[GENERAL]
description = C. elegans Extra Annotations
db_adaptor = Bio::DB::SeqFeature::Store
db_args = -adaptor memory
-dir "/var/www/gbrowse2/databases/elegans_extra"
# options
drag and drop = 1
balloon tips = 1
titles are balloons = 1
plugins = GFFDumper
das mapmaster = SELF
# list of tracks to turn on by default
default features = REPEAT TSA DA EXP
# examples to show in the introduction
examples = C01F4
# a footer
footer = <hr>
<table width="100%">
<TR>
<TD align="LEFT" class="databody">
For the source code for this browser, see the <a href="http://www.gmod.org">
Generic Model Organism Database Project.</a> For other questions, send
mail to <a href="mailto:lstein@cshl.org">lstein@cshl.org</a>.
</TD>
</TR>
</table>
<hr>
<pre>$Id: elegans_extra.conf,v 1.1 2008-10-22 18:54:40 lstein Exp $</pre>
# Various places where you can insert your own HTML -- see configuration docs
html1 =
html2 =
html3 =
html4 =
html5 =
html6 =
# what image widths to offer
image widths = 450 640 800 1024
# default width of detailed view (pixels)
default width = 800
# Web site configuration info
stylesheet = /gbrowse/gbrowse.css
buttons = /gbrowse/images/buttons
tmpimages = /gbrowse/tmp
# max and default segment sizes for detailed view
max segment = 50000
default segment = 5000
# zoom levels
zoom levels = 100 200 1000 2000 5000 10000 20000 40000
# colors of the overview, detailed map and key
overview bgcolor = lightgrey
detailed bgcolor = lightgoldenrodyellow
key bgcolor = beige
########################
# Default glyph settings
########################
[TRACK DEFAULTS]
glyph = generic
height = 10
bgcolor = lightgrey
fgcolor = black
font2color = blue
label density = 25
bump density = 100
# where to link to when user clicks in detailed view
link = AUTO
################## TRACK CONFIGURATION ####################
# the remainder of the sections configure individual tracks
###########################################################
# for the file elegans_repeats.gff
[REPEAT]
feature = repeat
bgcolor = white
das category = repeat
key = Complex repeats
[TSA]
feature = trans-splice_acceptor_site
glyph = diamond
bgcolor = red
das category = transcription
key = Trans-splice Acceptors
[DA]
feature = deletion
glyph = span
das category = variation
key = Gene knockouts
# for the file elegans_expression.gff
[EXP]
feature = microarray_oligo
bgcolor = orange
height = 4
das category = experimental
key = Microarray expression probe