package Bio::Phylo::Matrices::Datatype::Protein;
use strict;
use base 'Bio::Phylo::Matrices::Datatype';
our ( $LOOKUP, $MISSING, $GAP );
=head1 NAME
Bio::Phylo::Matrices::Datatype::Protein - Validator subclass,
no serviceable parts inside
=head1 DESCRIPTION
The Bio::Phylo::Matrices::Datatype::* classes are used to validate data
contained by L<Bio::Phylo::Matrices::Matrix> and L<Bio::Phylo::Matrices::Datum>
objects.
=cut
# podinherit_insert_token
=head1 SEE ALSO
There is a mailing list at L<https://groups.google.com/forum/#!forum/bio-phylo>
for any user or developer questions and discussions.
=over
=item L<Bio::Phylo::Matrices::Datatype>
This class subclasses L<Bio::Phylo::Matrices::Datatype>.
=item L<Bio::Phylo::Manual>
Also see the manual: L<Bio::Phylo::Manual> and L<http://rutgervos.blogspot.com>.
=back
=head1 CITATION
If you use Bio::Phylo in published research, please cite it:
B<Rutger A Vos>, B<Jason Caravas>, B<Klaas Hartmann>, B<Mark A Jensen>
and B<Chase Miller>, 2011. Bio::Phylo - phyloinformatic analysis using Perl.
I<BMC Bioinformatics> B<12>:63.
L<http://dx.doi.org/10.1186/1471-2105-12-63>
=head1 FORUM
CPAN hosts a discussion forum for Bio::Phylo. If you have trouble
using this module the discussion forum is a good place to start
posting questions (NOT bug reports, see below):
L<http://www.cpanforum.com/dist/Bio-Phylo>
=cut
$LOOKUP = {
'A' => ['A'],
'B' => [ 'D', 'N' ],
'C' => ['C'],
'D' => ['D'],
'E' => ['E'],
'F' => ['F'],
'G' => ['G'],
'H' => ['H'],
'I' => ['I'],
'K' => ['K'],
'L' => ['L'],
'M' => ['M'],
'N' => ['N'],
'P' => ['P'],
'Q' => ['Q'],
'R' => ['R'],
'S' => ['S'],
'T' => ['T'],
'U' => ['U'],
'V' => ['V'],
'W' => ['W'],
'X' => ['X'],
'Y' => ['Y'],
'Z' => [ 'E', 'Q' ],
'*' => ['*'],
};
$MISSING = '?';
$GAP = '-';
1;