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bioperl-db-1.5.2_100

This Release bioperl-db-1.5.2_100  [Download] [Browse 06 Dec 2006 ** UNAUTHORIZED RELEASE **
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License Artistic
Special Files
Build.PL
Changes
INSTALL
LICENSE
MANIFEST
META.yml
Makefile.PL
README

Modules

Bio::BioEntry DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioDB class creating the adaptor factory for a particular database   UNAUTHORIZED  
Bio::DB::BioSQL::AnnotationCollectionAdaptor DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::BaseDriver DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::BasePersistenceAdaptor DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::BioNamespaceAdaptor DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::BiosequenceAdaptor DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::ClusterAdaptor DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::CommentAdaptor DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::DBAdaptor   UNAUTHORIZED  
Bio::DB::BioSQL::DBLinkAdaptor DBLink Adaptor   UNAUTHORIZED  
Bio::DB::BioSQL::LocationAdaptor DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::MultiDB   UNAUTHORIZED  
Bio::DB::BioSQL::OBDA   UNAUTHORIZED  
Bio::DB::BioSQL::OntologyAdaptor DB Adaptor for Ontology objects   UNAUTHORIZED  
Bio::DB::BioSQL::Oracle::AnnotationCollectionAdaptorDriver DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::Oracle::BasePersistenceAdaptorDriver DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::Oracle::BiosequenceAdaptorDriver DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::Oracle::PathAdaptorDriver DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::Oracle::SpeciesAdaptorDriver DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::Oracle::TermAdaptorDriver DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::PathAdaptor DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::Pg::AnnotationCollectionAdaptorDriver DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::Pg::BasePersistenceAdaptorDriver DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::Pg::BiosequenceAdaptorDriver DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::Pg::PathAdaptorDriver DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::Pg::SpeciesAdaptorDriver DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::Pg::TermAdaptorDriver DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::PrimarySeqAdaptor DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::ReferenceAdaptor DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::RelationshipAdaptor DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::SeqAdaptor DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::SeqFeatureAdaptor DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::SimpleValueAdaptor DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::SpeciesAdaptor DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::TermAdaptor DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::mysql::AnnotationCollectionAdaptorDriver DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::mysql::BasePersistenceAdaptorDriver DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::mysql::BiosequenceAdaptorDriver DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::mysql::PathAdaptorDriver DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::mysql::SpeciesAdaptorDriver DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::BioSQL::mysql::TermAdaptorDriver DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::CacheServer::SeqDB Caching DB object   UNAUTHORIZED  
Bio::DB::DBAdaptorI DESCRIPTION of Interface   UNAUTHORIZED  
Bio::DB::DBContextI Interface for a class implementing a database context   UNAUTHORIZED  
Bio::DB::DBD DESCRIPTION of Interface   UNAUTHORIZED  
Bio::DB::DBI DESCRIPTION of Interface   UNAUTHORIZED  
Bio::DB::DBI::Oracle DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::DBI::Pg DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::DBI::Transaction DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::DBI::TransactionListener a simple transaction listener   UNAUTHORIZED  
Bio::DB::DBI::base base class for drivers implementing Bio::DB::DBI   UNAUTHORIZED  
Bio::DB::DBI::mysql DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::EasyArgv   UNAUTHORIZED  
Bio::DB::PersistenceAdaptorI DESCRIPTION of Interface   UNAUTHORIZED  
Bio::DB::Persistent::BioNamespace DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::Persistent::PersistentObject makes a given object persistent   UNAUTHORIZED  
Bio::DB::Persistent::PersistentObjectFactory DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::Persistent::PrimarySeq Proxy object for database PrimarySeq representations   UNAUTHORIZED  
Bio::DB::Persistent::Seq   UNAUTHORIZED  
Bio::DB::Persistent::SeqFeature Proxy object for database SeqFeatureI representations   UNAUTHORIZED  
Bio::DB::PersistentObjectI DESCRIPTION of Interface   UNAUTHORIZED  
Bio::DB::Query::AbstractQuery Abstract Query class   UNAUTHORIZED  
Bio::DB::Query::BioQuery Object representing a query on a bioperldb   UNAUTHORIZED  
Bio::DB::Query::DBQueryResult DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::Query::PrebuiltResult DESCRIPTION of Object   UNAUTHORIZED  
Bio::DB::Query::QueryConstraint a constraint on a variable value in a query   UNAUTHORIZED  
Bio::DB::Query::QueryResultI DESCRIPTION of Interface   UNAUTHORIZED  
Bio::DB::Query::SqlGenerator Object representing an SQL Query   UNAUTHORIZED  
Bio::DB::Query::SqlQuery Object representing an SQL Query   UNAUTHORIZED  
Bio::DB::SimpleDBContext a base implementation of Bio::DB::DBContextI   UNAUTHORIZED  
ModuleBuildBioperl     1.0050021

Documentation

Bio::DB::BioSQL::DBAdapter Object representing an instance of a bioperl database  
Bio::DB::Persistent::ObjectRelMapperI DESCRIPTION of Interface  
add-term-annot.pl  
drop_mysql_biosql_test_dbs  
load_ontology.pl  
load_seqdatabase.pl  

Other Files

docs/HOWTO-MySQL.html