---
abstract: 'BioPerl-Run - wrapper toolkit'
author:
- 'BioPerl Team <bioperl-l@bioperl.org>'
build_requires:
Bio::Root::Test: '0'
Bio::Root::Version: '1.007000'
configure_requires:
Module::Build: '0.42'
dynamic_config: 1
generated_by: 'Module::Build version 0.4224, CPAN::Meta::Converter version 2.150005'
license: perl
meta-spec:
url: http://module-build.sourceforge.net/META-spec-v1.4.html
version: '1.4'
name: BioPerl-Run
provides:
Bio::DB::ESoap:
file: lib/Bio/DB/ESoap.pm
version: '1.007002'
Bio::DB::ESoap::WSDL:
file: lib/Bio/DB/ESoap/WSDL.pm
version: '1.007002'
Bio::DB::SoapEUtilities:
file: lib/Bio/DB/SoapEUtilities.pm
version: '1.007002'
Bio::DB::SoapEUtilities::DocSumAdaptor:
file: lib/Bio/DB/SoapEUtilities/DocSumAdaptor.pm
version: '1.007002'
Bio::DB::SoapEUtilities::DocSumAdaptor::docsum:
file: lib/Bio/DB/SoapEUtilities/DocSumAdaptor.pm
version: '1.007002'
Bio::DB::SoapEUtilities::FetchAdaptor:
file: lib/Bio/DB/SoapEUtilities/FetchAdaptor.pm
version: '1.007002'
Bio::DB::SoapEUtilities::FetchAdaptor::seq:
file: lib/Bio/DB/SoapEUtilities/FetchAdaptor/seq.pm
version: '1.007002'
Bio::DB::SoapEUtilities::FetchAdaptor::species:
file: lib/Bio/DB/SoapEUtilities/FetchAdaptor/species.pm
version: '1.007002'
Bio::DB::SoapEUtilities::GQueryAdaptor:
file: lib/Bio/DB/SoapEUtilities/GQueryAdaptor.pm
version: '1.007002'
Bio::DB::SoapEUtilities::GQueryAdaptor::gquery:
file: lib/Bio/DB/SoapEUtilities/GQueryAdaptor.pm
version: '1.007002'
Bio::DB::SoapEUtilities::LinkAdaptor:
file: lib/Bio/DB/SoapEUtilities/LinkAdaptor.pm
version: '1.007002'
Bio::DB::SoapEUtilities::LinkAdaptor::linkset:
file: lib/Bio/DB/SoapEUtilities/LinkAdaptor.pm
version: '1.007002'
Bio::DB::SoapEUtilities::Result:
file: lib/Bio/DB/SoapEUtilities/Result.pm
version: '1.007002'
Bio::Factory::EMBOSS:
file: lib/Bio/Factory/EMBOSS.pm
version: '1.007002'
Bio::Installer::EMBOSS:
file: lib/Bio/Installer/EMBOSS.pm
version: '1.007002'
Bio::Installer::Generic:
file: lib/Bio/Installer/Generic.pm
version: '1.007002'
Bio::Installer::Hyphy:
file: lib/Bio/Installer/Hyphy.pm
version: '1.007002'
Bio::Installer::Muscle:
file: lib/Bio/Installer/Muscle.pm
version: '1.007002'
Bio::Installer::Probcons:
file: lib/Bio/Installer/Probcons.pm
version: '1.007002'
Bio::Installer::SLR:
file: lib/Bio/Installer/SLR.pm
version: '1.007002'
Bio::Tools::Run::Alignment::Amap:
file: lib/Bio/Tools/Run/Alignment/Amap.pm
version: '1.007002'
Bio::Tools::Run::Alignment::Blat:
file: lib/Bio/Tools/Run/Alignment/Blat.pm
version: '1.007002'
Bio::Tools::Run::Alignment::DBA:
file: lib/Bio/Tools/Run/Alignment/DBA.pm
version: '1.007002'
Bio::Tools::Run::Alignment::Exonerate:
file: lib/Bio/Tools/Run/Alignment/Exonerate.pm
version: '1.007002'
Bio::Tools::Run::Alignment::Gmap:
file: lib/Bio/Tools/Run/Alignment/Gmap.pm
version: '1.007002'
Bio::Tools::Run::Alignment::Kalign:
file: lib/Bio/Tools/Run/Alignment/Kalign.pm
version: '1.007002'
Bio::Tools::Run::Alignment::Lagan:
file: lib/Bio/Tools/Run/Alignment/Lagan.pm
version: '1.007002'
Bio::Tools::Run::Alignment::MAFFT:
file: lib/Bio/Tools/Run/Alignment/MAFFT.pm
version: '1.007002'
Bio::Tools::Run::Alignment::MSAProbs:
file: lib/Bio/Tools/Run/Alignment/MSAProbs.pm
version: '1.007002'
Bio::Tools::Run::Alignment::Muscle:
file: lib/Bio/Tools/Run/Alignment/Muscle.pm
version: '1.007002'
Bio::Tools::Run::Alignment::Pal2Nal:
file: lib/Bio/Tools/Run/Alignment/Pal2Nal.pm
version: '1.007002'
Bio::Tools::Run::Alignment::Probalign:
file: lib/Bio/Tools/Run/Alignment/Probalign.pm
version: '1.007002'
Bio::Tools::Run::Alignment::Probcons:
file: lib/Bio/Tools/Run/Alignment/Probcons.pm
version: '1.007002'
Bio::Tools::Run::Alignment::Proda:
file: lib/Bio/Tools/Run/Alignment/Proda.pm
version: '1.007002'
Bio::Tools::Run::Alignment::Sim4:
file: lib/Bio/Tools/Run/Alignment/Sim4.pm
version: '1.007002'
Bio::Tools::Run::Alignment::StandAloneFasta:
file: lib/Bio/Tools/Run/Alignment/StandAloneFasta.pm
version: '1.007002'
Bio::Tools::Run::Analysis:
file: lib/Bio/Tools/Run/Analysis.pm
version: '1.007002'
Bio::Tools::Run::Analysis::Job:
file: lib/Bio/Tools/Run/Analysis.pm
version: '1.007002'
Bio::Tools::Run::Analysis::Job::soap:
file: lib/Bio/Tools/Run/Analysis/soap.pm
version: '1.007002'
Bio::Tools::Run::Analysis::Utils:
file: lib/Bio/Tools/Run/Analysis.pm
version: '1.007002'
Bio::Tools::Run::Analysis::soap:
file: lib/Bio/Tools/Run/Analysis/soap.pm
version: '1.007002'
Bio::Tools::Run::AnalysisFactory:
file: lib/Bio/Tools/Run/AnalysisFactory.pm
version: '1.007002'
Bio::Tools::Run::AnalysisFactory::soap:
file: lib/Bio/Tools/Run/AnalysisFactory/soap.pm
version: '1.007002'
Bio::Tools::Run::AssemblerBase:
file: lib/Bio/Tools/Run/AssemblerBase.pm
version: '1.007002'
Bio::Tools::Run::BEDTools:
file: lib/Bio/Tools/Run/BEDTools.pm
version: '1.007002'
Bio::Tools::Run::BEDTools::Config:
file: lib/Bio/Tools/Run/BEDTools/Config.pm
version: '1.007002'
Bio::Tools::Run::BWA:
file: lib/Bio/Tools/Run/BWA.pm
version: '1.007002'
Bio::Tools::Run::BWA::Config:
file: lib/Bio/Tools/Run/BWA/Config.pm
version: '1.007002'
Bio::Tools::Run::BlastPlus:
file: lib/Bio/Tools/Run/BlastPlus.pm
version: '1.007002'
Bio::Tools::Run::BlastPlus::Config:
file: lib/Bio/Tools/Run/BlastPlus/Config.pm
version: '1.007002'
Bio::Tools::Run::Bowtie:
file: lib/Bio/Tools/Run/Bowtie.pm
version: '1.007002'
Bio::Tools::Run::Bowtie::Config:
file: lib/Bio/Tools/Run/Bowtie/Config.pm
version: '1.007002'
Bio::Tools::Run::Cap3:
file: lib/Bio/Tools/Run/Cap3.pm
version: '1.007002'
Bio::Tools::Run::Coil:
file: lib/Bio/Tools/Run/Coil.pm
version: '1.007002'
Bio::Tools::Run::EMBOSSApplication:
file: lib/Bio/Tools/Run/EMBOSSApplication.pm
version: '1.007002'
Bio::Tools::Run::EMBOSSacd:
file: lib/Bio/Tools/Run/EMBOSSacd.pm
version: '1.007002'
Bio::Tools::Run::ERPIN:
file: lib/Bio/Tools/Run/ERPIN.pm
version: '1.007002'
Bio::Tools::Run::Ensembl:
file: lib/Bio/Tools/Run/Ensembl.pm
version: '1.007002'
Bio::Tools::Run::Eponine:
file: lib/Bio/Tools/Run/Eponine.pm
version: '1.007002'
Bio::Tools::Run::FootPrinter:
file: lib/Bio/Tools/Run/FootPrinter.pm
version: '1.007002'
Bio::Tools::Run::Genemark:
file: lib/Bio/Tools/Run/Genemark.pm
version: '1.007002'
Bio::Tools::Run::Genewise:
file: lib/Bio/Tools/Run/Genewise.pm
version: '1.007002'
Bio::Tools::Run::Genscan:
file: lib/Bio/Tools/Run/Genscan.pm
version: '1.007002'
Bio::Tools::Run::Glimmer:
file: lib/Bio/Tools/Run/Glimmer.pm
version: '1.007002'
Bio::Tools::Run::Hmmer:
file: lib/Bio/Tools/Run/Hmmer.pm
version: '1.007002'
Bio::Tools::Run::Infernal:
file: lib/Bio/Tools/Run/Infernal.pm
version: '1.007002'
Bio::Tools::Run::MCS:
file: lib/Bio/Tools/Run/MCS.pm
version: '1.007002'
Bio::Tools::Run::Maq:
file: lib/Bio/Tools/Run/Maq.pm
version: '1.007002'
Bio::Tools::Run::Maq::Config:
file: lib/Bio/Tools/Run/Maq/Config.pm
version: '1.007002'
Bio::Tools::Run::Match:
file: lib/Bio/Tools/Run/Match.pm
version: '1.007002'
Bio::Tools::Run::Mdust:
file: lib/Bio/Tools/Run/Mdust.pm
version: '1.007002'
Bio::Tools::Run::Meme:
file: lib/Bio/Tools/Run/Meme.pm
version: '1.007002'
Bio::Tools::Run::Minimo:
file: lib/Bio/Tools/Run/Minimo.pm
version: '1.007002'
Bio::Tools::Run::Newbler:
file: lib/Bio/Tools/Run/Newbler.pm
version: '1.007002'
Bio::Tools::Run::Phrap:
file: lib/Bio/Tools/Run/Phrap.pm
version: '1.007002'
Bio::Tools::Run::Phylo::FastTree:
file: lib/Bio/Tools/Run/Phylo/FastTree.pm
version: '1.007002'
Bio::Tools::Run::Phylo::Gerp:
file: lib/Bio/Tools/Run/Phylo/Gerp.pm
version: '1.007002'
Bio::Tools::Run::Phylo::Gumby:
file: lib/Bio/Tools/Run/Phylo/Gumby.pm
version: '1.007002'
Bio::Tools::Run::Phylo::Hyphy::Base:
file: lib/Bio/Tools/Run/Phylo/Hyphy/Base.pm
version: '1.007002'
Bio::Tools::Run::Phylo::Hyphy::BatchFile:
file: lib/Bio/Tools/Run/Phylo/Hyphy/BatchFile.pm
version: '1.007002'
Bio::Tools::Run::Phylo::Hyphy::FEL:
file: lib/Bio/Tools/Run/Phylo/Hyphy/FEL.pm
version: '1.007002'
Bio::Tools::Run::Phylo::Hyphy::Modeltest:
file: lib/Bio/Tools/Run/Phylo/Hyphy/Modeltest.pm
version: '1.007002'
Bio::Tools::Run::Phylo::Hyphy::REL:
file: lib/Bio/Tools/Run/Phylo/Hyphy/REL.pm
version: '1.007002'
Bio::Tools::Run::Phylo::Hyphy::SLAC:
file: lib/Bio/Tools/Run/Phylo/Hyphy/SLAC.pm
version: '1.007002'
Bio::Tools::Run::Phylo::LVB:
file: lib/Bio/Tools/Run/Phylo/LVB.pm
version: '1.007002'
Bio::Tools::Run::Phylo::Molphy::ProtML:
file: lib/Bio/Tools/Run/Phylo/Molphy/ProtML.pm
version: '1.007002'
Bio::Tools::Run::Phylo::Njtree::Best:
file: lib/Bio/Tools/Run/Phylo/Njtree/Best.pm
version: '1.007002'
Bio::Tools::Run::Phylo::Phast::PhastCons:
file: lib/Bio/Tools/Run/Phylo/Phast/PhastCons.pm
version: '1.007002'
Bio::Tools::Run::Phylo::Phast::PhyloFit:
file: lib/Bio/Tools/Run/Phylo/Phast/PhyloFit.pm
version: '1.007002'
Bio::Tools::Run::Phylo::Phylip::Base:
file: lib/Bio/Tools/Run/Phylo/Phylip/Base.pm
version: '1.007002'
Bio::Tools::Run::Phylo::Phylip::Consense:
file: lib/Bio/Tools/Run/Phylo/Phylip/Consense.pm
version: '1.007002'
Bio::Tools::Run::Phylo::Phylip::DrawGram:
file: lib/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm
version: '1.007002'
Bio::Tools::Run::Phylo::Phylip::DrawTree:
file: lib/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm
version: '1.007002'
Bio::Tools::Run::Phylo::Phylip::Neighbor:
file: lib/Bio/Tools/Run/Phylo/Phylip/Neighbor.pm
version: '1.007002'
Bio::Tools::Run::Phylo::Phylip::PhylipConf:
file: lib/Bio/Tools/Run/Phylo/Phylip/PhylipConf.pm
version: '1.007002'
Bio::Tools::Run::Phylo::Phylip::ProtDist:
file: lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm
version: '1.007002'
Bio::Tools::Run::Phylo::Phylip::ProtPars:
file: lib/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm
version: '1.007002'
Bio::Tools::Run::Phylo::Phylip::SeqBoot:
file: lib/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm
version: '1.007002'
Bio::Tools::Run::Phylo::PhyloBase:
file: lib/Bio/Tools/Run/Phylo/PhyloBase.pm
version: '1.007002'
Bio::Tools::Run::Phylo::Phyml:
file: lib/Bio/Tools/Run/Phylo/Phyml.pm
version: '1.007002'
Bio::Tools::Run::Phylo::QuickTree:
file: lib/Bio/Tools/Run/Phylo/QuickTree.pm
version: '1.007002'
Bio::Tools::Run::Phylo::Raxml:
file: lib/Bio/Tools/Run/Phylo/Raxml.pm
version: '1.007002'
Bio::Tools::Run::Phylo::SLR:
file: lib/Bio/Tools/Run/Phylo/SLR.pm
version: '1.007002'
Bio::Tools::Run::Phylo::Semphy:
file: lib/Bio/Tools/Run/Phylo/Semphy.pm
version: '1.007002'
Bio::Tools::Run::Primate:
file: lib/Bio/Tools/Run/Primate.pm
version: '1.007002'
Bio::Tools::Run::Primer3:
file: lib/Bio/Tools/Run/Primer3.pm
version: '1.007002'
Bio::Tools::Run::Prints:
file: lib/Bio/Tools/Run/Prints.pm
version: '1.007002'
Bio::Tools::Run::Profile:
file: lib/Bio/Tools/Run/Profile.pm
version: '1.007002'
Bio::Tools::Run::Promoterwise:
file: lib/Bio/Tools/Run/Promoterwise.pm
version: '1.007002'
Bio::Tools::Run::Pseudowise:
file: lib/Bio/Tools/Run/Pseudowise.pm
version: '1.007002'
Bio::Tools::Run::RNAMotif:
file: lib/Bio/Tools/Run/RNAMotif.pm
version: '1.007002'
Bio::Tools::Run::RepeatMasker:
file: lib/Bio/Tools/Run/RepeatMasker.pm
version: '1.007002'
Bio::Tools::Run::Samtools:
file: lib/Bio/Tools/Run/Samtools.pm
version: '1.007002'
Bio::Tools::Run::Samtools::Config:
file: lib/Bio/Tools/Run/Samtools/Config.pm
version: '1.007002'
Bio::Tools::Run::Seg:
file: lib/Bio/Tools/Run/Seg.pm
version: '1.007002'
Bio::Tools::Run::Signalp:
file: lib/Bio/Tools/Run/Signalp.pm
version: '1.007002'
Bio::Tools::Run::Simprot:
file: lib/Bio/Tools/Run/Simprot.pm
version: '1.007002'
Bio::Tools::Run::StandAloneBlast:
file: lib/Bio/Tools/Run/StandAloneBlast.pm
version: '1.007002'
Bio::Tools::Run::StandAloneBlastPlus:
file: lib/Bio/Tools/Run/StandAloneBlastPlus.pm
version: '1.007002'
Bio::Tools::Run::StandAloneNCBIBlast:
file: lib/Bio/Tools/Run/StandAloneNCBIBlast.pm
version: '1.007002'
Bio::Tools::Run::StandAloneWUBlast:
file: lib/Bio/Tools/Run/StandAloneWUBlast.pm
version: '1.007002'
Bio::Tools::Run::TigrAssembler:
file: lib/Bio/Tools/Run/TigrAssembler.pm
version: '1.007002'
Bio::Tools::Run::Tmhmm:
file: lib/Bio/Tools/Run/Tmhmm.pm
version: '1.007002'
Bio::Tools::Run::TribeMCL:
file: lib/Bio/Tools/Run/TribeMCL.pm
version: '1.007002'
Bio::Tools::Run::Vista:
file: lib/Bio/Tools/Run/Vista.pm
version: '1.007002'
Bio::Tools::Run::WrapperBase:
file: lib/Bio/Tools/Run/WrapperBase.pm
version: '1.007002'
Bio::Tools::Run::tRNAscanSE:
file: lib/Bio/Tools/Run/tRNAscanSE.pm
version: '1.007002'
recommends:
Algorithm::Diff: '0'
Bio::FeatureIO: '0'
Config::Any: '0'
File::Sort: '0'
IO::String: '0'
IPC::Run: '0'
XML::Twig: '0'
requires:
Bio::Root::Root: '0'
Bio::Root::Version: '1.007000'
perl: v5.6.1
resources:
license: http://dev.perl.org/licenses/
version: '1.007002'
x_serialization_backend: 'CPAN::Meta::YAML version 0.018'