# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.0rc2 (March 2010); http://hmmer.org/
# Copyright (C) 2010 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: ../pfam/snf2_n-helic_c.hmm
# target sequence database: /home/bargs001/projects/snf2/arabidopsis_thaliana/snf2_n_proteins.fa
# show alignments in output: no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: SNF2_N [M=297]
Accession: PF00176.16
Description: SNF2 family N-terminal domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.6e-99 322.4 0.1 6.6e-99 322.4 0.1 2.7 2 AT3G06400.1 | Symbols: CHR11 | CHR11 (CHROMATIN-REMODELING P
1.3e-98 321.4 0.2 1.3e-98 321.4 0.1 2.5 2 AT5G18620.2 | Symbols: CHR17 | CHR17 (CHROMATIN REMODELING F
9.3e-98 318.6 0.1 9.3e-98 318.6 0.0 2.1 2 AT3G06010.1 | Symbols: ATCHR12 | ATCHR12; ATP binding / DNA
1.2e-97 318.3 0.1 1.2e-97 318.3 0.1 2.3 2 AT5G19310.1 | Symbols: | homeotic gene regulator, putative
3.5e-94 306.9 1.5 3.5e-94 306.9 1.0 1.6 2 AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1,
7.8e-94 305.7 1.0 7.8e-94 305.7 0.7 2.4 2 AT2G28290.1 | Symbols: SYD, CHR3 | SYD (SPLAYED); ATPase/ ch
1e-93 305.4 4.2 1e-93 305.4 2.9 2.7 2 AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | PIE1 (PHOTOPERIO
1.1e-91 298.6 0.0 3e-91 297.2 0.0 1.8 1 AT2G18760.1 | Symbols: CHR8 | CHR8 (chromatin remodeling 8);
1.1e-89 292.1 2.0 1.1e-89 292.1 1.4 2.2 2 AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 (INO80 ORTHOLO
7.4e-89 289.4 0.1 7.4e-89 289.4 0.1 2.2 1 AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcriptio
5.7e-88 286.5 5.0 1.2e-87 285.4 3.4 1.6 1 AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | PKL (PIC
2.2e-86 281.3 1.0 5.1e-86 280.1 0.7 1.7 1 AT2G13370.1 | Symbols: CHR5 | CHR5 (chromatin remodeling 5);
6.5e-84 273.2 0.1 6.5e-84 273.2 0.1 2.8 2 AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REMODELING 4);
4.2e-82 267.2 0.0 9.2e-82 266.1 0.0 1.6 1 AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 |
1.4e-81 265.5 0.0 2.3e-81 264.8 0.0 1.4 1 AT3G19210.1 | Symbols: ATRAD54, CHR25 | ATRAD54 (ARABIDOPSIS
4.3e-80 260.6 5.6 3.2e-79 257.8 3.9 2.3 1 AT4G31900.1 | Symbols: | chromatin remodeling factor, putat
8.8e-79 256.3 0.0 1.6e-78 255.5 0.0 1.4 1 AT1G03750.1 | Symbols: CHR9 | SWI2 (SWITCH 2); ATP binding /
7.7e-75 243.4 0.0 1.3e-74 242.6 0.0 1.4 1 AT5G63950.1 | Symbols: CHR24 | CHR24 (chromatin remodeling 2
9.3e-73 236.5 0.1 2.4e-72 235.2 0.0 1.8 1 AT1G08600.1 | Symbols: ATRX, CHR20 | ATRX; ATP binding / DNA
3.2e-69 224.9 0.2 5.5e-69 224.2 0.1 1.4 1 AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | ETL1; ATP bindin
3.9e-67 218.1 0.0 6.6e-67 217.3 0.0 1.4 1 AT5G22750.1 | Symbols: RAD5 | RAD5; ATP binding / ATP-depend
4.4e-67 217.9 0.0 6.7e-67 217.3 0.0 1.3 1 AT2G44980.2 | Symbols: | transcription regulatory protein S
1.9e-60 196.1 0.0 4.1e-60 195.0 0.0 1.6 1 AT5G43530.1 | Symbols: | SNF2 domain-containing protein / h
1.6e-58 189.8 1.0 2.1e-30 97.5 0.3 3.1 2 AT1G05120.1 | Symbols: | SNF2 domain-containing protein / h
6e-58 187.9 0.6 9e-58 187.3 0.0 1.5 1 AT5G05130.1 | Symbols: | SNF2 domain-containing protein / h
1.5e-56 183.4 0.0 2.2e-56 182.8 0.0 1.3 1 AT1G11100.1 | Symbols: | SNF2 domain-containing protein / h
1.4e-55 180.2 0.1 1.1e-53 173.9 0.0 2.2 1 AT1G50410.1 | Symbols: | SNF2 domain-containing protein / h
7.6e-55 177.7 0.1 1.3e-52 170.4 0.1 2.3 1 AT3G20010.1 | Symbols: | SNF2 domain-containing protein / h
2.9e-54 175.8 1.6 2.1e-52 169.7 0.4 2.4 2 AT3G16600.1 | Symbols: | SNF2 domain-containing protein / h
5e-53 171.8 0.0 1.3e-30 98.2 0.0 2.2 2 AT1G61140.1 | Symbols: EDA16 | EDA16 (embryo sac development
8.4e-51 164.5 0.0 1.2e-49 160.6 0.0 2.4 2 AT1G02670.1 | Symbols: | DNA repair protein, putative | chr
7.5e-40 128.5 0.1 4.8e-38 122.6 0.0 3.4 3 AT2G40770.1 | Symbols: | ATP binding / DNA binding / helica
1.1e-36 118.1 0.8 2.3e-36 117.1 0.5 1.6 1 AT1G05490.1 | Symbols: chr31 | chr31 (chromatin remodeling 3
3e-35 113.4 0.9 5.5e-35 112.5 0.0 1.8 2 AT2G21450.1 | Symbols: CHR34 | CHR34 (chromatin remodeling 3
3.5e-35 113.2 0.0 8.2e-35 112.0 0.0 1.6 1 AT1G48310.1 | Symbols: CHR18, CHA18 | CHR18; ATP binding / D
1.6e-34 111.0 0.1 3.7e-34 109.8 0.1 1.6 1 AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | DRD1 (DEFECTIVE I
3.3e-31 100.1 0.0 6.9e-31 99.1 0.0 1.4 1 AT5G07810.1 | Symbols: | SNF2 domain-containing protein / h
6.9e-30 95.8 0.1 1.5e-29 94.7 0.1 1.5 1 AT3G24340.1 | Symbols: chr40 | chr40 (chromatin remodeling 4
9.5e-28 88.8 0.0 1.9e-27 87.8 0.0 1.5 1 AT3G42670.1 | Symbols: CHR38, CLSY | CHR38 (CHROMATIN REMODE
4.2e-27 86.7 0.2 1.7e-20 64.9 0.3 2.5 2 AT3G54460.1 | Symbols: | SNF2 domain-containing protein / h
8.8e-27 85.6 0.0 2e-26 84.4 0.0 1.6 1 AT5G20420.1 | Symbols: CHR42 | CHR42 (chromatin remodeling 4
Domain annotation for each sequence:
>> AT3G06400.1 | Symbols: CHR11 | CHR11 (CHROMATIN-REMODELING PROTEIN 11); ATP binding / DNA binding / DNA-dependent AT
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.2 2.6 0.87 0.89 201 277 .. 74 147 .. 58 159 .. 0.63
2 ! 322.4 0.1 6.4e-99 6.6e-99 1 297 [] 192 468 .. 192 468 .. 0.97
>> AT5G18620.2 | Symbols: CHR17 | CHR17 (CHROMATIN REMODELING FACTOR17); ATP binding / DNA binding / DNA-dependent ATPa
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.1 1.5 0.94 0.97 203 261 .. 81 137 .. 64 163 .. 0.45
2 ! 321.4 0.1 1.3e-98 1.3e-98 1 297 [] 197 473 .. 197 473 .. 0.96
>> AT3G06010.1 | Symbols: ATCHR12 | ATCHR12; ATP binding / DNA binding / helicase/ nucleic acid binding | chr3:1802435-
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.5 0.4 5.8 5.9 231 259 .. 257 285 .. 228 340 .. 0.49
2 ! 318.6 0.0 9e-98 9.3e-98 1 297 [] 436 723 .. 436 723 .. 0.94
>> AT5G19310.1 | Symbols: | homeotic gene regulator, putative | chr5:6498906-6503432 FORWARD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.6 1.1 6.3 6.5 213 270 .. 197 254 .. 183 298 .. 0.61
2 ! 318.3 0.1 1.1e-97 1.2e-97 1 297 [] 389 675 .. 389 675 .. 0.95
>> AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.1 0.1 8.9 9.1 246 266 .. 102 121 .. 56 158 .. 0.59
2 ! 306.9 1.0 3.4e-94 3.5e-94 1 297 [] 205 501 .. 205 501 .. 0.91
>> AT2G28290.1 | Symbols: SYD, CHR3 | SYD (SPLAYED); ATPase/ chromatin binding | chr2:12056771-12072950 FORWARD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.9 0.2 3.8 3.9 179 228 .. 682 736 .. 673 745 .. 0.72
2 ! 305.7 0.7 7.6e-94 7.8e-94 1 297 [] 757 1047 .. 757 1047 .. 0.94
>> AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1); ATP binding / DNA bind
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 305.4 2.9 9.9e-94 1e-93 1 297 [] 539 823 .. 539 823 .. 0.96
2 ? -3.2 0.8 9.6 9.8 69 250 .. 1459 1508 .. 1428 1545 .. 0.46
>> AT2G18760.1 | Symbols: CHR8 | CHR8 (chromatin remodeling 8); ATP binding / DNA binding / helicase/ nucleic acid bind
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 297.2 0.0 3e-91 3e-91 1 297 [] 388 707 .. 388 707 .. 0.97
>> AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 (INO80 ORTHOLOG); ATP binding / DNA binding / helicase/ nucleic acid b
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.5 0.5 3 3.1 203 222 .. 436 460 .. 408 488 .. 0.43
2 ! 292.1 1.4 1.1e-89 1.1e-89 1 296 [. 589 885 .. 589 886 .. 0.92
>> AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription regulatory protein SNF2, putative | chr2:18923304-1893
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 289.4 0.1 7.2e-89 7.4e-89 1 296 [. 984 1288 .. 984 1289 .. 0.93
>> AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | PKL (PICKLE); ATPase/ DNA binding / DNA helicase | chr2:10714411
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 285.4 3.4 1.2e-87 1.2e-87 1 297 [] 276 571 .. 276 571 .. 0.94
>> AT2G13370.1 | Symbols: CHR5 | CHR5 (chromatin remodeling 5); ATP binding / DNA binding / chromatin binding / helicas
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 280.1 0.7 5e-86 5.1e-86 1 296 [. 628 911 .. 628 912 .. 0.93
>> AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REMODELING 4); ATP binding / DNA binding / chromatin binding / helicas
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 273.2 0.1 6.3e-84 6.5e-84 1 297 [] 692 980 .. 692 980 .. 0.94
2 ? -0.5 0.1 1.4 1.5 207 271 .. 1393 1456 .. 1376 1473 .. 0.73
>> AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | RGD3 (ROOT GROWTH DEFECTIVE 3); ATP binding / DNA bindin
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 266.1 0.0 9e-82 9.2e-82 1 296 [. 1447 1757 .. 1447 1758 .. 0.91
>> AT3G19210.1 | Symbols: ATRAD54, CHR25 | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54); ATP binding / DNA binding / helicase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 264.8 0.0 2.2e-81 2.3e-81 1 296 [. 183 486 .. 183 487 .. 0.93
>> AT4G31900.1 | Symbols: | chromatin remodeling factor, putative | chr4:15431528-15438443 FORWARD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 257.8 3.9 3.1e-79 3.2e-79 1 297 [] 228 500 .. 228 500 .. 0.92
>> AT1G03750.1 | Symbols: CHR9 | SWI2 (SWITCH 2); ATP binding / DNA binding / helicase/ nucleic acid binding | chr1:937
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 255.5 0.0 1.5e-78 1.6e-78 1 273 [. 142 419 .. 142 439 .. 0.95
>> AT5G63950.1 | Symbols: CHR24 | CHR24 (chromatin remodeling 24); ATP binding / DNA binding / helicase/ nucleic acid b
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 242.6 0.0 1.3e-74 1.3e-74 1 296 [. 380 680 .. 380 681 .. 0.91
>> AT1G08600.1 | Symbols: ATRX, CHR20 | ATRX; ATP binding / DNA binding / helicase/ nucleic acid binding | chr1:2724562
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 235.2 0.0 2.3e-72 2.4e-72 1 297 [] 722 1040 .. 722 1040 .. 0.92
>> AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | ETL1; ATP binding / DNA binding / helicase/ nucleic acid binding | chr2:
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 224.2 0.1 5.3e-69 5.5e-69 1 296 [. 216 517 .. 216 518 .. 0.87
>> AT5G22750.1 | Symbols: RAD5 | RAD5; ATP binding / ATP-dependent helicase/ DNA binding / helicase/ hydrolase, acting
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 217.3 0.0 6.5e-67 6.6e-67 1 296 [. 351 736 .. 351 737 .. 0.93
>> AT2G44980.2 | Symbols: | transcription regulatory protein SNF2, putative | chr2:18552343-18556669 REVERSE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 217.3 0.0 6.5e-67 6.7e-67 1 297 [] 54 356 .. 54 356 .. 0.90
>> AT5G43530.1 | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-c
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 195.0 0.0 4e-60 4.1e-60 1 296 [. 619 985 .. 619 986 .. 0.92
>> AT1G05120.1 | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-c
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 88.6 0.0 1.1e-27 1.1e-27 1 113 [. 142 253 .. 142 269 .. 0.91
2 ! 97.5 0.3 2e-30 2.1e-30 86 297 .] 309 555 .. 284 555 .. 0.73
>> AT5G05130.1 | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-c
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 187.3 0.0 8.8e-58 9e-58 1 294 [. 215 573 .. 215 576 .. 0.94
>> AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 182.8 0.0 2.1e-56 2.2e-56 1 296 [. 545 882 .. 545 883 .. 0.90
>> AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-c
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 173.9 0.0 1.1e-53 1.1e-53 1 297 [] 229 640 .. 229 640 .. 0.85
>> AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-c
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 170.4 0.1 1.2e-52 1.3e-52 1 297 [] 284 711 .. 284 711 .. 0.87
>> AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-c
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 169.7 0.4 2e-52 2.1e-52 1 231 [. 56 309 .. 56 312 .. 0.92
2 ? 4.6 0.0 0.04 0.041 275 297 .] 333 355 .. 309 355 .. 0.74
>> AT1G61140.1 | Symbols: EDA16 | EDA16 (embryo sac development arrest 16); ATP binding / DNA binding / helicase/ nucle
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 71.3 0.0 1.9e-22 2e-22 1 113 [. 559 725 .. 559 737 .. 0.92
2 ! 98.2 0.0 1.2e-30 1.3e-30 117 296 .. 781 955 .. 767 956 .. 0.92
>> AT1G02670.1 | Symbols: | DNA repair protein, putative | chr1:576046-580299 FORWARD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 160.6 0.0 1.2e-49 1.2e-49 1 297 [] 137 438 .. 137 438 .. 0.78
2 ? -3.0 0.0 8.2 8.4 221 260 .. 629 668 .. 609 675 .. 0.69
>> AT2G40770.1 | Symbols: | ATP binding / DNA binding / helicase/ nucleic acid binding / protein binding / zinc ion bi
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 122.6 0.0 4.7e-38 4.8e-38 1 297 [] 291 782 .. 291 782 .. 0.89
2 ? -3.0 0.1 8.3 8.6 233 266 .. 954 988 .. 948 1038 .. 0.66
3 ? -3.2 0.3 9.6 9.8 179 254 .. 1214 1294 .. 1197 1321 .. 0.54
>> AT1G05490.1 | Symbols: chr31 | chr31 (chromatin remodeling 31); ATP binding / DNA binding / helicase/ nucleic acid b
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 117.1 0.5 2.2e-36 2.3e-36 1 270 [. 826 1149 .. 826 1190 .. 0.87
>> AT2G21450.1 | Symbols: CHR34 | CHR34 (chromatin remodeling 34); ATP binding / DNA binding / helicase/ nucleic acid b
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.8 0.1 3.6 3.7 238 261 .. 206 229 .. 99 257 .. 0.55
2 ! 112.5 0.0 5.4e-35 5.5e-35 1 271 [. 268 572 .. 268 615 .. 0.81
>> AT1G48310.1 | Symbols: CHR18, CHA18 | CHR18; ATP binding / DNA binding / helicase/ nucleic acid binding | chr1:17848
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 112.0 0.0 8e-35 8.2e-35 1 284 [. 175 449 .. 175 463 .. 0.82
>> AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1); ATP binding / DNA bin
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 109.8 0.1 3.6e-34 3.7e-34 1 259 [. 353 643 .. 353 669 .. 0.73
>> AT5G07810.1 | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease dom
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 99.1 0.0 6.7e-31 6.9e-31 16 268 .. 219 466 .. 207 488 .. 0.75
>> AT3G24340.1 | Symbols: chr40 | chr40 (chromatin remodeling 40); ATP binding / DNA binding / helicase/ nucleic acid b
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 94.7 0.1 1.4e-29 1.5e-29 1 266 [. 580 878 .. 580 895 .. 0.83
>> AT3G42670.1 | Symbols: CHR38, CLSY | CHR38 (CHROMATIN REMODELING 38); ATP binding / DNA binding / helicase/ nucleic
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 87.8 0.0 1.9e-27 1.9e-27 1 204 [. 677 939 .. 677 1007 .. 0.78
>> AT3G54460.1 | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.9 0.0 1.7e-06 1.8e-06 1 40 [. 333 411 .. 333 425 .. 0.95
2 ! 64.9 0.3 1.7e-20 1.7e-20 48 267 .. 754 966 .. 737 994 .. 0.80
>> AT5G20420.1 | Symbols: CHR42 | CHR42 (chromatin remodeling 42); ATP binding / DNA binding / helicase/ nucleic acid b
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 84.4 0.0 2e-26 2e-26 1 194 [. 682 921 .. 682 1015 .. 0.78
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (297 nodes)
Target sequences: 42 (51779 residues)
Passed MSV filter: 42 (1); expected 0.8 (0.02)
Passed bias filter: 42 (1); expected 0.8 (0.02)
Passed Vit filter: 42 (1); expected 0.0 (0.001)
Passed Fwd filter: 41 (0.97619); expected 0.0 (1e-05)
Initial search space (Z): 42 [actual number of targets]
Domain search space (domZ): 41 [number of targets reported over threshold]
# CPU time: 0.20u 0.00s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 73.23
//
Query: Helicase_C [M=78]
Accession: PF00271.24
Description: Helicase conserved C-terminal domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2e-19 61.0 0.0 1.8e-18 57.9 0.0 2.3 2 AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1,
3.3e-19 60.3 0.0 7.2e-18 56.0 0.0 2.6 2 AT1G03750.1 | Symbols: CHR9 | SWI2 (SWITCH 2); ATP binding /
4.9e-19 59.7 0.0 8.3e-17 52.6 0.0 3.1 2 AT5G19310.1 | Symbols: | homeotic gene regulator, putative
1.4e-18 58.2 0.0 7.4e-18 56.0 0.0 2.3 1 AT3G06010.1 | Symbols: ATCHR12 | ATCHR12; ATP binding / DNA
1.5e-18 58.2 0.0 3.9e-18 56.8 0.0 1.8 1 AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | PIE1 (PHOTOPERIO
2.3e-18 57.6 0.0 6.6e-18 56.1 0.0 1.9 1 AT2G13370.1 | Symbols: CHR5 | CHR5 (chromatin remodeling 5);
9.5e-18 55.6 0.0 3e-17 54.0 0.0 2.0 1 AT5G18620.2 | Symbols: CHR17 | CHR17 (CHROMATIN REMODELING F
2.7e-17 54.1 0.0 7.1e-17 52.8 0.0 1.8 1 AT2G18760.1 | Symbols: CHR8 | CHR8 (chromatin remodeling 8);
3.7e-17 53.7 0.0 2.4e-16 51.1 0.0 2.3 2 AT1G05490.1 | Symbols: chr31 | chr31 (chromatin remodeling 3
3.8e-17 53.7 0.0 1.1e-16 52.2 0.0 1.9 1 AT3G06400.1 | Symbols: CHR11 | CHR11 (CHROMATIN-REMODELING P
6.3e-17 53.0 0.0 1.6e-16 51.6 0.0 1.8 1 AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 (INO80 ORTHOLO
6.4e-17 52.9 0.1 1.7e-16 51.6 0.1 1.8 1 AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | ETL1; ATP bindin
7.6e-17 52.7 0.0 7.3e-16 49.6 0.0 2.7 2 AT1G08600.1 | Symbols: ATRX, CHR20 | ATRX; ATP binding / DNA
8.5e-17 52.6 0.0 2.6e-16 51.0 0.0 1.9 1 AT5G63950.1 | Symbols: CHR24 | CHR24 (chromatin remodeling 2
1.2e-16 52.1 0.0 5.6e-16 49.9 0.0 2.1 1 AT5G43530.1 | Symbols: | SNF2 domain-containing protein / h
2.4e-16 51.1 0.0 6.6e-16 49.7 0.0 1.9 1 AT4G31900.1 | Symbols: | chromatin remodeling factor, putat
2.4e-16 51.1 0.0 5.8e-16 49.9 0.0 1.7 1 AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | PKL (PIC
2.9e-16 50.8 0.0 1.2e-15 48.9 0.0 2.2 1 AT2G28290.1 | Symbols: SYD, CHR3 | SYD (SPLAYED); ATPase/ ch
4e-16 50.4 0.0 8.8e-16 49.3 0.0 1.6 1 AT1G48310.1 | Symbols: CHR18, CHA18 | CHR18; ATP binding / D
1.5e-15 48.6 0.1 3.5e-15 47.4 0.0 1.6 1 AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REMODELING 4);
2e-15 48.2 0.1 1.3e-14 45.5 0.0 2.6 1 AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcriptio
3.7e-15 47.3 0.0 7.8e-15 46.3 0.0 1.6 1 AT1G11100.1 | Symbols: | SNF2 domain-containing protein / h
4e-15 47.2 0.0 9.4e-15 46.0 0.0 1.6 1 AT5G22750.1 | Symbols: RAD5 | RAD5; ATP binding / ATP-depend
5.6e-15 46.7 0.0 1.2e-14 45.7 0.0 1.6 1 AT2G44980.2 | Symbols: | transcription regulatory protein S
6.7e-15 46.5 0.0 2e-14 44.9 0.0 1.8 1 AT3G24340.1 | Symbols: chr40 | chr40 (chromatin remodeling 4
8.8e-15 46.1 0.0 2.1e-14 44.9 0.0 1.7 1 AT3G20010.1 | Symbols: | SNF2 domain-containing protein / h
1.2e-14 45.7 0.0 2.5e-14 44.6 0.0 1.6 1 AT3G19210.1 | Symbols: ATRAD54, CHR25 | ATRAD54 (ARABIDOPSIS
1.3e-14 45.5 0.0 5e-14 43.7 0.0 2.0 1 AT5G05130.1 | Symbols: | SNF2 domain-containing protein / h
4e-14 44.0 0.0 9.4e-14 42.8 0.0 1.7 1 AT1G61140.1 | Symbols: EDA16 | EDA16 (embryo sac development
6.3e-14 43.4 0.0 1.4e-13 42.3 0.0 1.6 1 AT1G50410.1 | Symbols: | SNF2 domain-containing protein / h
6.3e-13 40.2 0.0 2e-12 38.5 0.0 1.9 1 AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 |
7.9e-13 39.8 0.0 1.7e-12 38.7 0.0 1.6 1 AT1G02670.1 | Symbols: | DNA repair protein, putative | chr
9.8e-13 39.5 0.0 3e-12 38.0 0.0 1.9 1 AT1G05120.1 | Symbols: | SNF2 domain-containing protein / h
3.7e-12 37.7 0.0 1.2e-11 36.0 0.0 1.9 1 AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | DRD1 (DEFECTIVE I
7.2e-12 36.8 0.0 1.9e-11 35.4 0.0 1.8 1 AT5G20420.1 | Symbols: CHR42 | CHR42 (chromatin remodeling 4
2.2e-11 35.2 0.0 9.7e-11 33.1 0.0 2.1 2 AT3G42670.1 | Symbols: CHR38, CLSY | CHR38 (CHROMATIN REMODE
2.4e-11 35.1 0.0 8.5e-11 33.3 0.0 2.0 1 AT5G07810.1 | Symbols: | SNF2 domain-containing protein / h
6e-11 33.8 0.0 1.5e-10 32.5 0.0 1.7 1 AT3G16600.1 | Symbols: | SNF2 domain-containing protein / h
5.8e-10 30.7 0.0 1.5e-09 29.4 0.0 1.7 1 AT2G21450.1 | Symbols: CHR34 | CHR34 (chromatin remodeling 3
1.9e-08 25.8 0.0 4e-08 24.8 0.0 1.6 1 AT3G54460.1 | Symbols: | SNF2 domain-containing protein / h
7.9e-08 23.8 0.0 2e-07 22.5 0.0 1.7 1 AT2G40770.1 | Symbols: | ATP binding / DNA binding / helica
Domain annotation for each sequence:
>> AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.0 0.0 2.1 2.1 6 22 .. 274 290 .. 271 307 .. 0.82
2 ! 57.9 0.0 1.8e-18 1.8e-18 3 78 .] 560 638 .. 558 638 .. 0.97
>> AT1G03750.1 | Symbols: CHR9 | SWI2 (SWITCH 2); ATP binding / DNA binding / helicase/ nucleic acid binding | chr1:937
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.3 0.0 0.85 0.87 8 40 .. 224 252 .. 220 253 .. 0.89
2 ! 56.0 0.0 7.1e-18 7.2e-18 1 78 [] 562 641 .. 562 641 .. 0.97
>> AT5G19310.1 | Symbols: | homeotic gene regulator, putative | chr5:6498906-6503432 FORWARD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.4 0.0 0.18 0.18 5 39 .. 458 490 .. 455 491 .. 0.90
2 ! 52.6 0.0 8.1e-17 8.3e-17 3 78 .] 731 809 .. 729 809 .. 0.96
>> AT3G06010.1 | Symbols: ATCHR12 | ATCHR12; ATP binding / DNA binding / helicase/ nucleic acid binding | chr3:1802435-
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 56.0 0.0 7.2e-18 7.4e-18 3 78 .] 779 857 .. 777 857 .. 0.97
>> AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1); ATP binding / DNA bind
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 56.8 0.0 3.8e-18 3.9e-18 3 78 .] 1111 1188 .. 1109 1188 .. 0.96
>> AT2G13370.1 | Symbols: CHR5 | CHR5 (chromatin remodeling 5); ATP binding / DNA binding / chromatin binding / helicas
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 56.1 0.0 6.5e-18 6.6e-18 2 78 .] 974 1053 .. 973 1053 .. 0.97
>> AT5G18620.2 | Symbols: CHR17 | CHR17 (CHROMATIN REMODELING FACTOR17); ATP binding / DNA binding / DNA-dependent ATPa
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 54.0 0.0 3e-17 3e-17 2 78 .] 530 609 .. 529 609 .. 0.96
>> AT2G18760.1 | Symbols: CHR8 | CHR8 (chromatin remodeling 8); ATP binding / DNA binding / helicase/ nucleic acid bind
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 52.8 0.0 7e-17 7.1e-17 2 78 .] 762 840 .. 761 840 .. 0.96
>> AT1G05490.1 | Symbols: chr31 | chr31 (chromatin remodeling 31); ATP binding / DNA binding / helicase/ nucleic acid b
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.0 0.0 4.2 4.3 33 52 .. 546 565 .. 515 574 .. 0.77
2 ! 51.1 0.0 2.3e-16 2.4e-16 5 78 .] 1242 1318 .. 1238 1318 .. 0.96
>> AT3G06400.1 | Symbols: CHR11 | CHR11 (CHROMATIN-REMODELING PROTEIN 11); ATP binding / DNA binding / DNA-dependent AT
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 52.2 0.0 1e-16 1.1e-16 2 78 .] 525 604 .. 524 604 .. 0.96
>> AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 (INO80 ORTHOLOG); ATP binding / DNA binding / helicase/ nucleic acid b
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 51.6 0.0 1.6e-16 1.6e-16 2 78 .] 1241 1319 .. 1240 1319 .. 0.96
>> AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | ETL1; ATP binding / DNA binding / helicase/ nucleic acid binding | chr2:
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 51.6 0.1 1.7e-16 1.7e-16 6 78 .] 627 701 .. 622 701 .. 0.95
>> AT1G08600.1 | Symbols: ATRX, CHR20 | ATRX; ATP binding / DNA binding / helicase/ nucleic acid binding | chr1:2724562
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.8 0.0 7.7 7.9 41 54 .. 321 334 .. 318 335 .. 0.88
2 ! 49.6 0.0 7.1e-16 7.3e-16 6 78 .] 1166 1242 .. 1162 1242 .. 0.95
>> AT5G63950.1 | Symbols: CHR24 | CHR24 (chromatin remodeling 24); ATP binding / DNA binding / helicase/ nucleic acid b
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 51.0 0.0 2.5e-16 2.6e-16 3 78 .] 768 845 .. 766 845 .. 0.97
>> AT5G43530.1 | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-c
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 49.9 0.0 5.4e-16 5.6e-16 3 78 .] 1147 1224 .. 1146 1224 .. 0.95
>> AT4G31900.1 | Symbols: | chromatin remodeling factor, putative | chr4:15431528-15438443 FORWARD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 49.7 0.0 6.5e-16 6.6e-16 4 78 .] 561 638 .. 558 638 .. 0.95
>> AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | PKL (PICKLE); ATPase/ DNA binding / DNA helicase | chr2:10714411
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 49.9 0.0 5.7e-16 5.8e-16 3 78 .] 631 709 .. 629 709 .. 0.94
>> AT2G28290.1 | Symbols: SYD, CHR3 | SYD (SPLAYED); ATPase/ chromatin binding | chr2:12056771-12072950 FORWARD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 48.9 0.0 1.1e-15 1.2e-15 2 78 .] 1108 1187 .. 1107 1187 .. 0.97
>> AT1G48310.1 | Symbols: CHR18, CHA18 | CHR18; ATP binding / DNA binding / helicase/ nucleic acid binding | chr1:17848
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 49.3 0.0 8.5e-16 8.8e-16 1 78 [] 502 581 .. 502 581 .. 0.97
>> AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REMODELING 4); ATP binding / DNA binding / chromatin binding / helicas
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 47.4 0.0 3.4e-15 3.5e-15 12 78 .] 1051 1119 .. 1043 1119 .. 0.95
>> AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription regulatory protein SNF2, putative | chr2:18923304-1893
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 45.5 0.0 1.3e-14 1.3e-14 6 78 .] 1347 1422 .. 1342 1422 .. 0.93
>> AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 46.3 0.0 7.7e-15 7.8e-15 3 78 .] 1091 1168 .. 1089 1168 .. 0.96
>> AT5G22750.1 | Symbols: RAD5 | RAD5; ATP binding / ATP-dependent helicase/ DNA binding / helicase/ hydrolase, acting
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 46.0 0.0 9.1e-15 9.4e-15 3 78 .] 899 976 .. 898 976 .. 0.96
>> AT2G44980.2 | Symbols: | transcription regulatory protein SNF2, putative | chr2:18552343-18556669 REVERSE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 45.7 0.0 1.2e-14 1.2e-14 2 78 .] 412 501 .. 411 501 .. 0.97
>> AT3G24340.1 | Symbols: chr40 | chr40 (chromatin remodeling 40); ATP binding / DNA binding / helicase/ nucleic acid b
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 44.9 0.0 2e-14 2e-14 9 78 .] 974 1046 .. 970 1046 .. 0.94
>> AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-c
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 44.9 0.0 2.1e-14 2.1e-14 5 78 .] 914 989 .. 910 989 .. 0.96
>> AT3G19210.1 | Symbols: ATRAD54, CHR25 | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54); ATP binding / DNA binding / helicase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 44.6 0.0 2.5e-14 2.5e-14 2 78 .] 570 649 .. 569 649 .. 0.96
>> AT5G05130.1 | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-c
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 43.7 0.0 4.9e-14 5e-14 3 78 .] 726 805 .. 725 805 .. 0.96
>> AT1G61140.1 | Symbols: EDA16 | EDA16 (embryo sac development arrest 16); ATP binding / DNA binding / helicase/ nucle
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 42.8 0.0 9.2e-14 9.4e-14 5 78 .] 1145 1220 .. 1141 1220 .. 0.94
>> AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-c
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 42.3 0.0 1.3e-13 1.4e-13 3 78 .] 846 923 .. 844 923 .. 0.95
>> AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | RGD3 (ROOT GROWTH DEFECTIVE 3); ATP binding / DNA bindin
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 38.5 0.0 1.9e-12 2e-12 7 78 .] 1850 1923 .. 1846 1923 .. 0.95
>> AT1G02670.1 | Symbols: | DNA repair protein, putative | chr1:576046-580299 FORWARD
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 38.7 0.0 1.7e-12 1.7e-12 3 78 .] 545 622 .. 543 622 .. 0.95
>> AT1G05120.1 | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-c
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 38.0 0.0 2.9e-12 3e-12 3 78 .] 700 777 .. 698 777 .. 0.97
>> AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1); ATP binding / DNA bin
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.0 0.0 1.2e-11 1.2e-11 6 78 .] 738 812 .. 734 812 .. 0.93
>> AT5G20420.1 | Symbols: CHR42 | CHR42 (chromatin remodeling 42); ATP binding / DNA binding / helicase/ nucleic acid b
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 35.4 0.0 1.9e-11 1.9e-11 5 78 .] 1105 1181 .. 1101 1181 .. 0.92
>> AT3G42670.1 | Symbols: CHR38, CLSY | CHR38 (CHROMATIN REMODELING 38); ATP binding / DNA binding / helicase/ nucleic
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.8 0.0 7.4 7.6 29 49 .. 61 81 .. 57 84 .. 0.86
2 ! 33.1 0.0 9.5e-11 9.7e-11 5 78 .] 1099 1175 .. 1095 1175 .. 0.89
>> AT5G07810.1 | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease dom
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 33.3 0.0 8.3e-11 8.5e-11 2 78 .] 573 651 .. 572 651 .. 0.93
>> AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-c
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 32.5 0.0 1.5e-10 1.5e-10 34 78 .] 503 552 .. 483 552 .. 0.86
>> AT2G21450.1 | Symbols: CHR34 | CHR34 (chromatin remodeling 34); ATP binding / DNA binding / helicase/ nucleic acid b
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.4 0.0 1.4e-09 1.5e-09 9 78 .] 667 738 .. 662 738 .. 0.93
>> AT3G54460.1 | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.8 0.0 3.9e-08 4e-08 2 78 .] 1212 1289 .. 1211 1289 .. 0.94
>> AT2G40770.1 | Symbols: | ATP binding / DNA binding / helicase/ nucleic acid binding / protein binding / zinc ion bi
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.5 0.0 2e-07 2e-07 29 78 .] 1492 1557 .. 1470 1557 .. 0.76
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (78 nodes)
Target sequences: 42 (51779 residues)
Passed MSV filter: 41 (0.97619); expected 0.8 (0.02)
Passed bias filter: 41 (0.97619); expected 0.8 (0.02)
Passed Vit filter: 41 (0.97619); expected 0.0 (0.001)
Passed Fwd filter: 41 (0.97619); expected 0.0 (1e-05)
Initial search space (Z): 42 [actual number of targets]
Domain search space (domZ): 41 [number of targets reported over threshold]
# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.06
# Mc/sec: 67.31
//