Source: seaview
Section: non-free/science
Priority: optional
Maintainer: Debian-Med Packaging Team <debian-med-packag...@lists.alioth.debian.org>
Uploaders: Charles Plessy <ple...@debian.org>
Build-Depends: debhelper ( >= 7  ), libfltk1.1-dev, libjpeg62-dev, 
 libpng12-dev, libxft-dev,
 libxext-dev,  zlib1g-dev
Standards-Version: 3.8.1
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/seaview/trunk/?rev=0&sc=0
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/seaview/trunk/
Homepage: http://pbil.univ-lyon1.fr/software/seaview.html

Package: seaview
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
Recommends: clustalw, muscle, phyml
Description: Multiplatform interface for sequence alignment and phylogeny
 SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA,
 PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees.
 Alignments can be manually edited. It drives the programs Muscle or Clustal W
 for multiple sequence alignment, and also allows to use any external alignment
 algorithm able to read and write FASTA-formatted files.
 .
 It computes phylogenetic trees by parsimony using PHYLIP's dnapars/protpars
 algorithm, by distance with NJ or BioNJ algorithms on a variety of evolutionary
 distances, or by maximum likelihood using the program PhyML 3.0. SeaView draws
 phylogenetic trees on screen or PostScript files, and allows to download
 sequences from EMBL/GenBank/UniProt using the Internet.