NAME
Bio::VertRes::Config::Pipelines::SpadesAssembly - A base class for generating an Assembly pipeline config file using spades
VERSION
version 1.133090
SYNOPSIS
A class for generating the Assembly pipeline config file using the velvet assembler use Bio::VertRes::Config::Pipelines::SpadesAssembly;
my $pipeline = Bio::VertRes::Config::Pipelines::SpadesAssembly->new(database => 'abc'
config_base => '/path/to/config/base',
limits => { project => ['project name']);
$pipeline->to_hash();
AUTHOR
Andrew J. Page <ap13@sanger.ac.uk>
COPYRIGHT AND LICENSE
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007