The Perl Toolchain Summit needs more sponsors. If your company depends on Perl, please support this very important event.

<p>

<table width="100%">
  <tr class="searchtitle">
    <th><a href="#selecting">¿ï¾Ü°Ï°ì</a></th>
    <th><a href="#navigation">·§Äý°Ï</a></th>
    <th><a href="#detail">²ÓÄý°Ï</a></th>
    <th><a href="#upload">¥[¤JµùÄÀ</a></th>
  </tr>
</table>


<h1>³q¥Î°ò¦]²Õ¬yÄý¾¹¡R´¶³qÀ°§U</h1>

¤U­±¬O°ò¦]²Õ¬yÄý¾¹ªº´¶³qÀ°§U¡C¬yÄý¾¹ªº¨t²ÎºÞ²z­ûÀ³¸Ó®Ú¾Ú¨ãÅ鱡ªp¥[¥H­×§ï¡C

<h2><a name="selecting">¿ï¾Ü°ò¦]²Õªº¤@­Ó°Ï°ì</a></h2>

<p>

<img src="images/help/landmark.gif" align="RIGHT">

­Y­n¿ï¾Ü°ò¦]²Õªº¤@­Ó°Ï°ì¶i¦æÆ[¹î¡M¦b¡§¼Ð»x©Î°Ï°ì¡¨ªÅ®æ¸Ì¿é¤J¨ä¦WºÙ¡C³Q»{¦Pªº¦WºÙ¥Ñ¨t²ÎºÞ²z­û¨M©w¡M¦ý³q±`¥]¬A¥H¤U´XºØ±¡ªp¡R

<dl>
  <dt><b>¬V¦âÅé¦W</b>
  <dd>¹ï¥H³Q²Õ¸Ë¦¨¬V¦âÅ骺°ò¦]²Õ¡M §A¥i¥H¿é¤J¬V¦âÅé¦W¡C¬V¦âÅé¦W±Ä¥Î¸Óª«ºØªº¶Ç²Î©R¦W¡C¨Ò¦p¡M <i>½uÂÎ(C. elegans)</i> ¬V¦âÅé±Ä¥Îù°¨¼Æ¦r¡M¤ñ¦p III¡M<i>ªGÃÇ(D. melanogaster)</i> ±Ä¥Î¬V¦âÅéÁu¦p 2L ©M 2R¡M¦Ó<i>¤H(H. sapiens)</i> «h±Ä¥Îªü©Ô§B¼Æ¦r¦p9¡C
      <p>
  <dt><b>°ò¦]¦W</b>
  <dd>§A¥i¿é¤J¸Óª«ºØªº¼Ð·Ç©R¦W¡C
      <p>
  <dt><b>contig ©Î§J¶©¦W</b>
  <dd>§A¥i¿é¤J¤@­Óµ²ºc¼Ð»x¡M ¤ñ¦p¤@­Ócosmid, BAC ©ÎªÌ contig.
      <p>
  <dt><b>¼Æ¦C¸¹</b>
  <dd>§A¥i¿é¤J¤@­Ó°ò¦]®w(GenBank) ©Î EMBL¼Æ¦C¸¹¡C
      <p>
  <dt><b>³J¥Õ½è¦W¡M¤Þª«¦W¡M¾\Ū®Ø¬[½s¸¹(ORF IDs)¡M§@ªÌ¦Wµ¥¡C</b>
  <dd>¨t²ÎºÞ²z­û¥i¥H³W©w¨Ï¥Î¨ä¥Lªº¦WºÙ¡C°Ñ¾\¬yÄý¾¹ºô­¶¤W³¡ªº½d¨Ò¡C
</dl>

<h3>·§Äý°Ï©M²ÓÄý°Ï</h3>

<p>

¦pªG¦b¼Æ¾Ú®w¸Ìµo²{§A©Ò´M§äªº¼Ð»x¡M¬yÄý¾¹±N·|Åã¥Ü¥¦©Ò¯¸¦íªº°ò¦]²Õ¡Cµ²ªG¥H¨âºØ¹Ï¹³¤è¦¡Åã¥Ü¡R

<p>

<center>
<img src="images/help/overview+detail.gif" align="CENTER">
</center>

<p>

<dl>
  <dt><b>·§Äý°Ï</b>
  <dd>³o­Óª©°ÏÅã¥Ü°ò¦]²Õªº¤W¤U§Ç¦CÃö«Y¡M³q±`¬O¾ã±ø¬V¦âÅé©ÎªÌ¬O¸g¹L²Õ¸Ëªº¤j¤ù§Ç¦C¦p scaffold ©Î contig¡C¦b¨t²ÎºÞ²z­ûªº³]©w¤U¡M¤@¨Ç­«­nªº¼Ð»x¡M¦p¤@¨Ç±`¨£ªº¿ò¶Ç¼Ð»x(genetic markers) ©Î²Ó­M¿ò¶Ç±a(cytogenetic bands)¤]¥i¥H©ñ¦b³o¤@ª©°Ï¡C¬õ¦âªø¤è§Î«ü¥Ü¦¹°Ï¦b²ÓÄý°Ï¸Ô²ÓÅã¥Ü¡C¬õ¦âªø¤è§Î«Ü¤p®É·|¬Ý¤W¥h¹³¤@±ø½u¡C
      <p>
  <dt><b>²ÓÄý°Ï</b>
  <dd>³o­Óª©°Ï©ñ¤jÅã¥Ü·§Äý°Ï¬õ¦âªø¤è§Î¤ºªº°ò¦]²Õ¡C²ÓÄý°Ï¥]¬A¤@±ø©Î´X±øµùÄÀ¼Æ¾Ú©M¨ä¥L¯S©º¡CÃö©ó²ÓÄý°Ï¡M ¤U­±¦³¸ÔºÉªº´y­z¡C      
</dl>

<p>

¦pªG§A¿é¤Jªº¼Ð»x¨S¦³§ä¨ì¡M¬yÄý¾¹·|Åã¥Ü¤@±ø«H®§¡C

<h3>½T©w¼Ð»xªºÃþ«¬</h3>

<p>

¨t²ÎºÞ²z­û¥i¥H³]©w¼Ð»xªºÃþ«¬¡M ¨Ï±o¼Ð»x¥²¶·¨ã³Æ¦U¦Ûªº®æ¦¡¡M ¦p¨Ï¥Î<i>Ãþ«¬¡R¼Ð»x</i>.  ¨Ò¦p¡M­n±q<i>½uÂÎ(C. elegans)</i>¼Æ¾Ú®w¸Ì´M§äPCR²£ª«sjj_K08A8.1¡M§A±o´M§ä<b>PCR_Product:sjj_K08A8.1</b>¡C

<p>

¤@¥¹¦³¦WºÙ½Ä¬ð¡M¤ñ¦p contig ©M°ò¦]³£ºÙ¬°c23¡M §A¥i¥H¥ÎÃþ«¬¨Ó§@¿ï¾Ü¡C

<p>

<!-- #include-classes -->

<h3>Æ[¹î¼Ð»x¶g³òªººë²Ó°Ï°ì</h3>

<p>

§A¥i¥H§Q¥Î³oºØ°Oªk<i>¼Ð»x¡R°_©l..²×¤î</i>¨ÓÆ[¹î¼Ð»x¶g³òªººë²Ó°Ï°ì¡C¨ä¤¤ <i>°_©l</i> ©M <i>²×¤î</i> ¬O¼Æ¦C¬Û¹ï©ó¼Ð»xªº°_©l©M²×¤îÂI¡C¯S©ºªº°_©lÂI¬O¦ì¸m1( position 1)¡C¹ï©ó½ÆÂøªº¯S©º¡M¦p¦h­Ó°ò¦]¡M°_©lÂI¥Ñ¼Æ¾Ú®w¨t²ÎºÞ²z­û©w¸q¡C¨Ò¦p¡M <i>½uÂÎ(C. elegans)</i> ªº¦ì¸m1( position 1)¬O¦ì©óCDS°_©l¦ì¸mªºAUG¡C³o¼Ë¡M­nÆ[¹îmek-1¤W´å100½p°ò©M¤U´å500½p°òªº°Ï°ì¡M§A±o¿é¤J<i>mek-1:-99..500</i>¡C

<p>

³oºØ°Oªk¤£¦ý¾A¥Î¤_¥¿Ã쪺¯S©º¡M¤]¥i¥H¥Î¤_°ÆÃì¡C§¤¼Ð¥Ã»·¬O¬Û¹ï©ó¼Ð»x¥»¨­¡C

<p>

¬°¤F±o¨ì¤@­Ó¦Xªkªº¯S©º¡M ¥i¥[¤J¦¹¯S©ºªºÃþ«¬¡M ¦p <b>PCR_Product:sjj_K08A8.1:-500..500</b> (½Ðª`·N³o­Ó¨Ò¤l¥u¾A¤_½uÂÎ[C. elegans] ¼Æ¾Ú®w).

<h3>ÃöÁä®t¬d¸ß</h3>

<p>

¦pªG¦~¿é¤J¡§¼Ð»x©Î°Ï°ì¡¨ªÅ®æªºµü¤£ÄÝ©ó©Ò»{ÃѪº¼Ð»x¡M¥¦«K³Q¥H¤å¥»¬d¸ßªº¤è¦¡·j´M¾ã­Ó¼Æ¾Ú®w¡C³o¼Ë·|§ä¨ì¤@¨Ç¸}µù¡M»¡©ú¥H¤Î¨ä¥L¯S©º¡C°_¨M¤_¼Æ¾Ú®wªº³]¸m¡M §A¦³¥i§ä¨ì°ò¦]¦W¡M°ò¦]¥\¯à¡M§@ªÌ¦W¡M©ÎªÌ¤åÄm¡C

<p>

¦pªG¦¨¥\ªº¸Ü¡M¬yÄý¾¹·|´£¨Ñµ¹§A¤@¨t¦C¼Ð»x©M»¡©ú¡CµM«á§A¥i¿ï¾Ü¤@­Ó¨ÓÆ[¬d¡C§A¥i¸ÕÆØÁä¤J¡§kinase¡¨¤@µü ¤_¡§¼Ð»x©Î°Ï°ì¡¨ªÅ®æ¤º¡C

<hr>

<h2><a name="navigation">¬yÄý</a></h2>

<img src="images/help/navbar.gif" align="RIGHT">

<p>

¤@¥¹¤@­Ó°Ï°ì³QÅã¥Ü¥X¨Ó¡M§A¥i¥H¥Î¤@¨t¦Cªº¤èªk¬yÄý¡R

<dl>
  <dt><b>¥Î &lt;&lt;, &lt;, &gt; ©M &gt;&gt«ö¶s¥ª¥k¨÷°Ê</b>
  <dd>¥i§Q¥Î³o¨Ç¦ì©ó¡§¨÷°Ê/ÁY©ñ¡¨³¡¥÷ªº«ö¶s¥ª¥k¨÷°Ê²ÓÄý°Ï¡C
      <b>&lt;&lt;</b> ©M <b>&gt;&gt;</b> «ö¶sÂà°Ê¾ã«Ì¡M¦Ó <b>&lt;</b> ©M <b>&gt;</b> Âà°Ê¥b«Ì¡C
      <p>
  <dt><b>§Q¥Î¡¨Åã¥ÜXXXKbp" µæ³æ¶i¦æÁY©ñ</b>
  <dd>§Q¥Î¡§¨÷°Ê/ÁY©ñ¡¨³¡¥÷¤¤¶¡ªºµæ³æ§ïÅÜÁY©ñ¤ô¥­¡C µæ³æ¦W«ü¥Ü±N¦b²ÓÄý°ÏÅã¥Üªº½p°ò¹ï¼Æ¡C¨Ò¦p¡M¿ï¾Ü¡§100 Kbp¡¨³]©w²ÓÄý°ÏªºÅã¥Ü°Ï¬°100 Kbp¼e¡C
      <p>
  <dt><b>¥Î¡§-¡¨©M¡§+¡¨²Ó½ÕÁY©ñ¤ô¥­</b>
  <dd>«ö<b>-</b> ©M <b>+</b> §ïÅÜÁY©ñ¤ô¥­ (³q±`¨C¦¸10-20%, ®Ú¾Ú¬yÄý¾¹ªº³]©w¦Ó©w)¡C
      <p>
  <dt><img src="images/help/detail_scale.gif" align="RIGHT">
      <b>½Õ¸`²ÓÄý°Ï©~¤¤¦ì¸m</b>
  <dd>«ö²ÓÄý°Ï¤W­±ªº¼Ð¤Ø¥i¨Ï³Q«öªº¦ìÂI©~¤¤¡C³o¬O¶i¦æ²Ó½Õ®É§Ö³t¦Ó¤S²³æªº¤èªk¡C
      <p>
  <dt><b>Àò¨ú¯S©ºªº«H®§</b>
  <dd>«ö¤U²ÓÄý°Ï¯S©º·|Ãì±µ¨ì¥t¥~¤@­Ó¥]¬A§ó¦h«H®§ªººô­¶¡C³o­Óºô­¶¥i¯à¦b¥»¬yÄý¾¹¤W¡M¤]¥i¯à¦b¥~³¡ºô¯¸¡C  
    <p>
  <dt><img src="images/help/overview.gif" align="RIGHT">
      <b>±q·§Äý°Ï¸õ¨ì¤@­Ó·s°Ï</b>
  <dd>«ö¤U·§Äý°Ï°¨¤W¥i¥H¸õ¨ì¤@­Ó¬ÛÃöªº·s°Ï¡C
</dl>

<br clear="all">

<hr>

<h2><a name="detail"></a>²ÓÄý°Ï</h2>

<p>

²ÓÄý°Ï¥]¬A¤@¨t¦C¤ô¥­±Æ¦Cªº¡§¯S©º¼Æ¾Ú(distinct tracks)¡¨¡C¨C­Ó¯S©º¼Æ¾Ú¹ïÀ³¤_¤@Ãþ°ò¦]²Õ¯S©º¡M¨Ã¥Ñ¯S²§ªº¹Ï§Î©MÃC¦âªí¥Ü¡C

<p>

<center>
<img src="images/help/detail.gif" align="CENTER">
</center>

<p>

¯S©º¼Æ¾Úªºµù¸ÑÅã¥Ü¤_²ÓÄý°Ïªº¤UºÝ¡C­n±o¨ì¦³Ãö¯S©º¼Æ¾Ú§ó¦hªº«H®§¡M«ö¦ì©ó¡§¬d¸ß³]¸m¡¨(¨£¤U¤å)¡C

<h3>¥Î¤á¤Æ²ÓÄý°Ï</h3>

§A¥i¥Î¦hºØ¤èªk¥Î¤á¤Æ²ÓÄý°Ï¡R

<p>

<dl>
  <dt><b>¦b¡§¬d¸ß³]¸m¡¨°Ï¥´¶}©MÃö³¬¯S©º¼Æ¾Ú</b>
  <dd><img src="images/help/search+settings.gif" border="1"><p>
      ¡§¬d¸ß³]¸m¡¨°Ï¥]¬A¤@¨t¦C¡§¿ï¾Ü²°¡¨(checkboxes). ¨C­Ó¿ï¾Ü²°¹ïÀ³¤_¤@­Ó¯S©º¼Æ¾Ú¡CÂIÀ»¿ï¾Ü²°¥k­±ªº¼Ð°O¥iÅã¥Ü¦³Ãö³o­Ó¯S©º¼Æ¾Ú§ó¦hªº²Ó¸`¡M¤ñ¦p¥Î¤_²£¥Í¥¦ªººâªk¡M§@ªÌ¡M¥H¤Î¤åÄm¤Þ¥Î¡C
      <p>
  <dt><b>§Q¥Î¡§³]©w¯S©º¼Æ¾Ú¿ï¶µ¡¨§ïÅܯS©º¼Æ¾Úªº©Ê½è</b>
  <dd><img src="images/help/track+settings.gif" border="1"><p>
      ³o¼Ë·|¼u¥X¤@­Ó·sªºµ¡¤f¡MÅã¥Ü¨C­Ó¯S©º¼Æ¾Úªº³]¸m¡C¥´¶}©ÎÃö³¬¡§Åã¥Ü¡¨°Ïªº¿ï¾Ü²°¡M·|¥´¶}©ÎÃö³¬¯S©º¼Æ¾Ú (»P¦b¡§¬d¸ß³]¸m¡¨°Ï¸Ìªº¿ï¾Ü²°¬Û¦P)¡C§ïÅÜ¡§®æ¦¡¡¨¸Ìªº¼u¥Xµæ³æ¥i¥H§ïÅܬÛÀ³¯S©º¼Æ¾ÚªºÅã¥Ü¡C¿ï¶µ¦³¡R <i>ºòÁY</i>¡M­¢¨Ï©Ò¦³ªº¯S©º¼Æ¾Ú¦¨¬°¤@±ø½u¡M¤£Åã¥Ü¼Ð°O©M´y­z¡Q <i>ÂX®i</i>, ¾É­P©Ò¦³ªº¯S©º¼Æ¾Ú¸I¨ì¤@°_¦ý¤£­«­¡¡Q¥H¤Î<i>ÂX®i ©M ¼Ð°O</i>, ­P¨Ï©Ò¦³ªº¯S©º¼Æ¾Ú¼Ð°O¤W¥¦­Ìªº¦W¦r©M²µuªº´y­z¡C¯Ê·l¬°<i>¦Û°Ê</i>¡M ¦b¯S©ººA¦h®É¿ï¾ÜºòÁY¡M¦Ó¦bªÅ¶¡¨¬°÷®É±Ä¥ÎÂX®i¤è¦¡¡C¬yÄý¾¹·|°O¦í§A©Ò§@ªº¥ô¦ó§ïÅÜ¡C¦pªG¦~º¡·N·í«eªº¿ï¶µ¡M«ö <b>±µ¨üÅܤƩMªð¦^...</b> ¡C
      <p>
  <dt><b>§Q¥Î¡§³]©w¯S©º¼Æ¾Ú¿ï¶µ¡¨§ïÅܯS©º¼Æ¾Úªº¶¶§Ç</b>
  <dd>¯S©º¼Æ¾Ú¿ï¶µµ¡¤f¸Ì³Ì«á¤@ÄæÅý§A§ïÅܯS©º¼Æ¾Úªº¶¶§Ç¡C¤W¼uµæ³æ¥H¦r¥À¶¶§Ç¦C¥X©Ò¦³¯S©º¡C¿ï¾Ü¥§·Q­nªº¯S©º¡C µ¡¤f·|¦Û°ÊÅã¥Ü§ïÅܫ᪺±¡ªp¡C§_«h¡M¿ï¾Ü¡§­«Åã¥Ü¡¨ÁäÆ[¹î¡C
      
</dl>

<hr>

<h2><a name="upload">¤W¸ü§A¦Û¤v©Î§O¤HªºµùÄÀ</a></h2>

<p>

¦¹¬yÄý¾¹¤ä«ù¡§²Ä¤TªÌ(third party)¡¨µùÄÀ¡C

<h3>¤W¸ü§A¦Û¤vªºµùÄÀ</h3>

<img src="images/help/upload.gif">

<p>

­nÆ[¹î§A¦Û¤vªºµùÄÀ¡M«ö¤Uºô­¶¤UºÝ¤å¥ó¤W¸ü°Ï¤ºªº<b>¬yÄý(Browse...)</b> ¶s¡C³o¼Ë·|¥X²{¤@­Ó¥]¬A§AªºµùÄÀªº¤å¥»¤å¥ó¡C°Ñ¾\ <a href="$GBROWSE?help=annotation" target="_new">µùÄÀ®æ¦¡À°§U</a>¡C ¥¦ÄÄ©ú¤F¦p¦ó¥Í¦¨³o­Ó¤å¥ó¡C

<p>

¤@¥¹¤W¸ü¡M¥]¬A³o¨ÇµùÄÀªº¯S©º¼Æ¾Ú·|Åã¥Ü¤_²ÓÄý°Ï¡M»P¨ä¦o¤º¦bªº¯S©º¼Æ¾Ú¨S¦³°Ï§O¡C¥t¥~¡M¤@¨Ç·s«ö¶s¦p<b>½s¿è</b>, <b>§R°£</b>©M <b>¤U¸ü</b> ¤]·|¥X²{¦b¤å¥ó¤U¸ü°Ï¡C¥¿¦p¨ä¦WºÙ©Ò«ü¡M³o¨Ç«ö¶sÅý§A¯à½s¿è¤W¸ü¤å¥ó¡M¤U¸ü¡M©ÎªÌ§¹¥þ§R°£¡C

<p>

<img src="images/help/upload+edit.gif">

<p>

¤W¸ü¤é´ÁÅã¥Ü¤_¦WºÙ®ÇÃä¡C¦pªGµùÄÀ¼Æ¶q¤£¬O¤j¦h¡M ³q¥Î°ò¦]²Õ¬yÄý¾¹(GBrowse)·|¥Í¦¨Ãì±µ¥H«K§A¬yÄý¡C

<p>

§A¥i¥H¤W¸ü«Ü¦h¤å¥ó¡M¦ý¬O¡M¦pªG¤W¸ü¤å¥ó¤Ó¦h¡M¬yÄý¾¹ªº³t«×·|´îºC¡C

<h3>Æ[¹î¡§²Ä¤TªÌ¡¨µùÄÀ</h3>>

<p>

¬°¤FÆ[¹î¡§²Ä¤TªÌ¡¨µùÄÀ¡MµùÄÀ¥²¶·¦ì©ó¤@­Ó¯à±o¨ìªººô­¶¡M¦Ó§A¥²¶·ª¾¹Dºô§}¡C
<p>

<img src="images/help/upload+remote.gif">

<p>

¦b¬yÄý¾¹µ¡¤f¤UºÝ¦³¤@­Ó¤å¦r°Ï¡§¿é¤J»·µ{µùÄÀºô§}¡¨¡C¿é¤Jºô§}¨Ã«ö¡§§ó·sºô§}¡¨¡C¨t²Î«K·|¸Õ¹Ï¤W¸ü¡C­Y¦¨¥\¡M¼Æ¾Ú·|Åã¥Ü¥X¡C§_«h¡M§A·|±o¨ì¥X¿ù«H®§¡C

<p>

§A¥i¥H¥[¤J«Ü¦hªººô§}¡C¦p·Q§R¥h¬Y­Óºô§}¡M²µu¦a¥h±¼¥L¡M¨Ã«ö¡§§ó·sºô§}¡¨¡C

<hr>

<H2><A NAME="bugs"></A>³n¥ó°ÝÃD</H2>

<P>¤£·|¨Ò¥~¡M³o­Ó³n¥ó¤]¦³°ÝÃD( bugs). ½Ð±N§A¸I¨ìªº°ÝÃD¥H¤Î©Ò¦³¬ÛÃöªº«H®§³ø§iµ¹§@ªÌ¡C</P>

<P>
<HR>
<H1><A NAME="author">§@ªÌ</A></H1>
<P>Lincoln Stein &lt;<A HREF="mailto:lstein@cshl.org">lstein@cshl.org</A>&gt;</P>