seqfile = D:\A\MySoft\paml4.6\stewart.aa
treefile = D:\A\MySoft\paml4.6\stewart.trees
outfile = mlc
noisy = 9
verbose = 1
runmode = 0
seqtype = 2
aaRatefile =
model = 0
Mgene = 0
fix_alpha = 1
alpha = 0
Malpha = 0
ncatG = 5
clock = 0
getSE = 1
RateAncestor = 1
Small_Diff = .5e-6
cleandata = 0
ndata = 1
method = 0