CLIPSeqTools::Role::Option::ReferenceLibrary - Role to enable reading reference libraries with reads from the command line
Role to enable reading reference libraries with reads from the command line
Defines options. -r_driver <Str> driver for database connection for reference library(eg. mysql, SQLite). -r_database <Str> database name or path for reference library (eg. SQLite). -r_table <Str> database table for reference library. -r_host <Str> hostname for database connection for reference library. -r_user <Str> username for database connection for reference library. -r_password <Str> password for database connection for reference library. -r_records_class <Str> type of records stored in database for reference library (Default: GenOO::Data::DB:: DBIC::Species::Schema::SampleResultBase::v3). -r_filter <Filter> filter library. Option can be given multiple times. Syntax: column_name="pattern" e.g. -filter deletion="def" -filter rmsk="undef" to keep reads with deletions and not repeat masked. e.g. -filter query_length=">31" -filter query_length="<=50" to keep reads longer than 31 and shorter or equal to 50. Supports: >, >=, <, <=, =, !=, def, undef. Provides attributes. r_reads_collection reads collection that is read from the specified source.
To install CLIPSeqTools, copy and paste the appropriate command in to your terminal.
cpanm
cpanm CLIPSeqTools
CPAN shell
perl -MCPAN -e shell install CLIPSeqTools
For more information on module installation, please visit the detailed CPAN module installation guide.