU 11756   

hit 0   :    825    748     2.84 bits
hit 1   :    825    748     2.84 bits
           :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
         1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60      
           +AAAA+ AA AAAA  A: ::C:U:U A           UG  C+ A A   UCUAC   
     15073 UAAAAACAACAAAAGGAGCUGCUUUUUA-----------UGCUCACACACGAUCUAC--- 15118   

           <<<<_______>>>>>>>,,))))))))::::::::::::::
        61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102     
                 G AAA      +AC:A:G:: :A ++UU  AU+U+U
     15119 ----AUGAAAA------AACAAAGCAUUACAUUUCCAUUUAU 15150   

hit 2   :   4125   4023     1.38 bits
hit 3   :   4125   4023     1.38 bits
           :::::::::::::::::((((((((,,,<<<<<<<_______.>>>.>>>>,,,,,,,,<
         1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGG.ccc.gagaGUuUCUACC 58      
            AAA +AAA A  A AA: :U:::AUAA :+:G:: AU U   ::C :+:  UUUC AC 
     11773 CAAACAAAACACUACAAAUUUGAAAUAAGCUGGUAUAUUUUCuUACaCGAAUUUUCGAC- 11831   

           <<<<<<_______>>>...>>>>,,))))))))::::::::::::::
        59 aGgcaaCCGUAAAuug...cCuGACUAcGaGuaAauauuaaauauuu 102     
              :AAC GUA AUU:   + +GA U:::A: :A+ AU+A+AU+ + 
     11832 ---AAACUGUAUAUUUaugAUAGAGUUUCAAUUAUCAUAAUAUUCAG 11875   

hit 4   :   8105   8018     1.70 bits
hit 5   :   8105   8018     1.70 bits
           :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
         1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60      
            A+A   A +A    AA   U:::AU A         UAUGGC ++A+ GU UC A    
      7793 GAUACGGAUUACGGCAAAAGUGGCAUCA---------UAUGGCGUAAAGGUAUCAAG--- 7840    

           <<<<_______>>>>>>>,,))))))))::::::::::::::
        61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102     
             A  CGUAA  U+C   ACU:::A   AA+A +AAA+ +++
      7841 --AAUCGUAAUAUACGCUACUGUCAUCAAAAAGAAAAACAAA 7880    

hit 6   :  11759  11658     9.64 bits
hit 7   :  11759  11658     9.64 bits
           :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
         1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60      
           A  AA+  AAA AAA+   : CGUA  +::::: :  UA GG: :::::GU    AC: G
      4139 AUCAAACGAAAGAAAUGUUUACGUA-GUCAAGCCAUUUACGGUAGCUUGGUAGAGACUUG 4197    

           <<<<_______>>>>>>>,,.))))))))::::::::::::::
        61 gcaaCCGUAAAuugcCuGAC.UAcGaGuaAauauuaaauauuu 102     
           :: :CC UA  : ::C :   UACG :   AU UUA++U +UU
      4198 CGAGCCAUAUUCCCGCGAUUaUACGAAUUCAUCUUAUUUGAUU 4240    

hit 8   :  13350  13253     0.79 bits
hit 9   :  13350  13253     0.79 bits
           :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
         1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60      
           +AA  UA   AA A + :A +C:U:    C:::  AA       :::G G   C  C:A 
      2548 UAAGGUACCGAACAGUCAAGUCAUU---UCCAUUUAAGUAAAGCAUGGCGGCACAUCUAC 2604    

           <<<<_______>>>>>>>,,))))))))::::::::::::::
        61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102     
           : :AC GUA AU: : U:A :A:G+ U: AU UU++  A+ +
      2605 AUGACGGUAUAUCGUAUGA-AAUGGUUUUAUCUUUUGCAACA 2645    

hit 10  :  13846  13740     6.35 bits
hit 11  :  13846  13740     6.35 bits
           :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,.....
         1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCU..... 55      
            A  A+A+A A AA AA:A  :::A A :C ::::A  A G :::: G:  UUCU     
      2052 CAGCAAAUACACAAGAACAACUAAAAACCCGUCAUAGAAAGCAUGAUGGCGUUCUccgaa 2111    

           ,,<<<<<<<_______>>>>>>>,,))))))))::::::::::::::
        56 ACCaGgcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102     
           ACC::GC :CCG    : GC::G CU:::  U:AA+  +A++   ++
      2112 ACCGAGCGGCCGAUUCCAGCUUGCCUUUAACUGAAACCAAUUCCCAA 2158    

hit 12  :  14215  14125     0.90 bits
hit 13  :  14215  14125     0.90 bits
           :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
         1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60      
           AA    AA  AA  A    :+ :UAUA+U: :+++ A A GG   : :AGU         
      1683 AAGCGGAAUCAACGACGCCGUAAUAUAUUCAGAAAUAAACGG---CCAAGUCA------- 1732    

           <<<<_______>>>>>>>,,))))))))::::::::::::::
        61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102     
            C::CCGUAAA::GC+   CUA: +:   ++ U+ AA+++ +
      1733 -CUGCCGUAAACAGCAGCGCUAUCGCAACUACUGCAAAUACA 1773    

hit 14  :  15695  15594     7.88 bits
hit 15  :  15695  15594     7.88 bits
           :::::::::::::::::((((((((,,.,<<<<<<<_______>>>>>>>,,,,,,,,<<
         1 aAaaauaaAaaaaaaaauaCuCgUAUA.aucucgggAAUAUGGcccgagaGUuUCUACCa 59      
            A ++U+A   A  A ++ C :: AUA +:C:::::  UA GG:::::G:GU    AC::
       203 CAGUUUUAUCGAUCACUUCCCUGCAUAgUCCGGCAAUUUACGGUUGCCGGGUAGAAACUU 262     

           <<<<<_______>>>>>>>,,))))))))::::::::::::::
        60 GgcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102     
           +::::CC UA  :::: ::A U :: G + +  U++++U +UU
       263 AUGGGCCAUAUUCCCA-AGAUUAUAUGAGGUCGUGUUUUGAUU 304     

sequence: gi|633168|emb|X83878.1|
hit 0   :    168    267    79.36 bits
hit 1   :    168    267    79.36 bits
           :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
         1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60      
           + A A++A AA A  AA:AC+C:UAUAAU::CG:G AUAUGGC:CG::AGUUUCUACC:G
       168 UUACAAUAUAAUAGGAACACUCAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGG 227     

           <<<<_______>>>>>>>,,))))))))::::::::::::::
        61 gcaaCCGUAAAuugcCuGACUAcGaGuaAauauuaaauauuu 102     
            CA CCGUAAA UG C:GACUA:G+GU:A  A+U  A+    
       228 GCA-CCGUAAA-UGUCCGACUAUGGGUGAGCAAUGGAACCGC 267     

hit 0   :    270    171     2.25 bits
hit 1   :    270    171     2.25 bits
           :::::::::::::::::((((((((,,,<<<<<<<_______>>>>>>>,,,,,,,,<<<
         1 aAaaauaaAaaaaaaaauaCuCgUAUAaucucgggAAUAUGGcccgagaGUuUCUACCaG 60      
             +    +   A    +:AC C:UA  +::: ::   UA GG :: :::GU    AC: G
      2144 CGUGCGGUUCCAUUGCUCACCCAUA-GUCGGACAU-UUACGG-UGCCCGGUAGAAACUUG 2200    

           <<<<_______>>>>>>>,,.))))))))::::::::::::::
        61 gcaaCCGUAAAuugcCuGAC.UAcGaGuaAauauuaaauauuu 102     
           ::::CC UA  ::::C :   UA:G GU: +  U+++AUAUU 
      2201 CGUGCCAUAUCCACGCGAUUaUAUGAGUGUUCCUAUUAUAUUG 2243    


CPU time (search)   : 56.03u 0.38s 00:00:56.41 Elapsed: 00:00:58
CYK memory          :       0.66 MB