This directory contains various individuals' contributions to the
gbrowse project, as well as some optional packages.
Coverage Marco Valtas' plugin for displaying clone coverage.
GeneFinder A plugin for Phil Green's GeneFinder Program
TextDumper Don Jackson's plugin for dumping out current region of
interest as a tab-delimited table.
bulk_load_win.pl, pg_bulk_load_gff.PLS
Early versions of windows and PostGres loaders.
install_macosx
Scripts that streamline the installation of GBrowse
and its dependencies on Mac OS X. Contributed by Todd
Harris.
import_ncbi_mv_hs.pl
Scott Saccone's script for importing NCBI gene builds
into GFF format.
blast2gff.pl
Justin Reese's script for formatting BLAST output into
loadable GFF files.
conf_files Configuration files for:
01.yeast.conf yeast data
02.wormbase.conf c. elegans data
03.fly.conf fly data
04.human.conf human data
05.embl.conf data automatically loaded from Genbank/EMBL
06.biosql.conf biosql database schema
07.chado.conf chado database schema
08.genbank.conf data manually loaded from Genbank/EMBL