use 5.006;
use strict;
use warnings;
use ExtUtils::MakeMaker;
WriteMakefile(
NAME => 'Bio::KBase',
AUTHOR => q{Robert Olson <olson@mcs.anl.gov>},
VERSION => '0.06',
ABSTRACT => 'The KBase perl API.',
($ExtUtils::MakeMaker::VERSION >= 6.3002
? ('LICENSE'=> 'unrestricted')
: ()),
PL_FILES => {},
EXE_FILES => [
'er_scripts/all_entities_AlignmentTree',
'er_scripts/all_entities_AlleleFrequency',
'er_scripts/all_entities_Annotation',
'er_scripts/all_entities_Assay',
'er_scripts/all_entities_AtomicRegulon',
'er_scripts/all_entities_Attribute',
'er_scripts/all_entities_Biomass',
'er_scripts/all_entities_BiomassCompound',
'er_scripts/all_entities_Compartment',
'er_scripts/all_entities_Complex',
'er_scripts/all_entities_Compound',
'er_scripts/all_entities_Contig',
'er_scripts/all_entities_ContigChunk',
'er_scripts/all_entities_ContigSequence',
'er_scripts/all_entities_CoregulatedSet',
'er_scripts/all_entities_Diagram',
'er_scripts/all_entities_EcNumber',
'er_scripts/all_entities_Experiment',
'er_scripts/all_entities_Family',
'er_scripts/all_entities_Feature',
'er_scripts/all_entities_Genome',
'er_scripts/all_entities_Identifier',
'er_scripts/all_entities_Locality',
'er_scripts/all_entities_Media',
'er_scripts/all_entities_Model',
'er_scripts/all_entities_ModelCompartment',
'er_scripts/all_entities_ObservationalUnit',
'er_scripts/all_entities_OTU',
'er_scripts/all_entities_Pairing',
'er_scripts/all_entities_PairSet',
'er_scripts/all_entities_ProbeSet',
'er_scripts/all_entities_ProteinSequence',
'er_scripts/all_entities_Publication',
'er_scripts/all_entities_Reaction',
'er_scripts/all_entities_ReactionRule',
'er_scripts/all_entities_Reagent',
'er_scripts/all_entities_Requirement',
'er_scripts/all_entities_Role',
'er_scripts/all_entities_Scenario',
'er_scripts/all_entities_Source',
'er_scripts/all_entities_SSCell',
'er_scripts/all_entities_SSRow',
'er_scripts/all_entities_StudyExperiment',
'er_scripts/all_entities_Subsystem',
'er_scripts/all_entities_SubsystemClass',
'er_scripts/all_entities_TaxonomicGrouping',
'er_scripts/all_entities_Trait',
'er_scripts/all_entities_Variant',
'er_scripts/all_entities_Variation',
'er_scripts/get_entity_AlignmentTree',
'er_scripts/get_entity_AlleleFrequency',
'er_scripts/get_entity_Annotation',
'er_scripts/get_entity_Assay',
'er_scripts/get_entity_AtomicRegulon',
'er_scripts/get_entity_Attribute',
'er_scripts/get_entity_Biomass',
'er_scripts/get_entity_BiomassCompound',
'er_scripts/get_entity_Compartment',
'er_scripts/get_entity_Complex',
'er_scripts/get_entity_Compound',
'er_scripts/get_entity_Contig',
'er_scripts/get_entity_ContigChunk',
'er_scripts/get_entity_ContigSequence',
'er_scripts/get_entity_CoregulatedSet',
'er_scripts/get_entity_Diagram',
'er_scripts/get_entity_EcNumber',
'er_scripts/get_entity_Experiment',
'er_scripts/get_entity_Family',
'er_scripts/get_entity_Feature',
'er_scripts/get_entity_Genome',
'er_scripts/get_entity_Identifier',
'er_scripts/get_entity_Locality',
'er_scripts/get_entity_Media',
'er_scripts/get_entity_Model',
'er_scripts/get_entity_ModelCompartment',
'er_scripts/get_entity_ObservationalUnit',
'er_scripts/get_entity_OTU',
'er_scripts/get_entity_Pairing',
'er_scripts/get_entity_PairSet',
'er_scripts/get_entity_ProbeSet',
'er_scripts/get_entity_ProteinSequence',
'er_scripts/get_entity_Publication',
'er_scripts/get_entity_Reaction',
'er_scripts/get_entity_ReactionRule',
'er_scripts/get_entity_Reagent',
'er_scripts/get_entity_Requirement',
'er_scripts/get_entity_Role',
'er_scripts/get_entity_Scenario',
'er_scripts/get_entity_Source',
'er_scripts/get_entity_SSCell',
'er_scripts/get_entity_SSRow',
'er_scripts/get_entity_StudyExperiment',
'er_scripts/get_entity_Subsystem',
'er_scripts/get_entity_SubsystemClass',
'er_scripts/get_entity_TaxonomicGrouping',
'er_scripts/get_entity_Trait',
'er_scripts/get_entity_Variant',
'er_scripts/get_entity_Variation',
'er_scripts/get_relationship_AffectsLevelOf',
'er_scripts/get_relationship_Aligns',
'er_scripts/get_relationship_Annotates',
'er_scripts/get_relationship_Asserts',
'er_scripts/get_relationship_AssertsFunctionFor',
'er_scripts/get_relationship_Comprises',
'er_scripts/get_relationship_Concerns',
'er_scripts/get_relationship_Contains',
'er_scripts/get_relationship_Controls',
'er_scripts/get_relationship_DefinedBy',
'er_scripts/get_relationship_Describes',
'er_scripts/get_relationship_Determines',
'er_scripts/get_relationship_DeterminesFunctionOf',
'er_scripts/get_relationship_Displays',
'er_scripts/get_relationship_Encompasses',
'er_scripts/get_relationship_Formulated',
'er_scripts/get_relationship_GeneratedLevelsFor',
'er_scripts/get_relationship_HadResultsProducedBy',
'er_scripts/get_relationship_HasAsExemplar',
'er_scripts/get_relationship_HasAsSequence',
'er_scripts/get_relationship_HasAssertedFunctionFrom',
'er_scripts/get_relationship_HasAssertionFrom',
'er_scripts/get_relationship_HasAsTerminus',
'er_scripts/get_relationship_HasCompoundAliasFrom',
'er_scripts/get_relationship_HasCoregulationWith',
'er_scripts/get_relationship_HasDefaultLocation',
'er_scripts/get_relationship_HasFunctional',
'er_scripts/get_relationship_HasIndicatedSignalFrom',
'er_scripts/get_relationship_HasLevelsFrom',
'er_scripts/get_relationship_HasMember',
'er_scripts/get_relationship_HasParticipant',
'er_scripts/get_relationship_HasPresenceOf',
'er_scripts/get_relationship_HasProposedLocationIn',
'er_scripts/get_relationship_HasProteinMember',
'er_scripts/get_relationship_HasReactionAliasFrom',
'er_scripts/get_relationship_HasRealLocationIn',
'er_scripts/get_relationship_HasRepresentativeOf',
'er_scripts/get_relationship_HasResultsFor',
'er_scripts/get_relationship_HasResultsIn',
'er_scripts/get_relationship_HasRole',
'er_scripts/get_relationship_HasSection',
'er_scripts/get_relationship_HasStep',
'er_scripts/get_relationship_HasTrait',
'er_scripts/get_relationship_HasUnits',
'er_scripts/get_relationship_HasUsage',
'er_scripts/get_relationship_HasValueFor',
'er_scripts/get_relationship_HasValueIn',
'er_scripts/get_relationship_HasVariant',
'er_scripts/get_relationship_HasVariation',
'er_scripts/get_relationship_HasVariationIn',
'er_scripts/get_relationship_Impacts',
'er_scripts/get_relationship_Implements',
'er_scripts/get_relationship_Imported',
'er_scripts/get_relationship_Includes',
'er_scripts/get_relationship_IncludesPart',
'er_scripts/get_relationship_IncludesPartOf',
'er_scripts/get_relationship_IndicatedLevelsFor',
'er_scripts/get_relationship_IndicatesSignalFor',
'er_scripts/get_relationship_Involves',
'er_scripts/get_relationship_IsAffectedIn',
'er_scripts/get_relationship_IsAlignedBy',
'er_scripts/get_relationship_IsAlignedIn',
'er_scripts/get_relationship_IsAlignmentFor',
'er_scripts/get_relationship_IsAnnotatedBy',
'er_scripts/get_relationship_IsARequirementIn',
'er_scripts/get_relationship_IsARequirementOf',
'er_scripts/get_relationship_IsAssayedBy',
'er_scripts/get_relationship_IsAssayOf',
'er_scripts/get_relationship_IsATopicOf',
'er_scripts/get_relationship_IsBindingSiteFor',
'er_scripts/get_relationship_IsBoundBy',
'er_scripts/get_relationship_IsClassFor',
'er_scripts/get_relationship_IsCollectedInto',
'er_scripts/get_relationship_IsCollectionOf',
'er_scripts/get_relationship_IsComponentOf',
'er_scripts/get_relationship_IsComposedOf',
'er_scripts/get_relationship_IsComprisedOf',
'er_scripts/get_relationship_IsConfiguredBy',
'er_scripts/get_relationship_IsConsistentTo',
'er_scripts/get_relationship_IsConsistentWith',
'er_scripts/get_relationship_IsContainedIn',
'er_scripts/get_relationship_IsControlledUsing',
'er_scripts/get_relationship_IsCoregulatedWith',
'er_scripts/get_relationship_IsCoupledTo',
'er_scripts/get_relationship_IsCoupledWith',
'er_scripts/get_relationship_IsDefaultFor',
'er_scripts/get_relationship_IsDefaultLocationOf',
'er_scripts/get_relationship_IsDescribedBy',
'er_scripts/get_relationship_IsDeterminedBy',
'er_scripts/get_relationship_IsDisplayedOn',
'er_scripts/get_relationship_IsDividedInto',
'er_scripts/get_relationship_IsDivisionOf',
'er_scripts/get_relationship_IsEncompassedIn',
'er_scripts/get_relationship_IsExemplarOf',
'er_scripts/get_relationship_IsFamilyFor',
'er_scripts/get_relationship_IsFormedInto',
'er_scripts/get_relationship_IsFormedOf',
'er_scripts/get_relationship_IsFunctionalIn',
'er_scripts/get_relationship_IsGroupFor',
'er_scripts/get_relationship_IsImpactedBy',
'er_scripts/get_relationship_IsImplementedBy',
'er_scripts/get_relationship_IsInClass',
'er_scripts/get_relationship_IsIncludedIn',
'er_scripts/get_relationship_IsInGroup',
'er_scripts/get_relationship_IsInPair',
'er_scripts/get_relationship_IsInstanceOf',
'er_scripts/get_relationship_IsInstantiatedBy',
'er_scripts/get_relationship_IsInTaxa',
'er_scripts/get_relationship_IsInvolvedIn',
'er_scripts/get_relationship_IsLocated',
'er_scripts/get_relationship_IsLocatedIn',
'er_scripts/get_relationship_IsLocatedOn',
'er_scripts/get_relationship_IsLocusFor',
'er_scripts/get_relationship_IsManagedBy',
'er_scripts/get_relationship_IsMemberOf',
'er_scripts/get_relationship_IsModeledBy',
'er_scripts/get_relationship_IsNamedBy',
'er_scripts/get_relationship_IsOwnedBy',
'er_scripts/get_relationship_IsOwnerOf',
'er_scripts/get_relationship_IsPairOf',
'er_scripts/get_relationship_IsParticipationOf',
'er_scripts/get_relationship_IsPartOf',
'er_scripts/get_relationship_IsPresentIn',
'er_scripts/get_relationship_IsProjectedOnto',
'er_scripts/get_relationship_IsProposedLocationOf',
'er_scripts/get_relationship_IsProteinFor',
'er_scripts/get_relationship_IsProteinMemberOf',
'er_scripts/get_relationship_IsRealLocationOf',
'er_scripts/get_relationship_IsReferencedBy',
'er_scripts/get_relationship_IsRegulatedIn',
'er_scripts/get_relationship_IsRegulatedSetOf',
'er_scripts/get_relationship_IsRelevantFor',
'er_scripts/get_relationship_IsRelevantTo',
'er_scripts/get_relationship_IsRepresentedBy',
'er_scripts/get_relationship_IsRepresentedIn',
'er_scripts/get_relationship_IsRequiredBy',
'er_scripts/get_relationship_IsRoleFor',
'er_scripts/get_relationship_IsRoleOf',
'er_scripts/get_relationship_IsRowOf',
'er_scripts/get_relationship_IsSectionOf',
'er_scripts/get_relationship_IsSequenceOf',
'er_scripts/get_relationship_IsShownOn',
'er_scripts/get_relationship_IsStepOf',
'er_scripts/get_relationship_IsSubclassOf',
'er_scripts/get_relationship_IsSubInstanceOf',
'er_scripts/get_relationship_IsSummarizedBy',
'er_scripts/get_relationship_IsSuperclassOf',
'er_scripts/get_relationship_IsTargetOf',
'er_scripts/get_relationship_IsTaxonomyOf',
'er_scripts/get_relationship_IsTerminusFor',
'er_scripts/get_relationship_IsTriggeredBy',
'er_scripts/get_relationship_IsUsageOf',
'er_scripts/get_relationship_IsUsedAs',
'er_scripts/get_relationship_IsUsedBy',
'er_scripts/get_relationship_IsUseOf',
'er_scripts/get_relationship_IsUtilizedIn',
'er_scripts/get_relationship_IsVariantOf',
'er_scripts/get_relationship_IsVariedIn',
'er_scripts/get_relationship_Manages',
'er_scripts/get_relationship_Measures',
'er_scripts/get_relationship_Models',
'er_scripts/get_relationship_Names',
'er_scripts/get_relationship_OperatesIn',
'er_scripts/get_relationship_Overlaps',
'er_scripts/get_relationship_ParticipatesAs',
'er_scripts/get_relationship_ParticipatesIn',
'er_scripts/get_relationship_ProducedResultsFor',
'er_scripts/get_relationship_Produces',
'er_scripts/get_relationship_ProjectsOnto',
'er_scripts/get_relationship_Provided',
'er_scripts/get_relationship_ReflectsStateOf',
'er_scripts/get_relationship_Requires',
'er_scripts/get_relationship_ResultsIn',
'er_scripts/get_relationship_RunsByDefaultIn',
'er_scripts/get_relationship_Shows',
'er_scripts/get_relationship_Submitted',
'er_scripts/get_relationship_SummarizedBy',
'er_scripts/get_relationship_Summarizes',
'er_scripts/get_relationship_Targets',
'er_scripts/get_relationship_Triggers',
'er_scripts/get_relationship_Uses',
'er_scripts/get_relationship_UsesAliasForCompound',
'er_scripts/get_relationship_UsesAliasForReaction',
'er_scripts/get_relationship_UsesReference',
'er_scripts/get_relationship_Validates',
'er_scripts/get_relationship_WasDetermiedBy',
'er_scripts/get_relationship_WasFormulatedBy',
'er_scripts/get_relationship_WasGeneratedFrom',
'er_scripts/get_relationship_WasImportedFrom',
'er_scripts/get_relationship_WasProvidedBy',
'er_scripts/get_relationship_WasSubmittedBy',
'er_scripts/query_entity_AlignmentTree',
'er_scripts/query_entity_AlleleFrequency',
'er_scripts/query_entity_Annotation',
'er_scripts/query_entity_Assay',
'er_scripts/query_entity_AtomicRegulon',
'er_scripts/query_entity_Attribute',
'er_scripts/query_entity_Biomass',
'er_scripts/query_entity_BiomassCompound',
'er_scripts/query_entity_Compartment',
'er_scripts/query_entity_Complex',
'er_scripts/query_entity_Compound',
'er_scripts/query_entity_Contig',
'er_scripts/query_entity_ContigChunk',
'er_scripts/query_entity_ContigSequence',
'er_scripts/query_entity_CoregulatedSet',
'er_scripts/query_entity_Diagram',
'er_scripts/query_entity_EcNumber',
'er_scripts/query_entity_Experiment',
'er_scripts/query_entity_Family',
'er_scripts/query_entity_Feature',
'er_scripts/query_entity_Genome',
'er_scripts/query_entity_Identifier',
'er_scripts/query_entity_Locality',
'er_scripts/query_entity_Media',
'er_scripts/query_entity_Model',
'er_scripts/query_entity_ModelCompartment',
'er_scripts/query_entity_ObservationalUnit',
'er_scripts/query_entity_OTU',
'er_scripts/query_entity_Pairing',
'er_scripts/query_entity_PairSet',
'er_scripts/query_entity_ProbeSet',
'er_scripts/query_entity_ProteinSequence',
'er_scripts/query_entity_Publication',
'er_scripts/query_entity_Reaction',
'er_scripts/query_entity_ReactionRule',
'er_scripts/query_entity_Reagent',
'er_scripts/query_entity_Requirement',
'er_scripts/query_entity_Role',
'er_scripts/query_entity_Scenario',
'er_scripts/query_entity_Source',
'er_scripts/query_entity_SSCell',
'er_scripts/query_entity_SSRow',
'er_scripts/query_entity_StudyExperiment',
'er_scripts/query_entity_Subsystem',
'er_scripts/query_entity_SubsystemClass',
'er_scripts/query_entity_TaxonomicGrouping',
'er_scripts/query_entity_Trait',
'er_scripts/query_entity_Variant',
'er_scripts/query_entity_Variation',
'scripts/all_roles_used_in_models',
'scripts/all_roles_used_in_models_and_subsystems',
'scripts/alleles_to_bp_locs',
'scripts/alleles_to_traits',
'scripts/atomic_regulons_to_fids',
'scripts/close_genomes',
'scripts/co_occurrence_evidence',
'scripts/complexes_to_complex_data',
'scripts/complexes_to_roles',
'scripts/contigs_to_lengths',
'scripts/contigs_to_md5s',
'scripts/contigs_to_sequences',
'scripts/corresponds',
'scripts/dump_relationship',
'scripts/equiv_sequence_assertions',
'scripts/ermodel_to_text',
'scripts/fids_to_annotations',
'scripts/fids_to_atomic_regulons',
'scripts/fids_to_co_occurring_fids',
'scripts/fids_to_coexpressed_fids',
'scripts/fids_to_dna_sequences',
'scripts/fids_to_feature_data',
'scripts/fids_to_functions',
'scripts/fids_to_genomes',
'scripts/fids_to_literature',
'scripts/fids_to_locations',
'scripts/fids_to_protein_families',
'scripts/fids_to_protein_sequences',
'scripts/fids_to_proteins',
'scripts/fids_to_regulon_data',
'scripts/fids_to_roles',
'scripts/fids_to_subsystem_data',
'scripts/fids_to_subsystems',
'scripts/genomes_to_contigs',
'scripts/genomes_to_fids',
'scripts/genomes_to_genome_data',
'scripts/genomes_to_md5s',
'scripts/genomes_to_subsystems',
'scripts/genomes_to_taxonomies',
'scripts/get_abundance_profile',
'scripts/locations_to_dna_sequences',
'scripts/locations_to_fids',
'scripts/md5s_to_genomes',
'scripts/otu_members',
'scripts/ous_with_trait',
'scripts/protein_families_to_co_occurring_families',
'scripts/protein_families_to_fids',
'scripts/protein_families_to_functions',
'scripts/protein_families_to_proteins',
'scripts/proteins_to_fids',
'scripts/proteins_to_functions',
'scripts/proteins_to_literature',
'scripts/proteins_to_protein_families',
'scripts/proteins_to_roles',
'scripts/proteins_to_sequences',
'scripts/reaction_strings',
'scripts/reactions_to_complexes',
'scripts/region_to_alleles',
'scripts/region_to_fids',
'scripts/regulons_to_fids',
'scripts/representative',
'scripts/representative_sequences',
'scripts/roles_to_complexes',
'scripts/roles_to_fids',
'scripts/roles_to_protein_families',
'scripts/roles_to_proteins',
'scripts/roles_to_subsystems',
'scripts/subsystems_to_fids',
'scripts/subsystems_to_genomes',
'scripts/subsystems_to_roles',
'scripts/subsystems_to_spreadsheets',
'scripts/text_search',
'scripts/traits_to_alleles',
'scripts/external_ids_to_kbase_ids',
'scripts/kbase_ids_to_external_ids',
],
PMLIBDIRS => ['lib'],
PREREQ_PM => {
'Test::More' => 0,
'JSON::RPC::Client' => 0,
'Exception::Class' => 0,
},
BUILD_REQUIRES => {
'String::Random' => 0,
},
dist => { COMPRESS => 'gzip -9f', SUFFIX => 'gz', },
clean => { FILES => 'Bio-KBase-*' },
);