0.267828
0.984474 0.327059
1.199805 0.000000 8.931515
0.360016 0.232374 0.000000 0.000000
0.887753 2.439939 1.028509 1.348551 0.000000
1.961167 0.000000 1.493409 11.388659 0.000000 7.086022
2.386111 0.087791 1.385352 1.240981 0.107278 0.281581 0.811907
0.228116 2.383148 5.290024 0.868241 0.282729 6.011613 0.439469 0.106802
0.653416 0.632629 0.768024 0.239248 0.438074 0.180393 0.609526 0.000000 0.076981
0.406431 0.154924 0.341113 0.000000 0.000000 0.730772 0.112880 0.071514 0.443504 2.556685
0.258635 4.610124 3.148371 0.716913 0.000000 1.519078 0.830078 0.267683 0.270475 0.460857 0.180629
0.717840 0.896321 0.000000 0.000000 0.000000 1.127499 0.304803 0.170372 0.000000 3.332732 5.230115 2.411739
0.183641 0.136906 0.138503 0.000000 0.000000 0.000000 0.000000 0.153478 0.475927 1.951951 1.565160 0.000000 0.921860
2.485920 1.028313 0.419244 0.133940 0.187550 1.526188 0.507003 0.347153 0.933709 0.119152 0.316258 0.335419 0.170205 0.110506
4.051870 1.531590 4.885892 0.956097 1.598356 0.561828 0.793999 2.322243 0.353643 0.247955 0.171432 0.954557 0.619951 0.459901 2.427202
3.680365 0.265745 2.271697 0.660930 0.162366 0.525651 0.340156 0.306662 0.226333 1.900739 0.331090 1.350599 1.031534 0.136655 0.782857 5.436674
0.000000 2.001375 0.224968 0.000000 0.000000 0.000000 0.000000 0.000000 0.270564 0.000000 0.461776 0.000000 0.000000 0.762354 0.000000 0.740819 0.000000
0.244139 0.078012 0.946940 0.000000 0.953164 0.000000 0.214717 0.000000 1.265400 0.374834 0.286572 0.132142 0.000000 6.952629 0.000000 0.336289 0.417839 0.608070
2.059564 0.240368 0.158067 0.178316 0.484678 0.346983 0.367250 0.538165 0.438715 8.810038 1.745156 0.103850 2.565955 0.123606 0.485026 0.303836 1.561997 0.000000 0.279379
0.087127 0.040904 0.040432 0.046872 0.033474 0.038255 0.049530 0.088612 0.033619 0.036886 0.085357 0.080481 0.014753 0.039772 0.050680 0.069577 0.058542 0.010494 0.029916 0.064718
A R N D C Q E G H I L K M F P S T W Y V
Ala Arg Asn Asp Cys Gln Glu Gly His Ile Leu Lys Met Phe Pro Ser Thr Trp Tyr Val
Dayhoff rate matrix prepared using the DCMut method*
----------------------------------------------------
The first part above indicates the symmetric 'exchangeability' parameters s_ij,
where s_ij = s_ji.
The second part gives the amino acid equilibrium frequencies pi_i.
The net replacement rate from i to j is q_ij = pi_j*s_ij.
This model is usually scaled so that the mean rate of change at
equilibrium, Sum_i Sum_j!=i pi_i*q_ij, equals 1. You should check this
scaling before using the matrix above. The PAML package will perform
this scaling.
//
*Prepared by Carolin Kosiol and Nick Goldman, December 2003.
See the following paper for more details:
Kosiol, C., and Goldman, N. 2005. Different versions of the Dayhoff rate matrix.
Molecular Biology and Evolution 22:193-199.
See also http://www.ebi.ac.uk/goldman/dayhoff