# $Id: Makefile.PL 2012-03-05 14:49:23Z erick.antezana $
use 5.006;
use ExtUtils::MakeMaker 6.56;
$p = 'Date::Manip';
if (!eval "require $p") {
print <<MSG;
Date::Manip is missing. This module is required in order to perform checks
of dates while parsing OBO-formatted files (e.g. 'creation_date' tag).
MSG
}
$p = 'SWISS::Entry';
if (!eval "require $p") {
print <<MSG;
SWISS::Entry is missing. This module is only required in order to
perform parsing operations with UniProt files. However, this
module is not required for using ONTO-PERL. If you do not intend
to use UniProt files, then you may continue, and install
SWISS::Entry in the future.
MSG
}
$p = 'XML::Parser';
if (!eval "require $p") {
print <<MSG;
XML::Parser is missing. This module is only required in order to
perform parsing operations with XML files (obo2owl). However, this
module is not fully required for using ONTO-PERL. If you do not intend
to convert your files to OWL, then you may continue, and install
XML::Parser in the future.
MSG
}
$p = 'XML::XPath';
if (!eval "require $p") {
print <<MSG;
XML::XPath is missing. This module is only required in order to
perform parsing operations with IntAct-XML files. However, this
module is not required for using ONTO-PERL. If you do not intend
to use IntAct XML files, then you may continue, and install
XML::XPath in the future.
MSG
}
my @license = $ExtUtils::MakeMaker::VERSION > 6.56
? qw(LICENSE perl)
: ();
WriteMakefile(
NAME => 'ONTO-PERL',
DISTNAME => 'ONTO-PERL',
ABSTRACT => 'PERL modules for manipulating OBO-formatted ontologies, such as the Gene Ontology (GO)',
VERSION_FROM => 'lib/OBO/Core/Ontology.pm',
MIN_PERL_VERSION => '5',
@license,
PREREQ_PM => {
'Date::Manip' => 6.24,
#'SWISS::Entry' => 1.67, # optional
#'XML::Parser' => 2.41, # optional
#'XML::XPath' => 1.13 # optional
},
PREREQ_FATAL => '1',
EXE_FILES => [
qw(
scripts/get_ancestor_terms.pl
scripts/get_child_terms.pl
scripts/get_descendent_terms.pl
scripts/get_lowest_common_ancestor.pl
scripts/get_obsolete_term_id_vs_def_in_go.pl
scripts/get_obsolete_term_id_vs_name_in_go.pl
scripts/get_obsolete_terms.pl
scripts/get_parent_terms.pl
scripts/get_relationship_id_vs_relationship_def.pl
scripts/get_relationship_id_vs_relationship_name.pl
scripts/get_relationship_id_vs_relationship_namespace.pl
scripts/get_relationship_types.pl
scripts/get_root_terms.pl
scripts/get_subontology_from.pl
scripts/get_term_id_vs_term_def.pl
scripts/get_term_id_vs_term_name.pl
scripts/get_term_id_vs_term_namespace.pl
scripts/get_term_local_neighbourhood.pl
scripts/get_term_synonyms.pl
scripts/get_terms.pl
scripts/get_terms_and_synonyms.pl
scripts/get_terms_by_name.pl
scripts/go2owl.pl
scripts/goa2rdf.pl
scripts/obo2apo.pl
scripts/obo2owl.pl
scripts/obo2rdf.pl
scripts/obo2tran.pl
scripts/obo2xml.pl
scripts/obo_intersection.pl
scripts/obo_transitive_reduction.pl
scripts/obo_trimming.pl
scripts/obo_union.pl
scripts/owl2obo.pl
)
],
($] >= 5.005 ? ## Add these new keywords supported since 5.005
(AUTHOR => 'Erick Antezana <erick.antezana -@- gmail.com>') : ()),
dist => {
'SUFFIX' => '.gz',
'DIST_DEFAULT' => 'all tardist',
'COMPRESS' => 'gzip -9f'
},
clean => {FILES =>"t/data/test0.obo
t/data/test1.obo
t/data/test1.rdf
t/data/test1.xml
t/data/test2.dot
t/data/test2.obo
t/data/test2.owl
t/data/test2.rdf
t/data/test2.xml
t/data/test_go.obo
t/data/test_go_transitive_closure.obo
t/data/test_go_transitive_reduction.obo
t/data/test_goa.rdf
t/data/test_goa_parser_out.obo
t/data/test_intact_parser_out.obo
t/data/test_ncbi.rdf
t/data/test_ncbi_parser_out.obo
t/data/test_ulo_apo.dot
t/data/test_ulo_apo.owl
t/data/test_ulo_apo2.obo
t/data/test_uniprot_parser_out.obo
t/data/test_uo.rdf"},
);