#!/usr/bin/env perl
# $Id: owl2obo.pl 2015-10-29 erick.antezana $
#
# script : owl2obo.pl
# Purpose : Converts a file from OWL to OBO.
# Usage : owl2obo.pl my_ontology.owl > my_ontology.obo
# License : Copyright (c) 2006-2015 by Erick Antezana. All rights reserved.
# This program is free software; you can redistribute it and/or
# modify it under the same terms as Perl itself.
# Contact : Erick Antezana <erick.antezana -@- gmail.com>
#
###############################################################################
use Carp;
use strict;
use warnings;
use OBO::Parser::OWLParser;
use Getopt::Long;
my %opts = ();
GetOptions (\%opts,
'f=s{1,1}',
'help|h')
or die("Error in command line arguments, ask for help: -h\n");
my $file = $opts{f};
unless ($file) {print_help()};
sub print_help {
print "\n";
print "\tdescription: OWL to OBO translator (oboinowl mapping).\n";
print "\tusage : owl2obo.pl [options]\n";
print "\toptions :\n";
print "\t\t-f OBO input file\n";
print "\texample:\n";
print "\t\tperl owl2obo.pl -f go.obo\n";
exit;
}
my $my_parser = OBO::Parser::OWLParser->new();
my $ontology = $my_parser->work(shift(@ARGV));
$ontology->export('obo', \*STDOUT);
exit 0;
__END__
=head1 NAME
owl2obo.pl - OWL to OBO translator (oboinowl mapping).
=head1 DESCRIPTION
This script transforms an OWL file (cf. oboinowl mapping) into an OBO one (spec 1.4).
Use the obo2owl.pl to get the round-trip transformation.
This is not a universal translator from any OWL file into an OBO one.
=head1 AUTHOR
Erick Antezana, E<lt>erick.antezana -@- gmail.comE<gt>
=head1 COPYRIGHT AND LICENSE
Copyright (c) 2006-2015 by Erick Antezana. All rights reserved.
This library is free software; you can redistribute it and/or modify
it under the same terms as Perl itself, either Perl version 5.8.7 or,
at your option, any later version of Perl 5 you may have available.
=cut