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<title>Antibody epitope prediction</title>
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<a class='headline' href='/'><h1>IEDB Analysis Resource</h1></a>
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<li class='active'><a href='iedb_input'>Antibody Epitope Prediction</a></li>
<li><a href='example.jsp'>Example Sequences</a></li>
<li><a href='tutorial.jsp'>Tutorial</a></li>
<li><a href='http://iedb.org/links.php'>External Links</a></li>
<li><a href='javaScript:openWindowAttribute("disclaimer.jsp","Disclaimer", "location=no,menubar=no,resizable=yes,scrollbars=yes,status=no,toolbar=no,height=200,width=300")'>Disclaimer</a></li>
<li><a href='reference.jsp'>Reference</a></li>
<li><a href='contact.jsp'>Contact</a></li>
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<h2>Antibody Epitope Prediction</h2>
<form action='bcell_Prediction' method='post' name='form1' target='_self'>
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<th><div align='left'>Enter a Swiss-Prot Id:</div></th>
<td><div align='left'><input type=text size=12 name='swId' value=''> (example: P02185)</div></td>
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<th colspan=2><div align='left'>Or enter a protein sequence in plain format (50000 residues maximum): </div></th>
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<td colspan=2><textarea name='sequence' cols='60' rows='8' id='sequence'></textarea></td>
<td colspan=2><textarea name='sequence2' cols='60' rows='8' id='sequence2'></textarea></td>
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<th colspan=2><div align='left'>Choose a method: </div></th>
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<input name='method' type='radio' value='49'
><a href='javaScript:openWindow("ScaleInformation?ID=49", "BcellScaleInformation")'>Chou & Fasman Beta-Turn Prediction</a></td>
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<td class='even_row' colspan=2><div align='left'>
<input name='method' type='radio' value='85'
><a href='javaScript:openWindow("ScaleInformation?ID=85", "BcellScaleInformation")'>Emini Surface Accessibility Prediction</a></td>
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<input name='method' type='radio' value='65'
><a href='javaScript:openWindow("ScaleInformation?ID=65", "BcellScaleInformation")'>Karplus & Schulz Flexibility Prediction</a></td>
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<input name='method' type='radio' value='69'
><a href='javaScript:openWindow("ScaleInformation?ID=69", "BcellScaleInformation")'>Kolaskar & Tongaonkar Antigenicity</a></td>
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<input name='method' type='radio' value='5'
><a href='javaScript:openWindow("ScaleInformation?ID=5", "BcellScaleInformation")'>Parker Hydrophilicity Prediction</a></td>
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<input name='method' value='bepipred' type='radio'><a href='javaScript:openWindow("ScaleInformation?ID=6", "BcellScaleInformation")'>Bepipred Linear Epitope Prediction</a></div></td>
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<input type = 'submit' name = 'Submit' value = 'Submit'>
<input type = 'reset' name = 'Reset' value = 'Reset'>
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