# not to be used directly
MapperI defines methods for classes capable for mapping locations between coordinate systems.
Title : in Usage : $obj->in('peptide'); Function: Set and read the input coordinate system. Example : Returns : value of input system Args : new value (optional), Bio::LocationI
Title : out Usage : $obj->out('peptide'); Function: Set and read the output coordinate system. Example : Returns : value of output system Args : new value (optional), Bio::LocationI
Title : swap Usage : $obj->swap; Function: Swap the direction of mapping: input <-> output) Example : Returns : 1 Args :
Title : test Usage : $obj->test; Function: test that both components are of same length Example : Returns : ( 1 | undef ) Args :
Title : map Usage : $newpos = $obj->map($loc); Function: Map the location from the input coordinate system to a new value in the output coordinate system. Example : Returns : new value in the output coordiante system Args : Bio::LocationI
Title : return_match Usage : $obj->return_match(1); Function: A flag to turn on the simplified mode of returning only one joined Match object or undef Example : Returns : boolean Args : boolean (optional)
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.