Adam Kennedy > Graph-XGMML-0.01 > Graph::XGMML

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Module Version: 0.01   Source  

NAME ^

Graph::XGMML - Simple Graph.pm-like interface for generating XGMML graphs

SYNOPSIS ^

  use Graph::XGMML;
  
  my $output = '';
  my $graph  = Graph::XGMML->new(
      directed => 1,
      OUTPUT   => \$output,
  );
  $graph->add_node('foo');
  $graph->add_node('bar');
  $graph->add_edge('foo', 'bar');
  $graph->end;

DESCRIPTION ^

To produce useful diagrams on extremely large graphs, sometimes it is necesary to move beyond simple graphing tools to applications specifically designed for rendering very large graphs, many of which were designed for biology applications (such as my favourite Cytoscape).

Graph::XGMML is a module that can be used to generate export files for arbitrarily large graphs in eXtensible Graph Modelling Markup Language, so that the graphs can be imported into these specialised tools.

The API is intentionally designed to appear similar to more popular modules such as Graph, Graph::Easy and GraphViz.

METHODS ^

new

  # Quick constructor to write to a file
  $graph  = Graph::XGMML->new(
      directed => 1,
      OUTPUT   => IO::File->new('file', 'w'),
  );
  
  # Anonymous constructor
  $graph = Graph::XGMML->new(
      directed => 1,
  );

The new constructor is used to create a graph writer.

It takes a single optional boolean directed parameter, which indicates if the graphs you will be generating will be directed or undirected.

If any additional parameters are passed to new, the constructor will make an additional call to the start method to start writing the document header and to open the root graph node, passing it the extra parameters.

Returns a new Graph::XGMML object, or throws an exception (dies) on error.

start

The start method allows you to explicitly start the document writing, if the original constructor was produced without additional parameters.

Any parameters are passed directly to the underlying XML::Writer constructor which produces the object that will be used to generate the XML.

Returns true if the document is started successfully, or throws an exception (dies) on error.

add_node

  # Add a simple node
  $graph->add_node( 'name' );
  
  # Add optional tag attributes
  $graph->add_node( 'name',
      label  => 'Tag Label',
      weight => 100,
  );

The add_node method is used to add a new node to the graph.

Because the Graph::XGMML object doesn't remember its state as it produces the graph, you must specify all nodes in the graph explicitly.

The first parameter is the identifier for the node. Any additional parameters will be treated XGMML node element tag pairs.

Returns true or throws an exception (dies) on error.

add_vertex

The add_vertex method is an alias to add_node, provided for increased compatibility with the Graph API.

It takes the same parameters as add_node.

add_edge

  # Add a simple edge
  $graph->add_edge( 'foo' => 'bar' );
  
  # Add with optional attributes
  $graph->add_edge( 'foo' => 'bar',
      weight => 1,
  );

The c<add_edge> method adds an edge to the graph.

The first two parameters are the source and target of the edge. Any additional parameters should be a set of key/value pairs of edge attributes.

Returns true or throws an exception (dies) on error.

end

  # Explicitly terminate the document
  $graph->end;

The end method is used to indicate that the graph is completed that the XML should be terminated.

If you do not call it yourself, it will be called for you at DESTROY-time.

SUPPORT ^

Bugs should always be submitted via the CPAN bug tracker

http://rt.cpan.org/NoAuth/ReportBug.html?Queue=Graph-XGMML

For other issues, contact the maintainer.

AUTHOR ^

Adam Kennedy <adamk@cpan.org>

SEE ALSO ^

Graph, Graph::Easy, GraphViz

COPYRIGHT ^

Copyright 2009 Adam Kennedy.

This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

The full text of the license can be found in the LICENSE file included with this module.

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