use lib qw(./t blib/lib);
use Carp;
use Getopt::Long;
use strict;
use Bio::ConnectDots::ConnectDots;
use Bio::ConnectDots::DB;
use MakeAndLoad;
use DBConnector;
use Class::AutoClass::Args;
use Test::More qw(no_plan);
my $cmd_line="$0 @ARGV";
my($HELP,$VERBOSE,$ECHO_CMD,$DATABASE,$HOST,$USER,$PASSWORD,$LOADDIR,$LOADSAVE,$CREATE,$JUST_CREATE);
GetOptions ('help' => \$HELP,
'verbose' => \$VERBOSE,
'X|echo' => \$ECHO_CMD,
'database=s'=>\$DATABASE,
'db=s'=>\$DATABASE,
'host=s'=>\$HOST,
'user=s'=>\$USER,
'password=s'=>\$PASSWORD,
'loaddir=s'=>\$LOADDIR,
'loadsave=s'=>\$LOADSAVE,
'create'=>\$CREATE,
'just_create'=>\$JUST_CREATE,
) and !$HELP or die <<USAGE;
Usage: $0 [options]
Benchmark connect-the-dots queries
Options
-------
--help Print this message
--verbose (for testing)
-X or --echo Echo command line (for testing and use in scripts)
--database Postgres database (default: --user)
--db Synonym for --database
--host Postgres database (default: socks)
--user Postgres user (default: ngoodman)
--password Postgres password (default: undef)
--loaddir Directory for load files (default: /tmp/user_name)
--loadsave Specifies whether to save load files
Options: 'none', 'last', 'all'. Default: 'all'
--create Create table base_c needed for DotTable queries
--just_create Create base_c and exit
Options may be abbreviated. Values are case insenstive.
USAGE
;
print "$cmd_line\n" if $ECHO_CMD;
my $dbinfo = Bio::ConnectDots::Config::db('test');
$HOST or $HOST=$dbinfo->{host};
$USER or $USER=$dbinfo->{user};
$PASSWORD or $PASSWORD=$dbinfo->{password};
$DATABASE or $DATABASE=$dbinfo->{dbname};
# create database
my $num_fake_cs = 3;
my $dbC = new DBConnector;
$dbC->connect($DATABASE);
my $db=new Bio::ConnectDots::DB(-database=>$DATABASE,-host=>$HOST,-user=>$USER,-password=>$PASSWORD);
unless ($db->is_connected) {
is(1,1,'TEST SKIPPED: No database connection.');
exit;
}
my $dbh = $db->dbh;
# add fake connector sets
my $mal = new MakeAndLoad;
$mal->create_db($num_fake_cs,$dbinfo);
my $cd=new Bio::ConnectDots::ConnectDots(-db=>$db);
$|=1;
sub query {
my $args=new Class::AutoClass::Args(@_);
print $args->name,"\t",`date`;
$cd->query(@_);
}
sub done {print "done\t",`date`; exit;}
query ( -name=>'sets3',
-query_type=>'outer connector',
-create=>1,
-joins=>"
fake_connectorset0.data = fake_connectorset1.data,
fake_connectorset1.data = fake_connectorset2.data
",
);
is(1,1,'Completed Instantiation Test');
done();
sub pdate {print @_,' ',`date`;}