#!/usr/perl/perl580/bin/perl -w
use Algorithm::Cluster qw/kcluster/;
use strict;
my $weight1 = [ 1,1 ];
my $data1 = [
[ 1.1, 1.2 ],
[ 1.4, 1.3 ],
[ 1.1, 1.5 ],
[ 2.0, 1.5 ],
[ 1.7, 1.9 ],
[ 1.7, 1.9 ],
[ 5.7, 5.9 ],
[ 5.7, 5.9 ],
[ 3.1, 3.3 ],
[ 5.4, 5.3 ],
[ 5.1, 5.5 ],
[ 5.0, 5.5 ],
[ 5.1, 5.2 ],
];
my $mask1 = [
[ 1, 1 ],
[ 1, 1 ],
[ 1, 1 ],
[ 1, 1 ],
[ 1, 1 ],
[ 1, 1 ],
[ 1, 1 ],
[ 1, 1 ],
[ 1, 1 ],
[ 1, 1 ],
[ 1, 1 ],
[ 1, 1 ],
[ 1, 1 ],
];
my $data2 = [
[ 1.1, 2.2, 3.3, 4.4, 5.5, ],
[ 3.1, 3.2, 1.3, 2.4, 1.5, ],
[ 4.1, 2.2, 0.3, 5.4, 0.5, ],
[ 12.1, 2.0, 0.0, 5.0, 0.0, ],
];
my $mask2 = [
[ 1, 1, 1, 1, 1, ],
[ 1, 1, 1, 1, 1, ],
[ 1, 1, 1, 1, 1, ],
[ 1, 1, 1, 1, 1, ],
];
my $weight2 = [ 1,1,1,1,1 ];
my %params = (
nclusters => 3,
transpose => 0,
npass => 100,
method => 'a',
dist => 'e',
);
my ($clusters, $error, $found);
my ($i);
$i=0;
($clusters, $error, $found) = kcluster(
%params,
data => $data1,
mask => $mask1,
weight => $weight1,
);
printf("\n");
printf("Clustering first data set:\n\n");
$i=0;
foreach(@{$clusters}) {
printf("Gene %2d belongs to cluster %2d\n",$i++,$_);
}
printf("\n");
printf("Within-cluster sum of distances is %f\n", $error);
printf("\n");
printf("Clustering second data set:\n\n");
($clusters, $error, $found) = kcluster(
%params,
data => $data2,
mask => $mask2,
weight => $weight2,
);
$i=0;
foreach(@{$clusters}) {
printf("Gene %2d belongs to cluster %2d\n",$i++,$_);
}
printf("\n");
printf("Within-cluster sum of distances is %f\n", $error);
printf("\n");
__END__